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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30492 LG8 37694873 37695622 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 37694889 missense_variant p.Leu213Pro
T/A 37694962 downstream_gene_variant
C/G 37695147 missense_variant p.Arg159Thr
A/G 37695539 synonymous_variant p.Asn28Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30492.1
MATEEEISTLKLMRQYLLGDISDPFLTNLIPVKVEDSSSELDLDSNSSEQSNFCRFLEYFDFEADKKPTDLASHHNIQNSIATSPLKNSDLADPILPVKKEVTCCYEARRYRGVRRRPWGKFAAEIRDPKRKGSRVWLGTYDTEIDAAKAYDCAAFRMRGQKAVLNFPLEAGRSHPEPNTSGRKRRRDCTATVTTSTHLWLSEAYGVKLNSTLLKET*


CDS Sequence:
>Vu_30492.1
ATGGCCACAGAAGAAGAAATTTCAACTCTGAAACTGATGCGCCAATATCTCTTGGGAGATATTTCAGACCCGTTTCTCACCAATCTCATCCCTGTAAAAGTTGAAGACTCCTCATCAGAACTTGATTTGGATTCAAACTCTTCAGAACAAAGCAACTTCTGCAGGTTTCTAGAATACTTTGATTTTGAAGCAGACAAAAAACCGACAGATCTCGCTTCTCATCATAATATCCAAAACTCCATTGCTACAAGTCCACTCAAGAATTCTGATTTGGCAGATCCAATTTTGCCAGTGAAAAAGGAAGTAACATGTTGTTATGAGGCCAGGCGTTACAGAGGAGTGAGGAGAAGACCATGGGGGAAGTTTGCTGCAGAAATCCGTGACCCCAAAAGAAAAGGAAGCAGGGTGTGGCTAGGTACGTATGACACTGAAATTGATGCTGCTAAGGCTTATGATTGTGCTGCCTTCAGAATGAGAGGTCAAAAGGCTGTATTGAATTTCCCCTTGGAGGCTGGAAGGTCTCATCCAGAACCCAACACTTCTGGCAGGAAGAGAAGAAGAGACTGCACTGCAACTGTCACAACTTCAACTCATTTATGGCTAAGTGAAGCATATGGGGTGAAGTTGAATTCAACACTTCTCAAAGAAACCTAG


