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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30318 LG8 35888088 35889407 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Pathway   B 09141 Transport and catabolism   C 04138 Autophagy - yeast [PATH:ko04138]
SNP Position Effect Amino acid change
G/C 35888543 missense_variant p.Gln152His
G/T 35888643 missense_variant p.Gly186Cys
G/C 35888896 missense_variant p.Gly270Ala
C/A 35888944 missense_variant p.Pro286Gln
T/C 35889083 synonymous_variant p.Phe332Phe
T/A 35889292 missense_variant p.Leu402His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30318.1
MEPPLQHQPSPPPSPRSLTILGKYQLTRLLGRGSFAKVYQARSLIDGATFAVKIIDKSKTVDAGMEPRIIREIDAMRRLHHHPNILKIHEVMATKTKIHLIVELAAGGELFARISRRGRLPESTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDGEGNLKVSDFGLSALPEHLKNGLLHTACGTPAYTAPEILRQNGGYDGSKADAWSCGLILYVFLAGYLPFDDTNIPAMYKKISRRDYQFPDWISKPARYVIYKLLDPNPETRMGLEALFGNPWFKKSLKPETAEESAFGWDNVYVKGCYYEGVKCSGVNAFDIISMSSGLNLTRLFETTSDGGSRREKRFTSSARVEVVEEKLKEVGGILGFKVEAGKAINGAIALLKGKVALVFEVLQIVPDQLLLVAVKVVEGALEFEEHHWGDWKNALQDLVLSWHNDDS*


CDS Sequence:
>Vu_30318.1
ATGGAACCGCCATTGCAACACCAACCATCACCGCCACCGTCACCACGCTCCCTCACCATCCTCGGGAAATACCAGCTGACGCGCCTCCTCGGGCGTGGAAGCTTCGCCAAGGTCTATCAGGCACGATCCCTAATTGACGGCGCCACCTTCGCCGTCAAAATTATTGACAAATCCAAAACCGTCGATGCTGGCATGGAGCCCCGCATAATCCGCGAGATTGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTTAAAATCCACGAGGTTATGGCCACAAAGACCAAAATCCACCTCATCGTGGAGCTTGCCGCCGGAGGCGAGCTCTTCGCTAGAATCTCCCGTCGCGGCCGTTTGCCGGAGTCCACAGCGCGCCGATACTTCCAGCAGCTGGTCTCCGCGCTCCGGTTCTGCCACCGCAACGGTGTGGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGGCGAAGGAAACCTCAAAGTCTCCGACTTCGGCCTCTCCGCTCTGCCGGAGCATCTCAAGAACGGCCTTCTCCACACCGCATGCGGTACGCCAGCGTACACAGCGCCCGAGATACTCCGCCAGAACGGCGGCTACGACGGGTCCAAGGCCGACGCCTGGTCCTGCGGCCTCATTCTCTACGTCTTCCTCGCCGGCTACCTTCCGTTCGACGACACGAACATTCCGGCGATGTACAAGAAGATTTCCCGGAGAGATTACCAGTTCCCTGACTGGATATCAAAACCGGCACGCTATGTTATATATAAATTACTGGACCCGAACCCAGAAACAAGAATGGGTTTGGAGGCTCTGTTTGGGAACCCGTGGTTCAAGAAATCATTGAAACCGGAAACGGCGGAGGAAAGCGCGTTTGGGTGGGATAACGTTTATGTGAAGGGTTGTTACTACGAAGGGGTTAAGTGTTCGGGTGTGAACGCTTTTGATATAATATCGATGTCTTCGGGGTTGAATTTAACAAGGCTGTTTGAAACGACGTCGGATGGGGGTAGTAGGAGGGAGAAGAGATTCACTTCGAGTGCTCGCGTGGAGGTGGTGGAGGAGAAGCTTAAGGAAGTGGGTGGGATTTTGGGGTTTAAGGTTGAGGCTGGGAAAGCCATTAACGGTGCAATTGCATTGTTGAAAGGAAAGGTGGCTTTAGTGTTCGAGGTGCTTCAGATTGTACCCGATCAGCTTCTTCTGGTGGCCGTGAAGGTCGTGGAGGGTGCGTTAGAGTTTGAGGAGCATCACTGGGGTGATTGGAAAAATGCCTTGCAAGATCTCGTCCTCTCTTGGCACAACGATGATTCATGA


