Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30468 LG8 37497030 37499106 nuclear transcription factor Y
Map

Annotations  
category   relationship type   keyword
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
T/C 37497119 synonymous_variant p.Arg30Arg
T/C 37497233 synonymous_variant p.Ser68Ser
A/C 37497264 intron_variant
G/T 37497265 intron_variant
G/T,* 37497300 intron_variant
G/T 37497342 intron_variant
T/C 37497345 intron_variant
T/G 37497357 intron_variant
G/T 37497385 intron_variant
A/G 37497386 intron_variant
G/T 37497410 intron_variant
A/G 37497411 intron_variant
G/T 37497429 intron_variant
G/A 37497450 splice_region_variant&intron_variant
G/A 37497456 splice_acceptor_variant&intron_variant
G/A 37497486 missense_variant p.Gly83Glu
G/A 37497552 missense_variant p.Ser105Asn
T/A 37497597 intron_variant
A/C 37497605 intron_variant
T/C 37497614 intron_variant
T/A 37497646 intron_variant
A/G 37497654 intron_variant
T/A 37497732 intron_variant
A/G 37497737 intron_variant
A/G 37497754 intron_variant
G/T 37497755 intron_variant
T/A 37497788 intron_variant
A/C 37497789 intron_variant
T/C 37497796 intron_variant
T/A 37497832 intron_variant
T/C 37497857 intron_variant
G/T 37497882 intron_variant
G/C 37497898 intron_variant
T/A 37497989 intron_variant
G/A 37498024 intron_variant
A/T 37498028 intron_variant
G/T 37498040 intron_variant
T/G 37498087 intron_variant
C/G 37498180 missense_variant p.Ala129Gly
C/A 37498185 missense_variant p.Pro131Thr
C/A 37498209 splice_region_variant&intron_variant
T/C,* 37498236 intron_variant
C/T 37498396 intron_variant
G/A 37498458 intron_variant
G/A 37498461 intron_variant
C/T 37498477 intron_variant
G/A 37498568 intron_variant
G/A 37498597 intron_variant
T/G 37498604 intron_variant
C/T 37498810 intron_variant
G/C 37498934 intron_variant
G/C 37498978 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30468.1
MSDVPVSPSHDSGGEQSPRASSSGAREQDRLLPIANISRIMKKGLPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGDTKGSARGGDGSARPDQVGLAGGRTDIYKQSSVPAI*


CDS Sequence:
>Vu_30468.1
