Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_30267	LG8	35395381	35396565	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
G/T	35395598	missense_variant	p.Pro218His
G/A	35395708	synonymous_variant	p.Thr181Thr
T/G,*	35395712	missense_variant	p.Asn180Thr
G/A	35395742	missense_variant	p.Ser170Leu
T/A	35395773	missense_variant	p.Asn160Tyr
G/A	35395887	missense_variant	p.Pro122Ser
T/G	35395939	synonymous_variant	p.Thr104Thr
A/T	35396017	synonymous_variant	p.Thr78Thr
G/A	35396093	missense_variant	p.Thr53Ile
T/C	35396097	missense_variant	p.Asn52Asp
T/C	35396144	missense_variant	p.Lys36Arg
T/C	35396188	synonymous_variant	p.Thr21Thr
A/C	35396296	intron_variant
A/C	35396393	intron_variant
A/T	35396434	intron_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_30267.1

MDTVQCPQEMVVKPMEDIAATNTCPKVAGAVERKPKPQKEQPLNCPRCHSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSTFSSTPHNNSPDNKKLPDLVIAPHSQNPKNNIHQGQDLNLGFPATTPDFRNISELVRQNNNNSSNNNMSASASSSSSTTSNTTPTISHLSALELLTGITSTSTGFNSFMPVPVPADPNPSYACGFPLQDFKPTLNFSLDHGYASLHNIQSGRLLFPFEDLKQVSTTTTMDQKQQGDSTGYWTGMFGGGSW*

CDS Sequence:
>Vu_30267.1

ATGGACACAGTTCAGTGCCCTCAGGAGATGGTGGTGAAACCAATGGAAGATATAGCAGCGACAAATACATGTCCGAAGGTTGCAGGTGCTGTGGAAAGGAAGCCAAAGCCACAGAAAGAACAACCTCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTCGCTATTTCTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGCTCCAGGAAGAACAAAAGATCTTCTACTTTTTCTTCCACACCTCACAATAATTCACCAGATAATAAGAAGCTTCCTGATCTGGTAATCGCACCACACTCTCAAAACCCTAAGAATAACATTCATCAAGGTCAAGATCTCAATCTGGGTTTCCCAGCCACAACCCCAGATTTCAGAAACATTTCTGAATTGGTTCGGCAAAACAACAACAATAGTAGCAACAACAACATGTCTGCTTCGGCTTCTTCTTCTTCTTCAACTACCTCTAACACCACTCCTACAATTTCACACCTTTCTGCATTGGAGCTTCTCACTGGAATCACTTCAACTTCCACCGGCTTCAATTCCTTCATGCCTGTTCCCGTTCCAGCCGATCCAAATCCTTCCTACGCATGTGGGTTTCCTCTGCAAGATTTCAAGCCAACCTTGAATTTCTCTTTGGATCACGGGTACGCCAGCCTGCATAATATTCAAAGTGGGAGGCTCTTGTTTCCATTTGAGGACTTAAAACAGGTTTCCACTACCACCACAATGGATCAGAAGCAACAAGGAGATTCAACCGGGTATTGGACTGGAATGTTTGGCGGAGGATCATGGTAA

Promoter Sequence:
>Vu_30267::LG8:35396565-35398565(-)

