Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_30482	LG8	37624844	37625980	PREDICTED: ethylene-responsive transcription factor ERF062	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	carboxylic acid metabolic process, regulation of transcription, DNA-templated, regulation of root development, regulation of developmental process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, oxoacid metabolic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, oxoacid metabolic process, carboxylic acid metabolic process, regulation of root development
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus
Molecular Function	enables	sequence-specific DNA binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
G/A	37624893	missense_variant	p.Arg17His
C/A	37625092	synonymous_variant	p.Ser83Ser
T/A	37625155	synonymous_variant	p.Thr104Thr
C/A	37625160	missense_variant	p.Pro106Gln
C/T	37625163	missense_variant	p.Pro107Leu
G/A	37625198	missense_variant	p.Ala119Thr
T/A	37625201	missense_variant	p.Ser120Thr
C/T	37625326	synonymous_variant	p.Asn161Asn
C/A	37625416	missense_variant	p.Asn191Lys
A/G	37625470	synonymous_variant	p.Gly209Gly
A/T	37625623	synonymous_variant	p.Gly260Gly

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_30482.1

METGSKFLDNAMIGGSRSLTASNHLHVLRSGENSSITSSQQLLSCSNSTSMKEEAPLATWISHIPAKFNGPQDIKNVREKNRSNSIFPASDTKNSSIPLNLLETLPPLTMAPCFDEPVASLASSSAPPNFPNLTLVLQEPSMVYSSSSNMKSGEVMSVTSNPTYQVPHFGQNQHQGCSDAHKTNKNLKSFNENWLSSTRTQPMKYGGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVSSHRKPTDSPAGLSNKHTDENGKLKSTNDKNSTMKEWQFDNTEKSKSIHHDISDVETVQLSRMPSLDMDSIWDELLVSNS*

CDS Sequence:
>Vu_30482.1

ATGGAAACAGGATCAAAGTTTTTGGACAATGCAATGATAGGGGGTTCTCGTTCTCTTACTGCCTCTAACCATCTTCATGTGTTAAGAAGTGGGGAAAACTCATCAATAACATCATCTCAACAACTTCTTTCATGTTCAAATTCTACTTCAATGAAAGAAGAGGCACCTTTAGCCACATGGATTAGTCATATCCCTGCAAAGTTCAATGGCCCTCAAGACATAAAAAATGTGAGAGAGAAAAACCGATCCAATTCTATCTTCCCAGCCTCGGACACAAAAAACAGCTCCATTCCTCTAAATCTTTTGGAAACTCTCCCACCATTGACTATGGCACCATGTTTTGATGAGCCTGTTGCTTCTTTAGCCTCTTCTTCTGCCCCACCCAATTTTCCAAACTTGACTTTGGTTTTGCAGGAACCCTCCATGGTGTACTCATCATCATCAAATATGAAAAGTGGTGAAGTCATGTCTGTAACTTCTAACCCCACCTATCAAGTTCCTCACTTTGGGCAAAACCAGCATCAAGGATGTAGTGATGCACACAAAACGAACAAGAATCTGAAGTCTTTCAACGAGAATTGGTTGAGTAGCACTAGGACTCAGCCTATGAAGTATGGTGGAAGAGGAAAACTGTTTAAAGGTGTGAGGCAGAGACACTGGGGGAAATGGGTTGCTGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTAGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATACTGAGAGGAGAATATGCACAGTTGAACTTCCCAGATCTCAAGCATGTAATCCAGGCCAATTCTCTGAATGGAACCACTGCAGCACTTGTGGAGGCAAAACTACAAGCAATATCTCAAGGTGTTTCTTCTCACAGGAAGCCTACTGACTCACCAGCAGGCTTAAGCAACAAGCACACTGATGAGAATGGCAAATTGAAAAGTACAAATGACAAGAATTCAACCATGAAGGAGTGGCAGTTTGATAATACTGAGAAAAGCAAAAGTATACACCATGATATATCAGATGTGGAAACTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACAGTATTTGGGATGAACTTTTGGTCTCTAATTCATGA

Promoter Sequence:
>Vu_30482::LG8:37622844-37624844(+)

