Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_30607	LG8	38975595	38977510	PREDICTED: trihelix transcription factor ASR3-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	38975615	synonymous_variant	p.Thr7Thr
A/C	38975650	missense_variant	p.His19Pro
G/C	38975653	missense_variant	p.Arg20Pro
A/C	38975656	missense_variant	p.Gln21Pro
G/C	38975682	missense_variant	p.Val30Leu
C/T	38975780	synonymous_variant	p.Leu62Leu
G/A	38975800	missense_variant	p.Arg69Lys
C/G	38976005	synonymous_variant	p.Arg137Arg
G/*,A	38976032	synonymous_variant	p.Gln146Gln
T/C	38976437	downstream_gene_variant
T/A	38976441	downstream_gene_variant
C/T	38976639	intron_variant
G/T	38976643	intron_variant
T/A	38976709	intron_variant
T/C	38976743	intron_variant
T/G	38976824	intron_variant
A/C	38976908	intron_variant
A/T	38976909	intron_variant
A/T	38977033	intron_variant
A/G	38977069	intron_variant
A/T	38977084	intron_variant
T/C	38977095	intron_variant
C/T	38977100	intron_variant
G/A	38977147	intron_variant
T/A	38977148	intron_variant
G/A	38977272	synonymous_variant	p.Lys266Lys
G/T	38977397	missense_variant	p.Gly308Val
C/T	38977434	synonymous_variant	p.His320His

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_30607.1

MSDPSTTPLPHPPLLPDPHRQPLHHHHHPVPLIQAAAAAAPPSSSSLAREYRKGNWTIQETLILITAKRLDDERRLKTPHDPTRPACSSTASSSARTSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDYKKVRDYESKSQQQQHQHSHEIKHFPSYWTLNKQQRKEQNLPSNMVYEIYHAITEVLQRKQTQPQSQTQRQPQPQPQPPLALITDSSPPPLPPPPPPPVSSTPPAVSERSESSGTEHSEDDADDGSESKRRKVKSLGSSIMRSASVLARALRSCEEKKEKRHRELIELEQRRLQMEEARNEVHRQGIATLVAAVTNLSGAIQSLINSERNGQR*

CDS Sequence:
>Vu_30607.1

Promoter Sequence:
>Vu_30607::LG8:38973595-38975595(+)

GCGAAAGTAAGAGTCAAGATGGATGAATTGTGGTTCAAACTATAGCCGCCACACGATTGAACCAAATGTATGAAAGAATAAGAAGGGTTGTTGCAGTAGTAATGTGGTAAGCGAGAGAAGGAAATACAAGCTCATGTAACTAAAACAAAGACAACTTAAAAGTAAAGTGTTTTCGTATGGGTTCTTGGCATTTCTTTTTAAATAATCTCATCTAATTAATGGGTCACACAAATCCCCTATTTTCTTCCCTCACACAGGGACAACTAGATGCAAACAAAGGCTAAAGGTTACTTTCGATTTGAATCATCCAAAGTGCTCTCATCATATACATTGTGATCCACAAACTAAGTTTGGGAAGAGACCAAGAAAGCGTTTAAGTTAGGCAAACATGGCTGCATGAAAGAAGGAATTAATGCACAAATATTGTACAGAATGCAATAGTTTATATATGGATTAAATGTTGCGTATGTGATTGAATTCCTAGTACAATGGTGGATTGTATTGTACATGCTAGTAAGGTGGGACGGGATTGTACAACATTGAATATGAATATTCAAGCTTGCGCATCCCCCAATGAGAAGAAATTTTGGGAACTTCATAGGAAATGGTTCTAATGGCCTTGAGTGTCTCACAATTATATATAGAGATAACAAATATAGTATATCTTGTTGGCAAAATGTCATGCCAAAGGAGCTAATGCAAAAGCTTGATGCTTTTGTGACCATTGAAGCTTCCAAATCAATGGGAACTTGGATTATAGTCATTTACTAAAGATTGTTGGGACAACAGTTATATCTCATAACTATTGGGATACTATTGTGTAAGACCTACCACCATCTCAGACACTAGAAGAAGATTTGTATTTGAGCAAAATATTTGAGTATGTTGTCCAATGTGTCATTGTTTATCATCACCATTTGTTATTACAAATCATGTTAATTGTAAATGTTATATATATATATATATACCTTCTTAGATAGCCATGGGAGAGAGAACACCAACGTTTGAAAATACTCGAGCTTTGAAAAGGAGGATTTTGAAGATTGCATTGTCTCTTCCATTTATACTTTTTTCAATATTTTACCAATTTTATTATGATTAAAATAACAAAATGTATTTAATATTAAGAATGGATGGTTATTCAATTCTCAATCGAGACCATGCCAATTTTATAATTAAAGAAACTATTTTCTCTACTTTTAAATATGAGCTGAAATTTATTTTAAAAATATATATAAGTAAAAGCAAACTATTATATATATTTTTTTTCAAATATAAATAAATTTGAACTTATTTTTTTTATTTAGTATCACAGTTTTCGTACTAACTTCCATCTGATTTTTATTTTTACTGGTTTAATTTTTAGTATCGAGTTGAAAGATTCGTAATTTTTACATATGATTACTAACTTTCTTAATTATTGTAGTTTTTTTCCTCATGTTCTCCAAATATGGTATATAATAATAACAATAAAAGGAAGGGATATGGTGATTAAAATAGTGTAATTAATTACATAAGTATAAGAAAAAGACACTCTTCGTAACATTTAATTAGATAAGCATGATTTGTTTTGTTAATAAAGGTAGTTGATTGTTGTATTAATTAGATGGGAGAAGGAGGTAAATTTGGGTGGGTACATGGTTTTAGCATGATGATTTCCATTTGGTGGCTGAGGAACTCAAGACTGGGAATGGAAAGAGATGAACTTTACTCCTTACAAAAGAGTACTCATCCAATTCCACAGTCTAGCCACGTGCAGCTAAACTGCGTTCCACCCCACTCCGCACGTGGCAGCATTCCATAACCGATGCTCTAAATCATTCACCTACTCCGCTCTCCACACAATCCTCAACACACAAATCTCACTCTCAAATCAAACACAACACCCTAACCATCAAATTAAAACATACACATTGTACACCACAAACTCTCAACTTCATTCATTTTTCACTTCTTCACTCCACCACTCTCCACTTCAATTTCATGCCAAATCAAAACCA