Promoter Sequence:
>Vu_30492::LG8:37695622-37697622(-)
CATGGCAATATTTTAAGTCTCTGAATGGACCTAATAGAAGAAAAAACAGAGTAAAAAAAATAAAGGTAACGAGAAATAAAATAAAAATTAAATGTATTTGATAGAAGAAAATAGAGAAAAATGAATGAAAGATAGGATCTGATCACATTTTAATTATCTTCTACGTTCCTATTTCTGTGATACTAAATGAATTGAATCTTATTGATCAGATTTATGTTTGGATGATGCAGTAACATATGGCAGCTGATATTGCCTTTTATAATAGGGAAGTGGGCGTGTTGAAAATTAGAATTGAATAACTTTTTTTAGACAGGACAGCAGGCACGATTAGGGTGTTAGGGTGGTGGCGTAACCGTAAGAAATTTGTACTTCTAAATACCCTCTTTCCTTTCGGTCACTGTCAAACTTTTACATAAATGTATGTCTAACTTTTATATTTCATTCATGTTTTAACCATTTTTTTTAAATGTATTTGATGGATAAGAACAAATTCTTAATTTATTATTGTTTGTTTATTGTAATTTGAAATAAAAAAAAAGTCATATGAATTGTGTATTAGATAAAAATACCTTTTTAATAATAAGAATTTACAAGGTGATGCTTAAAGTCCTAGTTTTTTTTCACTCATTTTAATACATCTTAAATAAATAAATAAAATTCATGTATAGCATTAAGTGAGGAATAATATTAATTTATATTAAATAATCAGTAGTTTTTATTTTAGTTTTATAATTTAAAATTAAGTTAAAATTAAAAGGTCATTTTTATTTTCAATGATTGATTAAAATAAACTCTAAAACTAGAAAGAAGCAACTAAGAGAGTGAGAAAGATTGGGAAACTCCCATATAGAAAGTAAATATTGAATCATTTTTGCAAAATAAAAAATAAGAATAGTTTACAAAGTTGCTAACATAAAATAGGAACCTAATTTGAATGGAAGTGCTTGATAACTCCAATTATTTTAGAAGAGACAGATAGATGCATCATTCCCTTCAGTAGGCGTACTCATCTTACAAGAGTCCAGTTATGCTAAATAATCAAATTCAGTCACGTGTCTGCACATTTTACTATTCGTAAGAAAAACAATAACATCATTCAGTAATTATCCTTGTGAATGCAAGTGATTTACGAGCGTGCTTGTGTTAATCAAGGTAAGTATACTTTTACACTTTAACATACATCAGATTGATGATATGGTTGAAGAGTGTCAGTCTTGTGTTCAAAAAGTGAAATTCCTGCTTTACTTCTTTTCTTTTAATCAGAAAAAAATGATTTTGGGAAACGCTGTTGACTTTTGTCTATGGTACTGTGGTACAGTTGCAGGACACTTGCACAAAACTAAATTATATCTGTAGATTTAGAGATAATACCTATAAGATATCTTCTGCTATGGTGGTTTTAGCTAAACCACAGCAAGTGTATAAAGTATACGTCGAAGACAATACTTCAACGTTTTGATGTGATTTGTCTAAAATATCAAAATTAATGTCCTTAATCGTCTTGTTACAAGTTGAATCATATATTTAAAACAGCAGCCTTTTTTCTAGCTTGCAATCCAGTGTATACAAATCAGTAAGAAACAAACCAAAAACATGTTGTTGACTCTTTGCATACAAGTTGTAAAGTTTCTTCTTCCTATTGGTTTACTTGATTTATTTGCTCTTTGTACAAACCAGCTGTATTGCTAACTGCCAAAGACCAAGTTGATCATCTAACCAATAATAATTTTGTTGCTTCAATGTGGGGTGTACCCAAATAGAAAGATCATTAATTTGGATAAGATTATGTACTTCCAGAGTGAAAACCGTGTAAGTCTCCACTCGCATTAACTAGATAATCAATTCTGATGTATCCATAGGGACCCTTTTTTCAGTGACAGATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATATATATATATAGTTTCTATCTTTTTATACATCCCAAATAAACGAACCCTGTTCAACAGTTCTTGTTTCTTAAAG


Gene Sequence:
>Vu_30492(-)
ATGGCCACAGAAGAAGAAATTTCAACTCTGAAACTGATGCGCCAATATCTCTTGGGAGATATTTCAGACCCGTTTCTCACCAATCTCATCCCTGTAAAAGTTGAAGACTCCTCATCAGAACTTGATTTGGATTCAAACTCTTCAGAACAAAGCAACTTCTGCAGGTTTCTAGAATACTTTGATTTTGAAGCAGACAAAAAACCGACAGATCTCGCTTCTCATCATAATATCCAAAACTCCATTGCTACAAGTCCACTCAAGAATTCTGATTTGGCAGATCCAATTTTGCCAGTGAAAAAGGAAGTAACATGTTGTTATGAGGCCAGGCGTTACAGAGGAGTGAGGAGAAGACCATGGGGGAAGTTTGCTGCAGAAATCCGTGACCCCAAAAGAAAAGGAAGCAGGGTGTGGCTAGGTACGTATGACACTGAAATTGATGCTGCTAAGGCTTATGATTGTGCTGCCTTCAGAATGAGAGGTCAAAAGGCTGTATTGAATTTCCCCTTGGAGGCTGGAAGGTCTCATCCAGAACCCAACACTTCTGGCAGGAAGAGAAGAAGAGACTGCACTGCAACTGTCACAACTTCAACTCATGTATGTCATGAAAAATAACTCAGTGTAGCATTCAGTACCATGTTTTTTTTGTCAGTTAAATAAGTTAATGCAAAGGTTTCTATCTAAAACCTTCAGTTATGGCTAAGTGAAGCATATGGGGTGAAGTTGAATTCAACACTTCTCAAAGAAACCTAG

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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