ATGTCGGATGTGCCAGTCAGCCCGAGTCACGACAGTGGGGGCGAGCAGAGCCCGCGAGCTTCGTCGTCTGGTGCCAGGGAACAAGACCGTCTCCTTCCTATTGCCAATATCAGCCGCATCATGAAGAAGGGTCTGCCTCCCAACGGCAAGATTGCTAAAGACGCCAAAGATACTATGCAGGAATGTGTTTCTGAGTTTATCAGTTTCATTACCAGCGAGGCTAGTGAGAAATGTCAGAAAGAGAAGAGGAAGACTATTAATGGAGACGATTTGTTATGGGCAATGGCCACTTTAGGTTTTGAAGACTACATAGAGCCCCTTAAGGTGTACCTGGCAAGGTACAGAGAGGGTGACACCAAAGGATCTGCTAGAGGTGGTGATGGATCTGCTAGACCAGATCAAGTTGGCCTTGCAGGAGGGAGGACTGATATTTACAAGCAAAGTTCAGTGCCAGCAATTTGA


Promoter Sequence:
>Vu_30468::LG8:37495030-37497030(+)
CCGAGAGACAAAATATCTCTTAGGAAAGGCTTTGGCAAACAAGCTGCCTTCATCACACACGAATGAGAAAGAGAGAGAGCTTAAGGCTCTTCTGGAAGCTAGAGAGGGAAAAAGTGTGGAGCTCTCTGCAAGCGTTCAACCATGGCTGTTGGGAGGAGAAGAGGAGAAGAAGAGAAGATATGCGCAAAGGCTTCACGAAAGGTAAGAAAGACATAAACTTTTCTTATTCTCTGTAATGGTGTTCTTACATAATTTTTGTTCTACTAAAAAATAAAAGGAGAAACTCTATTTATAGAGTTCATGGGAAAAAGGGGAAAAAATCAGAAAACCCTAACTAACAAAACAAACCGATCACTGTCTTCTGATAGTATTCTAATCGATTATTTTCGGTCTCAATAAAATCTTATAAAAGACTAAGATAACACGTGCAAAAACATTAAAGCTCACATGCAAAGTAAGCAAGACATATAAAAGAAAAATAGTATAAACTAACTTACTCTTTTAAAAAAATTATGGATTAAATCTAAAGATCTTATCAATATAATCACTCATACCATTTTTTTTATCTTTAAACAATTATTTTTATGATCATAACACACACATATATACATACATACATACATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATTTCTATTGATTTCATAACATCTTAAATTTAAAACTTTATAAAAGATATGAAATGAAGAATAACTTTTATTATTTTTATTAAAAAATGTATTATATAATAAAAATCATATTTCTCACCCATATTAATAATGACGAGAACAGTCCATTAATAACTACATGTGATTGCATCATAGGAGAGAAAAAAAAAAAAATATATATATATATATATATAACATTTTCATTTGATTTCATGTATTACTTATTAATATCTTTATAAGTGCTGTATTTTATAATTAATATAAAAAATATAAAATAAAAACTATTTTTATTATTTTTATTAAAAGTGTATTATATAATAAAAGATAATATCTGTCATGTACGTTATTAATAATAATAATAATTACAATTCATTAATAATTATAAGTTATATAATTATAAGTTATTGCATGAAAGTAAAAATAAAACAAAATATAACAATCTTATTATTTAATATGTTTTAAATTAATATCACCTTACTTTAATCACAACATTTTTTTAATAAGAGAACATTACAATGTTTTAATACATAAAAACAAATGACAATGACGTCACACAATTAAAAAATTTTAACTATAAAAATTTTAAATTTTCAACCTATTAAAACTTAACCAAACATATATTATTTGATAAAATTGTAAAAATATAATGTATATAAAAATAAATTACAAACTTATATTTACATATTACTCTAAATTAGATTATAAATAAAAAGACAGTAATGTATAATTAATTCACACACACATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTTTTAAATCAGTTGTACATTGTAAATTAAATTATAAAAGCTGAAGATTGTGCATATAATTTATTGAGGGAACAATGTTGAAAAGTGAAAGGTGTATATTGAACTTAGGTAAAAATAGTGAAATTGAGTATGTCTTTGTTCTGTGTCTTATTGTCTGCATAAATTTGTTTTTGTAACCCAATTCCACCAATCATCGGTCTCCTTCTCGCGCCAAATACAAAAACCACCACCATTTTCCATTCTCCTCCTTCCTCTCTCACTCCCATACCGGTAATAATTTAACTTTGCTCTGTTAAACATCGTCCATCCATGTCACATCTCGGATCTCACCCACCCTTCACTTTCCATCACCAATCAATCCATTCCTTCTCCTTTCCCACACGCACATTCATCCATGTCTATAAACAAACATCCACAAGAGACTTTGCATTTTTTCTTTCTTCCTTTGTCACGCTTTGTTTCTCTGTTAAATCCTTGCGTTTTGTAGGGTTTGTGAGA


