Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30288 LG8 35596903 35597648 PREDICTED: zinc-finger homeodomain protein 3-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   glucosinolate metabolic process, regulation of transcription, DNA-templated, glucosinolate metabolic process, regulation of transcription, DNA-templated, glucosinolate metabolic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein homodimerization activity, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
G/C 35596939 missense_variant p.Asp13His
A/C 35596940 missense_variant p.Asp13Ala
G/A 35596943 missense_variant p.Arg14Lys
A/T 35597104 stop_gained p.Lys68*
C/T 35597160 synonymous_variant p.Thr86Thr
A/G 35597182 missense_variant p.Thr94Ala
G/A 35597382 synonymous_variant p.Lys160Lys
C/T 35597477 downstream_gene_variant
A/G 35597519 downstream_gene_variant
G/T 35597625 stop_gained p.Gly170*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30288.1
MESSNLHADRRADRKIIIRYTECLKNHAASIGGNATDGCGEFIADGEEGTLEALRCSACNCHRNFHRKEIESSDSYITPLMIIPDTTQIGPILTQLSPHKSGSISPSDMSDEKDCENGMTKEVGNNATEKVKKRFRTKFTQEQKEKMFLFAERAGWRIQKLDESVCFREGNATFEY*


CDS Sequence:
>Vu_30288.1
ATGGAGTCAAGCAATTTACATGCTGATCGAAGGGCAGATAGAAAGATAATAATAAGATACACGGAATGTCTGAAGAACCATGCAGCTTCAATTGGTGGCAATGCAACTGATGGTTGTGGCGAGTTCATTGCTGATGGAGAAGAAGGCACGCTTGAGGCTCTCAGATGCTCGGCTTGCAACTGCCACAGAAACTTCCACAGAAAAGAGATAGAGTCTTCTGATTCCTATATCACTCCTCTGATGATTATTCCTGACACCACTCAGATAGGGCCTATTTTGACTCAGTTATCTCCCCACAAAAGTGGTTCAATTAGTCCTTCTGATATGTCTGATGAGAAGGACTGTGAAAACGGGATGACAAAGGAGGTGGGAAATAATGCAACTGAAAAGGTGAAGAAGAGGTTTAGAACCAAGTTCACACAAGAACAAAAGGAGAAGATGTTTCTTTTTGCAGAAAGAGCAGGGTGGAGGATACAGAAGCTAGATGAATCTGTGTGTTTTCGAGAAGGAAATGCAACATTCGAATATTAA