TTTACATTCCAAAATGAGTAATATCACAAATACACTGATTATTATGCTTGAATTGTATATATTATTTTTTGAATTGTCTTTAGAATTTAATATCATTTTATAGTGAAATTTATTTAAATTTAAATTAAAAAATTATATATTTTTTATTTTTAAAAAACTTATAATTAAGTGAGTCACTGAGTCAATTCGTCTAACCCACTAACCCATGGTATAGTGAGTCGGGCCGGATTCGAATTTTTTCAGTTCGCTAATAAGCGAACGAGGTTCGGTTGACCACTAAATGACCAACTCATGGTTTGTCGGGTCAGGTCGAGTCGAGTTATCCATTTTGACAACTCTAATAAATTTATTGATCAATTTCAATTTGATTTATCAAGCTGCATTAAAAGAAAATTTAAAAATTGGTTTATAGATTTGTTCATTGGGTAAATTTTATTTTAAATATTAGGTACTTTAACAAATATTTACGCTTTAAAAAAGTATTAATTAAAATATATTTAAACCAACAAATTACTAAAACAATCAAGTTGTAATTGACTCATAATACTATGTTTCAATATAGTGATTATTTCACAATTTTAAGGATAAAGACGCTATTTAAATAATAAAATGAATGATTAATATATAATTTTCCATACATTCAATCCATTTTTCTTTTCTTTATTAAGAGGAAGAGAAAGCCAATCACTCTCTCATTTTCATGTTTACAAATTCTAAATAATTAAATCCAAACCAATACTATTTGTGCTTCCAGTTCTTTACACAGAGGACTGAATGATGAATTTTAATAATAATTTTGGTCAGTTAAAATAATGTACTTAAAATTTATATATATTATTGTTAATTAATAACGAATGTTAATTATTTATATTAAGAACTTATGAAAATAAAATTAAGAAGATTTCCAATTTTACTAAATATTAAAACATAAAATTTAATATAATAAAGAATAAATCAATCGATTCTATTTACCTTCCTCATGCTATTCTGTCATAGAATCTCATATACGTAAGCACAAGTATCATAAAAATAAAAAAGAACCTTAACATAAGTGTTATTTCAACATTAACTTGTTTTATCGATACCCTAATCATGTTTTCTTCTTAACTTTTTAATTATCACTTATAAAATATTTTTATTTATTATTTATATAATATTAATTTTCTCTTTTTATAATAACTCCTTTTATTTCAATCTTCAATAATTTAGCCTTGTACATTTATTATGGCATTATACGAAGTACATTGAAAAGTTATGTTTTTCTTTTTTATAAAAACTTAAAAAAAAATAAAAATAGGATATTTATTGTTACAAATTATTTATATATTAAATACATAAATTTTTCATACTTTTTATGTTTTTGAATTAATTTTGTTTGTTAATTTATTTTAATTAGGTTATATAACTCTTATTTTATTATTTTATATTAATAAAAAACACGTTTAAGATATAATAAATAAATTAAATAAAATATTTAAATTTTAAAATATATTTTTTAAAATATTTAATAAATTAAAAAGTTAGTAAGAGTTTAATTTAAAATATTTAAATTTATAAAAAAAATTAAAACTTAATTAAACATAAATTTGTTTCACTCGTTTATTTCTAAAACAGCTTAGACGAGATTTATCACTGAGGGAGAAAGAAAAATGAATTGGTTAGATATAATTTCACGTACACGTATTCCCACGTTTTTTTTAAACGTGTATTCTACGGTGTTGGGAATACGTAGAATATAATATTTAGAATAGAAATTATATGTATATGTTTTGTACTTTCCCTTATCTTCTTTCTGACTATTAAAACTGATAAAGTGGCAAAAAGTATTGGATTCATTCATAGACTCTTGCACAGGGTTCTATCATTCCCTTTTTTTCTGCTTCTGCAACGAGTTTCAACTAAAATACAAAACCTTCCATCATTTCTCCTTCTTTCAGCTTCATTTCACTGCACCTACCTTCATCTTCTCTTCATCTTCATCTTCATCTTCATCCAATTCC

Gene Sequence:

>Vu_30267(-)

ATGGACACAGTTCAGTGCCCTCAGGTAACACACTTACTTTTTGATTCCTTTTTTGCACCTGGTGCAAGTGAAACTACGTTATCAATTTTCTTTATCATATTTTCTACCTTTCGCTTTCTTACTTTTTTCCCTTTGCTTTTCCCACTTCAAAAGTTCTGCTTTAGTTTCTTCTTCTGCATCTTTTTCTTTTGCCATATATCATAGAATTATACACACAATTTCCTCCCTCTTCCTCAATCGTGAAAAGTTAGACCGAGATGTTTTGTGCTTGGTATGATATGTAGACCAGACACAGATGCATGGTTCGATTAATTAACATGTTTGCGCATGATGTTGCAGGAGATGGTGGTGAAACCAATGGAAGATATAGCAGCGACAAATACATGTCCGAAGGTTGCAGGTGCTGTGGAAAGGAAGCCAAAGCCACAGAAAGAACAACCTCTTAACTGTCCAAGGTGTCATTCAATTAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCTCGCTATTTCTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGATCCCTCAGAAACATCCCTGTAGGAGGTGGCTCCAGGAAGAACAAAAGATCTTCTACTTTTTCTTCCACACCTCACAATAATTCACCAGATAATAAGAAGCTTCCTGATCTGGTAATCGCACCACACTCTCAAAACCCTAAGAATAACATTCATCAAGGTCAAGATCTCAATCTGGGTTTCCCAGCCACAACCCCAGATTTCAGAAACATTTCTGAATTGGTTCGGCAAAACAACAACAATAGTAGCAACAACAACATGTCTGCTTCGGCTTCTTCTTCTTCTTCAACTACCTCTAACACCACTCCTACAATTTCACACCTTTCTGCATTGGAGCTTCTCACTGGAATCACTTCAACTTCCACCGGCTTCAATTCCTTCATGCCTGTTCCCGTTCCAGCCGATCCAAATCCTTCCTACGCATGTGGGTTTCCTCTGCAAGATTTCAAGCCAACCTTGAATTTCTCTTTGGATCACGGGTACGCCAGCCTGCATAATATTCAAAGTGGGAGGCTCTTGTTTCCATTTGAGGACTTAAAACAGGTTTCCACTACCACCACAATGGATCAGAAGCAACAAGGAGATTCAACCGGGTATTGGACTGGAATGTTTGGCGGAGGATCATGGTAA