Gene Sequence:
>Vu_30468(+)
ATGTCGGATGTGCCAGTCAGCCCGAGTCACGACAGTGGGGGCGAGCAGAGCCCGCGAGCTTCGTCGTCTGGTGCCAGGGAACAAGACCGTCTCCTTCCTATTGCCAATATCAGCCGCATCATGAAGAAGGGTCTGCCTCCCAACGGCAAGATTGCTAAAGACGCCAAAGATACTATGCAGGAATGTGTTTCTGAGTTTATCAGTTTCATTACCAGCGAGTTAGTTCCAAACTATAGATAACAAAAGTTTGAGTTCACGATGTTTATTTTTGATTTTTATTTTTGATTTTTAATTTTTGTTTTTGCAACTGGCGGTTGTTTGAGAGTGTGATTATATATCAAGCATTTGTAGCAAAGAATGATTTGTTTTCAGTTTTTTTTGACAATTGGAGTTTCTGATGATTTTTGGTTACTGAATTCCGTGCAGGGCTAGTGAGAAATGTCAGAAAGAGAAGAGGAAGACTATTAATGGAGACGATTTGTTATGGGCAATGGCCACTTTAGGTTTTGAAGACTACATAGAGCCCCTTAAGGTGTACCTGGCAAGGTACAGAGAGGTATTTTTTTTTCTTTTTTATTCTTTCTTGATAAAGTTTCTCAGGATTCTTACATATTGGTTTGCAGCATCTGCTCTTTCTATAGTAATAAATTATTTGTTCATATATATATATAAAAGTTCTGTCATTGTTGTTTTATTTTTTAGTGGATACACAAATAGGACACTGAGATATATATATACATACCCACACCCACACACACTATTAAAATTTAAGGAGAATTATTCATCCCAGTTTTCATTTCCCTTCCCATCTTGAACTGTGGATTGGTTTTTGGCTGGTTGAGCCAGGTACACGAGGAACCTTTTCAAGGAAAAAATTCATAAAGTTCTCTTCCATCCCCTTCATTTAAACGAGGATGCTTGTATAATGTTGCTTATACTATAATTAACTGACTTTTTCCTTTTCCTTTTTATTTGGTTGGTGACTTTGGGATGTGCACAATATCACAGACGGAGGTTAGTCAGTCCTCCTCTTGGGTTGTGTTATTTGTAATTTATCTTGGACTATTTTTGTCAATGGAAATGTTAATGTTTGGACACAAATTCTTATAGGGTGACACCAAAGGATCTGCTAGAGGTGGTGATGGATCTGCTAGACCAGATCAAGTTGGCCTTGCAGGTCAAAATTCTCAGGTGTGGATGAATAGCTTTTTTAATTTTGTTTTTAGTTCAACAATTATTAGTCTTATGATATTATCTCTAAGGAAAAATGATTTGGTTCATTGCGTGTTTTTGGTTAAATGTATATGGCAGCTTGTTCATCAGGGTTCACTGAACTATATTAGTTTGCAGGTAATATTCTTTCTTTCTCCTTCTCTATTGAATGCCTGAATGCTCATTTATTTAGCAAGCACTTGCAAGCCCAATTATGTAGATAGAAAAATAGGCACGTTCTTATTAAAAAAAGAGCAAAATTGAATATTGTAGTAGGCTTTTTATGTTCTGAATACCCTCTACACTATGATTCAGATATACAATACGGCAATACAATTATTTTAAAAATATATAGGATATTATATGCATGAGATACACATTTAAAAATATATAAAAATTCATAAAATAATAAATATATAATTGCAATTCTGCAAATTCAAATTAAAAACATACTTCTTGGACTTTACTAAAAGCAACAAAATTGTATCTTATTGTCATTATAGTTTACTTTCAATTATTTACATATAGGAACAATATATCCATCTCATTTCTTCTTTGAAATGATTCACAAAGAGAACGATTTCCCCCTTTTATTCATCAGGTCAATGCTTTTTGTTTATACATGCTTATGCCTATGTGTTAGATGCAGTATTGTTCTTTTATAAAACACTTTAAAAGGTTGTATACTTTATGGATACATATTGGTGAAGTATCTGAAAATATCGGTATCAAATATGAATACGTGAAACAAATAGAAGTATCAGTGTATCATAACCTCTACCATTGTTTGTTGTATTGATTCCAATTTCTTATAAGAGGAGGGAGGACTGATATTTACAAGCAAAGTTCAGTGCCAGCAATTTGA