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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30579 LG8 38628175 38630596 PREDICTED: serine/threonine-protein kinase D6PKL2-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09191 Unclassified: metabolism   C 99980 Enzymes with EC numbers
SNP Position Effect Amino acid change
G/T 38628261 synonymous_variant p.Pro29Pro
G/A 38628267 synonymous_variant p.Ser31Ser
C/T 38628557 missense_variant p.Thr128Ile
T/C 38628558 synonymous_variant p.Thr128Thr
T/C 38628663 downstream_gene_variant
G/A 38628755 downstream_gene_variant
T/C 38628756 downstream_gene_variant
T/A 38628757 downstream_gene_variant
G/A 38628793 downstream_gene_variant
A/G 38628875 downstream_gene_variant
A/T 38629031 downstream_gene_variant
A/T 38629046 downstream_gene_variant
T/C 38629057 downstream_gene_variant
G/A 38629205 downstream_gene_variant
A/T 38629303 downstream_gene_variant
G/A 38629367 downstream_gene_variant
T/G 38629466 downstream_gene_variant
T/G 38629523 downstream_gene_variant
A/T 38629664 downstream_gene_variant
C/G 38629778 downstream_gene_variant
T/C 38629780 downstream_gene_variant
C/G 38629825 missense_variant p.Pro163Arg
G/T 38629849 missense_variant p.Gly171Val
A/C 38629955 missense_variant p.Gln206His
G/A 38629957 missense_variant p.Arg207Gln
G/A 38630025 missense_variant p.Ala230Thr
C/A 38630030 synonymous_variant p.Pro231Pro
A/G 38630136 missense_variant p.Arg267Gly
G/A 38630141 synonymous_variant p.Ser268Ser
A/G 38630426 stop_lost p.Ter363Trpext*?
T/A 38630471 synonymous_variant p.Pro378Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30579.1
MHSSAEDDSDNPATTAGAEWTFSARNHAPSSDPCWEAIERGGGTLGLGDLRFVQRVGSGDIGSVYLVELKGSNGCLFAAKVMDKKELVARNKDTRAKVEREILQAVDHPFLPTLYASLDSPRWSCLLTEFCPGGDLHVLRQRQPDKRFHHAAVRFYASEVVVALEYLHMMGIIYRDLKPENVLIRSDGHVMLTDFDLSLKGDDTTSTAQIVFDQDPPCNTCSNDHSKNQCAPAMSSCMLPNCIVPSVPCFHPKRGRSKRSSRCGSVEIVAEPIEIRSTSFVGTHEYLAPEVISGEGHGNAVDWWTLGVFIFELFYGMTPFKGVEHELTLANIVARALEFPKEPMIPGAARDLISQLLVKDSTMRLGSTMGALAIKHHPFFNGVNWALLRCATPPYIPASDKCKELVRLYNCTTNTVDFY*


CDS Sequence:
>Vu_30579.1
ATGCACTCCTCCGCCGAGGACGACTCCGACAACCCTGCCACCACCGCGGGCGCGGAGTGGACGTTCTCCGCCAGGAACCACGCACCGTCGTCGGACCCCTGCTGGGAAGCCATAGAGCGCGGCGGCGGGACCCTGGGATTGGGTGACCTCCGGTTTGTGCAGCGAGTGGGGAGCGGCGATATCGGAAGCGTGTACTTGGTGGAGCTGAAGGGCTCGAACGGGTGCCTGTTCGCGGCAAAGGTGATGGACAAGAAGGAACTCGTGGCCAGGAACAAAGACACGAGGGCAAAGGTTGAGAGAGAGATTCTGCAAGCGGTGGATCACCCTTTTTTGCCAACTCTTTACGCGTCGCTCGATTCCCCGCGCTGGTCTTGCCTCCTGACTGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGCGGCAGCCCGATAAACGCTTCCACCACGCCGCCGTCAGGTTCTACGCATCTGAGGTTGTGGTTGCCTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAATGTGCTCATAAGATCGGACGGTCACGTAATGCTCACTGACTTTGACCTCTCACTGAAAGGCGACGACACAACATCAACGGCTCAGATCGTGTTCGATCAAGATCCACCCTGCAACACCTGTTCCAACGACCATTCCAAGAACCAATGCGCCCCCGCCATGTCATCCTGCATGCTGCCAAATTGCATTGTGCCATCTGTCCCATGCTTCCACCCGAAACGCGGTCGTAGCAAGAGGTCATCGCGGTGTGGGTCGGTGGAGATCGTGGCGGAGCCAATAGAAATTCGGTCGACGTCGTTCGTTGGGACCCATGAGTACTTGGCGCCGGAAGTGATTTCCGGGGAGGGTCACGGTAACGCCGTTGATTGGTGGACACTGGGAGTATTCATTTTTGAACTGTTCTACGGGATGACACCCTTCAAAGGGGTTGAGCATGAGCTAACCCTAGCGAACATAGTGGCACGTGCCCTTGAGTTCCCTAAGGAGCCAATGATCCCAGGAGCAGCTAGGGATTTGATATCACAACTGTTGGTGAAGGACTCAACAATGAGACTGGGTTCAACAATGGGTGCCCTAGCAATCAAGCACCACCCCTTCTTCAATGGAGTTAATTGGGCATTGTTAAGGTGTGCTACCCCTCCATACATCCCTGCATCAGACAAGTGCAAGGAATTGGTTCGACTCTATAATTGCACAACCAATACCGTAGACTTCTATTAG


Promoter Sequence:
>Vu_30579::LG8:38626175-38628175(+)
GGTTGTTGAACTCAGCCTGTTCCATGAGGCCTAAAGCTGTGCAAACCAGTCCAAGAATTAACCAAGAAAGTCAGCAGGCAGAGCGGAAGCAGAGCAGGCACTAGACCTGCTCTGATACCATATTAAGCCGAAGCCCAAATGGTGTGCAGAGAGAAGAAGCCCAATGTTAGGCGGCCCACAACACAATTAAGACCGTGAGATTGAGACATCTCCGCAGACGTGTCAAAACACTATCTATGCAAATGAAGAGAGAGAACGGAGCATTCCAGAGGCTTCTTCCAGAGGGCGAAGGAGATCAGTGGTGACGCGATGATCCGGCGACCTTGGGAGCTTCAAATGGTGGTGGCGTAGAAGAGAAAAGTGAAGAGATCGAAGAAACAAGTAAGTAAAATGAAAGCTTTTCAAAGCAATTAAGATGCGGGAGAAAAATTTATTGGAAAGGGAGGGACAAATGTAATACTTTCTTCCAAATAGAAATATTATATGTTAATAAAAGTTTTCATCCTCTTCTACAGTGTGTTCTTTTCTCCAATCATAATGAGAAATTCTCTTTCAAACGTTTTCTCAAACGCTAATAATTATAAAAACATTACATATTACATTTTTGTTTTCAAACATTTGTTTGTAAAAACACTTTAACGATATTAATAATTTATTTTATTTTAAGTTATACAAGTTAATTATCGGAGATAAAAAAAATCCATGTATGTAAGGGATTTTACTTATAGAAATGTATGTAAAGCATTTTTGTAAAAAGTTAATTTTTGTCATTTAAAAAAAAAACAACGTGACATGTTTAATGGCTCACTAAAGTATTTAGTGATATAGCCCTCCATTGTAATTATATGGAGATATAGGCATATTAAAAACAATCAACCATAAGAACCTATTCAATAACATATGGAAAGTATAAAAGTTAAAAAGTAATTTAACGGGAAAAAAAAAATCTTTGCATTTCATTCAAGTTAAAGCACAAAAAATTGAAAGATAAAGGGACCCAAATTAATCCACAATTTCAGTGTTTCATTTAATCTTCTTTACCTCTCCTTTTAGTTTTGGAAAGAACTTATTAAATCAACTACAATTTCAAAAAACTATTTAAAAATAAAATTAGAAATGAAAGGTTTGAAAGAAACCTATTCTTTTATTTGTCCCTTAATAATTTTGATCTCCAATTTGCATAGTGTTATTGTTTTTTTTTTTTTTTGCTTCGACAGATTTGTTAAATATTTAATTTTTTTTGGGTGGGTGTCACGGTCCCCTGTCTGTCGCAATAGAGATTCGCGTGTGTTTTGAATAAGATTTATCTGTTTTAATGGCTATTTTTTTAAGAATAATTAAAGCTCTCACTTTATTTGATAATCTTCTGAATAAAAGAAGATCGGGCATGTAATCGTTGTTGTTTAAAGTAAAGAACCACTATTATCTATTAATGATGTCGTAGGGTCGTGGTTCGATTTTCTTTAAACACATTGTTAAGTTAAACTGTCAGTGGACATTACAAAATATGAAAAATAACTCTTTAATTAGATGGGAGTTAAGGGTAATAATTACAGTTGAATAAAACTAGTTACAGTTTAGATTCGTAAAATTTAACTCTTTCGATGCGTTTTCATTGACACTTGACAAAATCAACATGTTCTCCCGTTCGCAATTGGTAGTGTCTCCCCCACGTTACTACTTTTGTTCATACGTGAATGAGAATTGATGATCAATACTATAAAAAGACAAAAAAACAAAAAAAAAATAGAGAAAAAATTGAAGCAGATGGGCCCTTTGACCCAGTGGCCTATTTAGTGTAAAGGCACCAGATGGCCCAATAATAAACTGCCGGCCCATTATGCCCCCACCTCCTTCTCTCATTCCCTTCACAAAACTCAACTCTCTATTTCCCCCCACACGCACACCTCTTTCTCTCTCTCTCTCTCTCACGCACAACACAGCAAACTCCAACTCCATTATTATTACTGCAGTTATTGTTAGAATCATTAGCGACACAA