Promoter Sequence:
>Vu_30288::LG8:35594903-35596903(+)
TCTTTATTTAACGTTATTAAACCTTAGAAGGTAAACAAGCAATCCAAGGTGAATATTGCAATATGAAATCTAGAACCATCTTCGATGGTAGAGCTCGTTTTATGTTTTTAATACACTTTTTACAAGTTCACTAGTGTTATATGTAATTTAATAACTATAACTATTAGTATTTTTAGCTCCAATATTAAAATTTGTTCTGAATTCTTATATGATTTTTAATGAGTTTCACAATATATTATTATACTTTTTAAATAGTCTCTTTTGTCACTTGTTTTTTGGATAAAAATAAATTAAGTAGTGATAACCTGTGAAATCCAACCCATTTTACTACTCTGATTTTTAGTACAGTTGCAAGCAAAGTTTACACTTTACAAATCCTTCTTCTGTTCCAATTTCTCATTTTCATTATTCTTCATCATTGTTTACTTTTTGGATGGTCAAAATTTACATTCTCTGATATAACTGCTCGTATACAATTAACTCAGAATAATGTCACAAACAAGTTATTGATGAATTTATCACGAACATAGGCTATGATTATTGGAGGTGTTGGATGTAGCGGCTGTATGGAGTGGAGAGGACTTATTATGAGCAGCCTATAATTGTCACTTGTGCTTAGGGCCTAATCATTGGAGTAGCAATAATATAGTAGATGACACAGCAGCTTCTTGTTGTTTGGCACAGTCGCTGTTCAATTGTTATACAAAAGCTGTACAATGACAGTAAATATATTTTCAACTTATTACAACTATTACTTATTATTTACTTCTCAAATCATAGATATAGACTTGAATGCTGTGCTTTTATAGTTTTTAGAGAGAATTAACCTCACGATTTCTTTCCTCCACACCTCTTTCTTCACCTTTATTTTCTTAATTTGTTGGCTTTACAGTGTTAATACAGATATCATCATTAGTACCAAGAAATGAAGAATATTAACTTTAAATTTAATTATATATATACAAGTTATGAGAAATGAATACTGAGACATCATCACCATAAAAATATGTAAGTTTCATGTTCATTTGCCATGTCAATAATCTAGCTTCTGTTAAGTATAAATGACATGGAATCAAAGTAATATTGTTTTTGAAAAGAAACACATTCAAGTCCTGTTCCTTTTCAAAACAGGACCAATCTTTTTGAGATACATAAATAAAGGAAATATAAGACTAACATAGAACCACTTGCATATTGACAAATCAAGACTTTTCTATTAAGCTTGCCTAATTCCTTGCAATTGAAAATGATATCTACCTTTTTGTGGTAACTTATATAGAACATAGGTATGCAAATGGTGAGTGGGGACAACCAACCACAGTCCAAATCTAGGACAGTTCAACCCTCTTTTTGAGTAATGCAATTATTGCAGCTTGCAAAGCAATGGACAGTCTTTTCTTCTAAGTGGACAGTTCTCCACAAATATTAATCTCTTTCGGCTTCCTGTTTAACTTTTCTTCTTTTCTTATCTTTGTTTGGCAATCCTTTCACTAATTTAATCTTTTTAAAGGACAACATTCTAATAGCGTAAGCTTGATGTCTAACAGTGTATGCAAAGCAAAGCAATGGCATGCACCCAACTTTTCAACTGTCTCTACATACTCTCTAGTCTAAAACACATTTATGCTTTCTTTATTTCATTGTAATTTGGTTCTGAGGTCTCTCTCTATCTCACACGCTCAACACATACATAGAGACAAATCTGGACCATAAACTTCTGAGCTAGCTACTTTAATTTTCTAGCTATAAAGTGACCAATAAAATAGTGTATCAAATACCCTAAACACCTTTTTTTATTCTCTTTCACACCCTCAAAGTTATATATTTGTTGCTTCACTTACAAAATTCACAATCAAGACCTCGTGTACCTTTTTCCATCAACTCCAACTTCCTTATAAGTACTTGCAGCAACCTGTTACAGCTCTCATCAGTCTTCCTCATCAGATAAAGTTGCCCTTTTTGATTCTTTAATCAACACCAGTTGTAGAAGCTTCAACAAA


Gene Sequence:
>Vu_30288(+)
ATGGAGTCAAGCAATTTACATGCTGATCGAAGGGCAGATAGAAAGATAATAATAAGATACACGGAATGTCTGAAGAACCATGCAGCTTCAATTGGTGGCAATGCAACTGATGGTTGTGGCGAGTTCATTGCTGATGGAGAAGAAGGCACGCTTGAGGCTCTCAGATGCTCGGCTTGCAACTGCCACAGAAACTTCCACAGAAAAGAGATAGAGTCTTCTGATTCCTATATCACTCCTCTGATGATTATTCCTGACACCACTCAGATAGGGCCTATTTTGACTCAGTTATCTCCCCACAAAAGTGGTTCAATTAGTCCTTCTGATATGTCTGATGAGAAGGACTGTGAAAACGGGATGACAAAGGAGGTGGGAAATAATGCAACTGAAAAGGTGAAGAAGAGGTTTAGAACCAAGTTCACACAAGAACAAAAGGAGAAGATGTTTCTTTTTGCAGAAAGAGCAGGGTGGAGGATACAGAAGCTAGATGAATCTGTGGTGCAAAACTTTTGCCAGGAGATTGGAATCAAAAGAAGAGTCCTCAAAGTGTGGATTCACAATAACAAGAACACTTTTGCCAAGAGAAATCCCTCAACTAGCTAACTTAGCATGATACAACATCTTTGCTTTGTCTCATTATTTCCATTTGTTTGAAGATTTTTTCCCCAGTGTTTTGTTATAGACCCTTCCTAATTTTCTCCCCTTTTATGCAGTGTTTTCGAGAAGGAAATGCAACATTCGAATATTAA