Gene Sequence:

>Vu_30607(+)

ATGTCTGACCCTTCCACCACCCCATTGCCACATCCACCACTCTTGCCTGACCCCCACCGCCAACCCCTCCACCACCACCACCACCCCGTCCCACTCATCCAGGCCGCCGCTGCCGCTGCACCACCCTCCTCCTCCTCCCTCGCTCGAGAATACCGCAAGGGCAACTGGACCATCCAAGAGACTCTCATCCTCATAACTGCCAAGAGGCTAGACGACGAACGTAGGCTCAAAACCCCACACGACCCCACCAGGCCTGCATGTAGCTCCACCGCCTCCTCCTCCGCCAGAACAAGCGGTGAGCTACGCTGGAAATGGGTCGAAAACTATTGCTGGAGCCATGGGTGCTTGAGAAGCCAGAACCAATGCAATGACAAATGGGACAACCTCCTCCGCGATTACAAAAAGGTCCGCGACTACGAGTCCAAATCACAACAACAGCAGCATCAACACTCTCACGAAATCAAACACTTCCCTTCTTATTGGACTCTAAACAAACAACAACGTAAGGAACAAAACCTCCCCTCCAACATGGTCTACGAAATCTACCACGCCATCACCGAAGTCCTTCAAAGGAAACAAACACAACCACAATCACAAACTCAAAGACAACCACAACCACAACCGCAGCCTCCGCTTGCATTAATTACAGACTCATCACCTCCACCTCTTCCACCACCTCCCCCACCACCGGTTAGCTCAACCCCTCCGGCGGTTTCAGGTATGCATTAACACTGGCATTAGCGTTAGCAATGTGCTACACAGCTCACACACACTCTCTTACACTTTTTTTTTTTTAAGTTTTCTTTTTGACAATTTTTGGATGTTGTGTTGTGTGTGGGTTATCGGTCAAACTTGCAGGGTCTGAAAACCCTGCCACACTTAATGGGACCCATTTTCCATCTTTTTTTTATCATATGGTACGATGACCTCCATGCTATTTTAAATACAACTTGGTTTACGACCGTTGGATGAAGCTGTTGAATTCATCCAACGGCGCATGAGGAGGGTGTGGCAGTGCGGTGCTATTGGTGGCATCTTACACCACGTTGCTCCACTGCACAAAGATTCTGCTCCCCATTAAAAAATTCGGGGAAAATGTTCTGGCTTCTATTTTTTTTTTTTTCATTTCTATTAATTAAAAATAACACTGAGAGAAAAATAAAGGGCGCTACAGTACAATCATGCAGACCGGTGTGTGGAAGGGTACCACCTCATGATTGTCATGGATTTTGTGGGCTGTCCAAGAAAATAGATTCTAACTCGCTTAATCCCTCTGGGTGTAATCATTAACACAATCCTTAATCCTTAATATTAACAAAATCTCAAATCTTACTCTAAATTAAACAAATAAATAAATCTTTTCCAAGTACCCAATGCATTCTCTCATCTCATAACGCAACTCATGCAAATTAAATACTCATTAAATACCTTCACATTCAATTGGGGACTTAGTCTTTGTCACATGATATTATATATCCATCCTTCCATAAAATATAATAATACCACATCATATATATAGCTCTAACAATTAATGAACCTTAATGATAGTGATGTGACGGATATTGTGATTGTGCTGTGAAACATGTTTGATTGTAGAGAGGTCGGAATCATCAGGCACGGAACACAGTGAAGATGACGCCGATGATGGGTCGGAATCAAAACGTAGAAAAGTTAAAAGTCTTGGTTCAAGCATAATGCGGAGTGCGTCCGTGCTAGCACGAGCTCTCAGGAGTTGTGAAGAAAAGAAGGAGAAGCGGCACCGTGAACTGATAGAGCTAGAGCAAAGACGTCTTCAGATGGAGGAAGCTCGCAATGAAGTTCACCGGCAAGGCATCGCCACCCTTGTTGCAGCCGTCACCAACCTTTCCGGTGCTATTCAGTCACTCATTAATTCTGAACGCAACGGCCAAAGATAA