Gene Sequence:
>Vu_30579(+)
ATGCACTCCTCCGCCGAGGACGACTCCGACAACCCTGCCACCACCGCGGGCGCGGAGTGGACGTTCTCCGCCAGGAACCACGCACCGTCGTCGGACCCCTGCTGGGAAGCCATAGAGCGCGGCGGCGGGACCCTGGGATTGGGTGACCTCCGGTTTGTGCAGCGAGTGGGGAGCGGCGATATCGGAAGCGTGTACTTGGTGGAGCTGAAGGGCTCGAACGGGTGCCTGTTCGCGGCAAAGGTGATGGACAAGAAGGAACTCGTGGCCAGGAACAAAGACACGAGGGCAAAGGTTGAGAGAGAGATTCTGCAAGCGGTGGATCACCCTTTTTTGCCAACTCTTTACGCGTCGCTCGATTCCCCGCGCTGGTCTTGCCTCCTGACTGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGCGGCAGCCCGATAAACGCTTCCACCACGCCGCCGTCAGGTCCGTCTGTCTCTCCTTTCTCTTCTTTAACTCTCCCTATTTAATCTGCATGTGATCCTGTTACACTTTGAAGCGGCGTGGGAACAAAAATGATCACATGTCGGTCGGAACTGTTAATGGTTACATTACATGAGATGCAGAAATTAGTTGACACCTTGAATATGTTTAGTGTTGAATTATGCGATACTTTTTTTGTGTGTTTTTTATTGAACGCAAGAGATTGCAATTTTAGATGATGAATGAACACATGCATGCAGAGAATAATTTGGTCGAGTAATTTGTTTCTTTCATTTATACGTTGTTATAATATAAATCGGTGCGTAATAAATAGAAAGAAAAGTTAATAGGTAACAGTTACTGTTTGAGATGTCAGTGGGATTTGTAACTGAATTAACAATGGGTAACTGGGTATGTTGATGTTTCATACATCAACGCTAATGTAAGGAAAATGAAAATTTATAATATAGTAGTGGAGAGGGTGGAGAGAGAGAGAGAGCGCGCATGTTTATTTGGCTTCTTTGGATGAGTTGGTGATGCAGTTTGTGATGGGAAAGTTGGGATAGGTCTTTGGGTTTGAGTTGAGTTGGTTTAATCTGCTCATAATTTCATTGGCTGTGGGCCATTAGATTCAATTCATGTCTCCTTTGATGCCTTTGATGGTGAGCCCACGAAGGCTTTTGGTGTGTCCGTCGTGCACCAAATAATAATTTAGTGCCTCCCCCACTTAACCAGTAACCATTATCGGATTGCCAAAGTAATACTGATAATAAACAAATTTTAGAGCATTCCTATATCTCGTCGTTTCTGAGCTTGAACAGATTTAAATACTTTTAGGATGGAACCTCCATCTTAAACTATTGCATAAACAAGTAATTCAGCTTTTGGATTTAGTCAAAAGGTTTTATTTCTCTAAAAATTACAGATAGTGCTCGTACGTCTTCATCAAAATATATTTGAAAAATTATGCAAAAATAGAAGTTGATGACGTTTTGCATGGTCAAATTTTAAAATAATGGGTATGATTATTCAAAAGTGGACCCTGCATGATTTAATTATTGGAGAAATTGATGGTAATAAAATTATGATGCTGATATACCAAAATAATACATGCCGATAATAACAATTCCACCATGTTATGTTGACTTGAGGGTTGTGGTTACAGGTTCTACGCATCTGAGGTTGTGGTTGCCTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAATGTGCTCATAAGATCGGACGGTCACGTAATGCTCACTGACTTTGACCTCTCACTGAAAGGCGACGACACAACATCAACGGCTCAGATCGTGTTCGATCAAGATCCACCCTGCAACACCTGTTCCAACGACCATTCCAAGAACCAATGCGCCCCCGCCATGTCATCCTGCATGCTGCCAAATTGCATTGTGCCATCTGTCCCATGCTTCCACCCGAAACGCGGTCGTAGCAAGAGGTCATCGCGGTGTGGGTCGGTGGAGATCGTGGCGGAGCCAATAGAAATTCGGTCGACGTCGTTCGTTGGGACCCATGAGTACTTGGCGCCGGAAGTGATTTCCGGGGAGGGTCACGGTAACGCCGTTGATTGGTGGACACTGGGAGTATTCATTTTTGAACTGTTCTACGGGATGACACCCTTCAAAGGGGTTGAGCATGAGCTAACCCTAGCGAACATAGTGGCACGTGCCCTTGAGTTCCCTAAGGAGCCAATGATCCCAGGAGCAGCTAGGGATTTGATATCACAACTGTTGGTGAAGGACTCAACAATGAGACTGGGTTCAACAATGGGTGCCCTAGCAATCAAGCACCACCCCTTCTTCAATGGAGTTAATTGGGCATTGTTAAGGTGTGCTACCCCTCCATACATCCCTGCATCAGACAAGTGCAAGGAATTGGTTCGACTCTATAATTGCACAACCAATACCGTAGACTTCTATTAG

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