Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_30413	LG8	36920768	36921391	PREDICTED: ethylene-responsive transcription factor 1B-like	Map

Annotations

category		relationship type		keyword
Pathway		B 09132 Signal transduction		C 04016 MAPK signaling pathway - plant [PATH:ko04016]

SNP	Position	Effect	Amino acid change
G/T	36920899	synonymous_variant	p.Arg165Arg
T/C	36920962	missense_variant	p.Thr144Ala
T/A	36920964	missense_variant	p.Tyr143Phe
A/G	36920965	missense_variant	p.Tyr143His
C/G	36921068	synonymous_variant	p.Ala108Ala
C/A	36921217	missense_variant	p.Ala59Ser
G/C	36921232	missense_variant	p.Arg54Gly
G/A	36921263	synonymous_variant	p.Tyr43Tyr
A/G	36921359	synonymous_variant	p.Ser11Ser
G/C	36921363	missense_variant	p.Ser10Cys
A/G,C	36921364	missense_variant	p.Ser10Ala

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_30413.1

MDSTSFFNSSSSDFSSESSSPEAFSWEGYLPFNENDPEEMLLYGMIAGATTVERAADRAGSEESEAVQKEKSYRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGPAAILNFPVDIVRESLREMNYTVDSNEEGCSPVVALKRKHSLRRKIGVKKNNKQSSVDNAVVFEDLGPDYLEQLLMSSDRIPSSS*

CDS Sequence:
>Vu_30413.1

ATGGATTCCACCTCCTTCTTCAATTCATCCTCTTCCGATTTCTCCTCCGAATCTTCCTCTCCGGAGGCCTTCTCCTGGGAGGGCTACCTCCCCTTCAACGAGAACGACCCGGAGGAGATGCTCCTCTACGGCATGATCGCCGGCGCCACCACAGTCGAGCGCGCCGCCGACCGAGCGGGCTCTGAGGAGAGTGAGGCGGTGCAGAAGGAGAAGTCCTACCGCGGAGTGCGGCGGCGCCCGTGGGGGAAGTTTGCGGCGGAGATTAGAGACTCCACACGGCACGGGATGAGGGTGTGGCTTGGGACATTCGACAGCGCGGAAGCGGCGGCTTTGGCTTACGACCAAGCAGCGTTTTCCATGCGTGGCCCCGCCGCGATTCTGAACTTCCCCGTTGATATCGTTAGAGAATCGCTCAGAGAGATGAACTACACGGTGGACAGCAATGAAGAAGGATGCTCCCCTGTTGTCGCTCTCAAGAGGAAACACTCGTTGCGGAGGAAAATTGGTGTGAAGAAAAACAACAAACAGAGTAGCGTAGACAATGCGGTCGTGTTTGAAGACCTTGGTCCTGACTACTTGGAACAGTTGTTGATGTCCTCTGATCGTATTCCCTCCTCCTCCTGA

Promoter Sequence:
>Vu_30413::LG8:36921391-36923391(-)

TTTAAACTGTTTTTGTTAAATATTTGAACGTTTTCTTTAATTTATTTTCGTTATTTACATTCATCCCCACTCATTTATATAGAATATTTTCCTAACCATCCTTTATGTTTTGTATATAAAATACCTTTTTCATTTCTCGTTAATTTTCTTACGTTTTCTCTAATTTATTTTGAATTTTTTTCATATCTATATTTTTTTATTATTCATTCGAATAGTTTTTTCATTGATTTTAATTTTTTCTCATTTAATTCTCACTTATGTTTCTTTGTGATTTCCTGTTTACTAACATGTATTTAAGAATAGCGAAAAAAAGATTGACACAAAACAAAACAATACTAAATGTTAGACTTTCCCACCGTTAGATTTTTGCGAAAAAAATACACAGGTCTACGTTCAACGTAATCTATTATATGCATACAAAACAATAATAGTATTCTATAATTATTGTTAAAATGTTTGATAAATTATTTATAGAGAAAATGGCGTCATAATATGAGGTCAGCCACGACCACGAGAATGCATTTCTGACTGGCCGCCATCCACATCCACTTAATTGACCCACGTGTGCTTATCAATCCCCCTCTGTGGGTCCCACTTCGCACACTATACCATCCCCACTACGTCATTTTTTTACTTTTTTTTCATAAAGACAATGCTGCATCGCAAAAACTTTATGTTCTGCTCATAAATATCAATTAAATTATTTTTAACATAACATTAAACCATTTTTCATAATTAAACAATCTTTATTAAATCATACCACTCTTGTTTCTACTTAGAAAACTGTATGAATTTTTATTTAATTACAACTTTTTTTAAAATAAGTTGATGTAGTGATCGAATCTTTAACATAAAAACATTAGTCATAATAAAATTAAAATTACTTAAAATGATTTTTTTTTCATTTTATAGGATTTCTAATTTTATCCTTATAAAGTTATTCACTTTTATTACATGCGAATACCACATTTTTTTAATTAGTTGAGTGATGGATTTTGATAGATTCAAAAGTGTAAACGGGTTATTTTTATTTATTATAATTACTTAATTTGTCAGTGGCATACGTATAAACGAAGAATCCATCATCCGGAGATTACCGAGGTGTCCTGGTCCTTTGACGAGGTTGGTCCACTCATTTTTTTTTATCGTATGAAAGCAACACTATATAAACATACTTTTTTGTATTTTTGTATAATACAGCTTAACTATAATATTTAATTTTACGTAATTTAAAATTAAAATTATAGCTCCGTACATACCAAATATTGATTAGCATACCTGCAAAAGGATTTCCGTAGAAAATTCTGTCAAACAAGTGCATTGAAATATCTCATAAACCAAAATAAAATGTTGAATTATCAAATTAAAAATATTTAACAGAATTAACTATCGATAATAAACTAGAAAAAAGAAGTATAATAAAAAAAGTTAAATATTAACATCAAGATAAATTTAATTTTGTAATGTGTCCAGTTGAATAAAATAATTTGAATGATTAATTAAGTACATTAGAGTCCAATAAGCATGTATTATGAATGTAAATGACTCCATAGATTAATCATTAAGATGTGAAGATAACAATGAATGAATGATTATTATAACTGTATATCAGTTAAAGAAATTTATTGGCTGATGTAGTGGTTCATTAATAATATAATTAGTAATATTTAAAAATATAATAATGGTACCTGAGTGTTATTTATTAAGAGGAAAGGACATGTAATTGTTATTGAAGGTACGTGAAACAGAGAGAAAACAAAGTTGTCTTGTTAAAGAGACTATTATTATGTATGAATTTGGCATGGTTTTGCGTTTTTCCCCTTTTTCACCCAGTGTTTGATTGTCCGATTCGCTTTAGCGGCGTCTTTTACCATTTTACCATGGGCAAAACCGGGTATAAAATGAGGTGGTAGGAGCAGAAGAGACGAGAAAAACAGAGCAACTCAACACCTTACTTCTTCTTTTCACTCTTCACTCTTGTTTGTTTTCTGAACATAGAT

Gene Sequence:

>Vu_30413(-)