Promoter Sequence:
>Vu_30318::LG8:35886088-35888088(+)
GCTACGTACTAGTTTTGTTTCAGTGATTTGCAAACCAAGTTACTGGAATGAAATGGTTAATGATAGTCATTTTTAGTCATATTAGTCATAATAAGTTCTTCCATTTTAAATTAAAAATTAAATGTTACAAAATGAAATAGGCTCAACAACATTACAAAAAGATTCATTGATATAAACACTTCTACTTTTAGTTTCAATATTTTATTCTTTAAATCCACAAGAAAATTCTTCAAAGGTTTCTTTGACAACAAAACGTCTAAACTCTTTTTTCAACACAACATCACAAACAACCTATAAAATATGAATACAATTCATTTCGGAAATAAAAAAAAAACTTAAATAGAACAAAAAAAATCAAAACATTAACCATAACCTTATCTAGAGCACTTATAACAAGATACTCACCTAACATGTAACAATCGCTAAAATTTTGTTATTCGACAATTGATCTTTGCATTGCAAATAAGAAAATGATAAAAAGATCATAACTGAAATATTTTCCAAACCATAAAATTGTCATACATCACCAAAATAAACTAAATGAGTTACTACGAAAACTGTTACTATGAAAACTAAATAAGGATGTTTTACCTACAACAAATATACACATCCAATTGTTGGGAAAGTGTGAGTCTAAGTCCCACAGAAGATATAAATGAGAAAATAGAGCACTATATATAGATGAAAGACTCGTTAACTCATTACCTTAAGATTTTGGGTAGAGAGTGGTGTCAATCCCTTATATGAGTTGGACTTATATCTCTTTGGTATCGAATCTTTCCGGTGAACCTCCTCCTCGTTAGACCCAATACCAATAACATGAAAATGACTTGTATTTCTGTCATTCCTCAATACGCACTACACAAGCTCCTAACCAAATATTCATACAATGAACTATCCTAATTATATTTACTCAAACTTTTCTTCATGTCCTTTCAACAAAAAATCATATATCACATTAACATGAATTTTTTTAAAACAAAAATACTTTCTTCACTCACTATTTATGCCAACCTCATTTAAATGAATTTGGTCTCTAATTACTTTTAGTCTCAATCCTAAACATGTATTTAATAAATTAAATCCAATTACTTTTGCAAAAGTAAAAAGTATTCCTCTATCCAATCCACTTACTACATAACTTATTTTGACAAAGTTGTTCAACACGATAAACCACCAAAACGATGTGTTTTGAATAATGTTTTTCGTTCAAAGCACCCAGAAATTTTGGTGTGCAAGAATGACAAAAAGAAATATACAAAAAAGAAATAAATAAACTTAGGTAAAAAAATTTAAGTCAACATAAAAGTCTATAATACAAACACAAATACCTTCCTGTCATAACTACATTCACCAACTTCATTGCATTTTTTTCATAGTTGATATATCCTGAAAAGCCACTAAGAACCAATATAATGTTTCGTATCGTATGACATGGCCACCACAAACAAAACTTCCATCAATAATAAGAGAATAAGGATTGAAAGAATGAAAATTACTATTAATGGGAGGAAGTTTCGTTTTAGAGAGAAGGAATAAGAATTTATTTGTCCTATGAGTTCAATAGAAAACACAATGTTGGAATTTCATATTCGAGCATGAAAAAAAAAACGTCTTCCTTAGCAACTGAAAAAATATGGAACTGAGTGGCGTCCTCCACCTTATTAAAATGTGGAAAGTAGTGTAGTCAACCATATACTTTGTTTCAATGACGACTCACCACTCACCACCAAGCACCAGCTAAAAATATACTACGCTCCTTCTAAGCTTAATTTCCTCTCTATTTCCCAAATCTCTATTTTTACGAAAGTATTTTACTGTCATTCAAAAAATAAAAGGAATTTTAATTTAGAGTGGAAGCCAACCGATGTATTCTCCTTCCCCCGCGGTGAAAGCGAAACATCCCAAACCCATACCAAAACTTCTATATAAACCCAATTTTTTGCCCATACACCTTGTCCGTGGGTTACAACACTCTTCCGTTGTTCAACGCACAACCA


Gene Sequence:
>Vu_30318(+)
ATGGAACCGCCATTGCAACACCAACCATCACCGCCACCGTCACCACGCTCCCTCACCATCCTCGGGAAATACCAGCTGACGCGCCTCCTCGGGCGTGGAAGCTTCGCCAAGGTCTATCAGGCACGATCCCTAATTGACGGCGCCACCTTCGCCGTCAAAATTATTGACAAATCCAAAACCGTCGATGCTGGCATGGAGCCCCGCATAATCCGCGAGATTGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTTAAAATCCACGAGGTTATGGCCACAAAGACCAAAATCCACCTCATCGTGGAGCTTGCCGCCGGAGGCGAGCTCTTCGCTAGAATCTCCCGTCGCGGCCGTTTGCCGGAGTCCACAGCGCGCCGATACTTCCAGCAGCTGGTCTCCGCGCTCCGGTTCTGCCACCGCAACGGTGTGGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGGCGAAGGAAACCTCAAAGTCTCCGACTTCGGCCTCTCCGCTCTGCCGGAGCATCTCAAGAACGGCCTTCTCCACACCGCATGCGGTACGCCAGCGTACACAGCGCCCGAGATACTCCGCCAGAACGGCGGCTACGACGGGTCCAAGGCCGACGCCTGGTCCTGCGGCCTCATTCTCTACGTCTTCCTCGCCGGCTACCTTCCGTTCGACGACACGAACATTCCGGCGATGTACAAGAAGATTTCCCGGAGAGATTACCAGTTCCCTGACTGGATATCAAAACCGGCACGCTATGTTATATATAAATTACTGGACCCGAACCCAGAAACAAGAATGGGTTTGGAGGCTCTGTTTGGGAACCCGTGGTTCAAGAAATCATTGAAACCGGAAACGGCGGAGGAAAGCGCGTTTGGGTGGGATAACGTTTATGTGAAGGGTTGTTACTACGAAGGGGTTAAGTGTTCGGGTGTGAACGCTTTTGATATAATATCGATGTCTTCGGGGTTGAATTTAACAAGGCTGTTTGAAACGACGTCGGATGGGGGTAGTAGGAGGGAGAAGAGATTCACTTCGAGTGCTCGCGTGGAGGTGGTGGAGGAGAAGCTTAAGGAAGTGGGTGGGATTTTGGGGTTTAAGGTTGAGGCTGGGAAAGCCATTAACGGTGCAATTGCATTGTTGAAAGGAAAGGTGGCTTTAGTGTTCGAGGTGCTTCAGATTGTACCCGATCAGCTTCTTCTGGTGGCCGTGAAGGTCGTGGAGGGTGCGTTAGAGTTTGAGGAGCATCACTGGGGTGATTGGAAAAATGCCTTGCAAGATCTCGTCCTCTCTTGGCACAACGATGATTCATGA

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