TCTCATAAAATTAATTTGTAAAATTGTTCTAATTATATATTGTAATTTGGTTGGCTTTATATACCCATATAAAATCTTTAACAAAAATGTTTTGTTTTTTTAATTTTTTTTTGTTTTACGTTAAATATATATAGATAGCTAGATATTTATTGTTTTTGTCCATGTAAAATATTATTTTTTTACTTTTAGTCTGTATCTTCAAAAACAAGAATAAAAATTTGACAAGACTAGAATAAAATATCAAACACTATAAAACTTAAAACTTACGGGCATCAAAAAGCATGCAAAAAAACTATATTTTATTCATATAAATATATTTAAACCCTAAATATACAATAGAATTGTATTGCATTTGCAGTCACTTATGTTAAGCTTTTTGAAAATTTGAATGTCTCATCAAGAGACAAGCCACGCATCTTTATCTTTATTTCAATGAACTACACAAACTGCAAGACCATTTTTAATGTTAATCTCTTTTTGATTATCATGGTGAGGTACAAACCAAGGCATAGGAATTAAGAATAATGGTTGATGTGGGAAAAGTTGACAGCTAACTAAAGCAACATCATATGCATCACCTTCTGTCCTGTTTATTATACTAAGCAATTCAGTTTGTGGCACACATCACATTCTTTCCTGGTCACAACCATGTGCATGGCTTATAAAGTAATTGAGAAAACAGTTGTACAATTGGAGGAACCTATTGTAAATGGTTTAAAGTGTTACTAAAAGTTACATGGAGAGTGAAAGATGCCTAGAATCTGTCTCACATAGAAAAAAAAATGGTGTTACTTCCTTAGAGTGGTCATGCCATGTGGCATCAACAAATGGGGTGTCTTCAAATTAGAGCAATGAATCACAAGCTTGTGCAGTTTTAATCATTATAGGTTCAAATATGGAAGTCCTGTTCTAACCATTAGCTTCTGCTACATTTTCATTGGCATTATCTATATGCCTTATGAACCGTTTTCAGTGTCTTTATGCCATTCTCAAAAGAAATCAAAGTGTTTGATGAAAATAAAAAACTCAAAAAGTTCATACTTTGCTGTGCTCACACATTTGAGTGTTTTTGTTTAATGCTATAGACCTGAAAAAGGTAGCACTGACTTCATCAAAATAACACAAAGGATATTGAAATTAAATCCTTCATAAATATAGTATTCGTGTACATGATAACATAGATAATGAACCTTTGTTTGCACCAAAAGGGAAAACAACAAGAACAACAAATGATAAACCTTTGTTAATCAATTGCACCACCAAACCTTCCAAACTTAGTGCCTTTTTAAGGAGGAAAAATAGTGCAGTTTGTCATCTTAGTGGTTAGAAACTAAATTTCATTTTTTCTAAAATATAAAATTATTACTTTTTGTACTCTGGTGTGTATGAAATGTATCAGTAACAAAAAACAAATTGTAATTGGTTCATTGGATTTCTGCATTAAATTACATCAGCACAGTCAAGAGAAGAATATAGCATGTGGGTGTTCAACAAAATCACATGATTAGAGAGGAAAGAATAATACCAGATATAATAACAAACAATGAACATGAAGGTCTTAAATTAAGGAAGCTGTTGTCATCAAACGAATGTCAATTCTCAATACTTTGCACCCTGTATGACAGCTGATCCAAAAAGCTTGAGCTGTCTGATTCCTATTGGTTGTGAAGGAAAAGCATGTCATATAATGCAACCATAAATTGTAAGTAAAAAATGAAATCCCCATAAAGAAATACACCTGATTGAAGCCACAACATATTCCTAATGAAAAAAAGTAGGTTACTTTTATTGTTTATAATAATAAACCTTAACTGATACCTGCCAATGTGAGGTGTGCCTTAGTCCTCAGGAAATGTACTTAGTGGAGTGCATGGATTTTAATCATTTCTATCTGTCAGTGTTCTATCTCAGATTTACTGTCTGAAGGATCTATATGAAGGGTACATTTCCAAAGAAGGAAATCTTCACTCAAAAGAAATTTTCAACTTGTTTGCAGGAAA

Gene Sequence:

>Vu_30482(+)