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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30229 LG8 34987977 34990122 PREDICTED: serine/threonine-protein kinase At3g07070-like
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Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, pollen tube guidance, protein phosphorylation, pollen tube guidance, protein phosphorylation, pollen tube guidance, pollen tube guidance, pollen tube guidance
Cellular Component   located in   pollen tube tip, plasma membrane, nucleus
Molecular Function   enables   molecular_function
SNP Position Effect Amino acid change
T/C 34988417 missense_variant p.Ser399Gly
A/C 34988424 synonymous_variant p.Ser396Ser
A/T 34988584 stop_gained p.Leu343*
A/T 34988819 downstream_gene_variant
A/T 34989418 stop_gained p.Tyr142*
A/G 34989424 synonymous_variant p.Ile140Ile
G/A 34989493 synonymous_variant p.Ile117Ile
T/A 34989515 missense_variant p.Lys110Met
G/A 34989928 downstream_gene_variant
A/T 34989929 downstream_gene_variant
T/C 34989968 downstream_gene_variant
G/*,C 34990008 missense_variant p.Pro39Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30229.1
MNCFPCCATKKSLSKREHDAPPSPPEPAPAPAPAPAPAPAAAAAAAAEMKKQKSDDQISVDPENIKVKAFTFRELATATKNFRQDCLLDEGCFGRVYKGVIPATGQVVAVKQLDRNGIGKEILDAVSDLSLLQHENLVNLIGYCADGDQRLLVYELFSGRTLESRIFENKEDEAPLNWFDRMKILAGASKGLEYLHESSDPPVIFKDLKASSILVDNDFNVKLRDVGMTKLSGDKMNNGPPRLMGNNGYCAPEYVRTGQVTKKSDVYSFGVILLELITGRRAIDTTRPNEEQNLVAWATPLFRDPKRYPDMADPVLKKNFPDKDLNQVVAIASMCLQEEAEARPLISDVVTALSFLSAAPVAAPRKSSAGESESGSVSRKGSRRSSVDTDGRLPPVSSKNSRKGSKKSSLKLLSQKVSQKSSEEDLGQKSSKKSSKSSRKSSLRGLSQKSSKKSSSRKSSKESEDGSVSSSCRSSSLASDDERSVSGRSSMRLSQASDQSDSNYSSRRTEDADHNLLDRASTMESDVGSGHPFDQTSSSGSSVYSR*


CDS Sequence:
>Vu_30229.1
ATGAATTGCTTCCCTTGTTGTGCAACTAAGAAAAGCCTAAGCAAGAGAGAACACGATGCTCCACCATCACCACCCGAACCTGCACCAGCACCGGCACCGGCACCGGCACCGGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGAAATGAAGAAACAAAAATCCGATGATCAAATCTCAGTTGATCCTGAAAATATTAAGGTAAAGGCTTTCACTTTCCGTGAGCTAGCAACAGCGACAAAGAATTTCCGACAGGATTGCCTGTTGGATGAAGGATGTTTCGGGAGAGTATACAAAGGAGTAATTCCTGCCACCGGCCAGGTCGTGGCCGTGAAGCAACTCGATCGAAATGGGATCGGTAAGGAAATTCTGGATGCTGTTTCTGATCTAAGTCTGTTGCAGCATGAGAATCTGGTAAATCTCATTGGTTATTGTGCCGATGGTGATCAACGTCTTTTGGTTTACGAGTTGTTTTCTGGGCGCACTCTTGAAAGCCGTATTTTTGAGAATAAAGAGGATGAAGCACCATTAAACTGGTTTGACAGAATGAAAATACTAGCGGGTGCTTCAAAAGGGCTAGAGTACTTACATGAGAGTTCGGACCCTCCAGTTATATTCAAGGATTTGAAAGCGTCGAGCATCTTGGTGGACAATGATTTCAATGTTAAACTACGTGATGTTGGAATGACCAAGCTTTCTGGAGACAAGATGAACAACGGACCTCCAAGACTTATGGGGAACAATGGTTACTGCGCTCCGGAGTATGTAAGAACAGGTCAAGTCACCAAGAAATCAGACGTCTACAGTTTCGGAGTTATCTTGCTGGAGCTCATTACTGGACGAAGAGCCATTGACACCACCAGACCAAATGAAGAGCAAAATCTAGTTGCATGGGCAACCCCCTTGTTCAGGGACCCGAAGAGATATCCAGACATGGCGGATCCGGTTCTTAAAAAGAATTTCCCAGATAAAGATCTGAATCAAGTTGTTGCAATAGCATCCATGTGCTTACAGGAGGAAGCAGAAGCTCGACCTTTGATCAGTGACGTTGTAACTGCTCTCAGTTTTCTTTCTGCTGCTCCTGTTGCAGCACCCCGAAAGAGTAGTGCTGGTGAAAGCGAGAGTGGATCAGTATCCAGAAAGGGGAGCCGTAGATCATCAGTAGATACTGATGGCCGACTTCCGCCGGTTTCCTCTAAAAATAGTCGCAAAGGCAGCAAAAAATCTTCACTGAAACTGTTAAGCCAGAAGGTAAGCCAAAAATCTTCTGAGGAAGATTTAGGGCAGAAGAGCAGCAAAAAGTCCTCCAAGAGCAGCAGAAAATCTTCCCTGAGAGGTTTAAGCCAAAAGAGCAGTAAAAAATCTTCTAGCAGAAAGAGTAGCAAAGAATCGGAGGATGGAAGCGTTTCCTCAAGCTGCCGTAGCAGCAGTTTGGCATCAGATGATGAAAGGTCTGTGTCAGGTCGTAGCAGCATGAGGCTATCACAAGCGAGTGATCAATCTGACTCCAACTACAGCAGCAGAAGGACAGAGGATGCGGACCATAACTTACTAGACCGTGCAAGCACCATGGAATCTGATGTGGGAAGTGGTCACCCTTTTGACCAAACTAGCAGCAGTGGATCAAGCGTTTACTCTCGATAA


Promoter Sequence:
>Vu_30229::LG8:34990122-34992122(-)
ATCTCTCAAAGAATGCAAATGCATATAATATGACTCAAAAAGTCTACATATGTATCTGGTGTCCCTATATAGACACAAATGTTTAAGGCACATAAAAAACCTTAAAAGAAATTCCAAAGACAACGAACCTAAAAATAACTTCAAAAAAAATAAAAACATATTGTTTGCAATTAAAACAAAATTACAAAAAAAATTTAATTGCCTAAAATATTGTATAATTATGCTCCAAGCCATAATCTTCATGTCCCTTGAATTCCAATCTTCATAGAGTATCATGAGTCTTTAGAAGATTTGTTTTTCCAATTGTTTTCTCCTTAACCTTGTCATAGGTCATTTGAATTTAAATGATTATTCCTCAAGTTTTTCTTCTATAATATAAAGGGATAGTTGTCTATCAAGTTCGGCATGTAGGAATTTGATTTGGAAAAGGTTGGTCTATAGAAACTCGACTTGGAGGAAGTTAACTTTGAGGAGCTTGTATTGTTGGAGCTTGACATGTATAAGCTCCTCCTAAAGAAAGTCACCCTAGAGGTGGTCAACTTCAACAAGTTAGTTTGTAAAAACTTGGTACGGAGAATTCAACCTAAAGCAAAGGAAGAACGAACATATAATACAATTATTTTAATAATAACATCAATACAACTTAATTTTTATCATATCTTATTTGACTACTTTATTATTTTTATATTCAAAATGAAAGCAATTTTCATCCTATTCCATTCTTATGCATTTTTCATTTCTTAATTTTTATCCAAATAAATAAAAAAATATATATTTCCATAGTACAATTTAACAAAATTCATATATATATATGTATATATATTTTCTTATTACAAAAATATATAACTTTTTTTAATTTTTTATTTTTATAAAAAGAAAAAGAAAAAAAAAATTCAAAATTCAGTTACCTCGAAATCGAATTTCAAAACAGGTATTTTAGTCAGTATTTACAAAAACGAAGATTTGACTTCTCAAATATCAAATTCTAACCTAAGTACTATATGTGTGTGTAAATGTACAGTGCAATCCAGGAAATTTTAAAAGAAATATGTGTTACTCATCTGGAAAAGAAATCTACTTTTTTTTATCTTATGCAAATAATACAAAAATGCAATATATAATATTAGATAAAAACCATTTTCTTACCACAACGTAAATTAATTTAACTATTTTCACATCGGTAAAATATTATCTGTTTTGGTTTAAAATATCATGAATTTATTTCTAGTATCACTCTAAAAAAATCTCTTAATAATAGAGATATTTATATTTATATAAATGCATATCTAACTATTATTTTATTCAACGTGGGACTCATTGTATCTCAACACAAAACTATATTTTTATGAAATTATGTTATTCTTTTACTAAACAGACTCTTTTACGAAAGAGAAGAGAAAAAGAAAACTATTTTTAGCCTCTTGTATGGTTGAAATCAACCACGTAAAAAAAAAAGATATGTAGCTGTTGATATTGACCAGATTGACAAAAAAACGATAGCCATAGGTATGTATGTAGGTAAAATAGTGAAAAGTAAAAAAATGACCATAAATAACCAAATGAAAACAAAGGAAACGGTTCTTATTAACTGATTTTATCCTAAAAACTGAAACTTGACTTCCACATGTTTTGGAATCCATCTAAAACGACACCTCTCCCACTTTTTTCTCATTGCAGGAGATTAACCTTGTAGTTTATGCATGATTTCGCCAGCCTTTCTTCCTCCTCTGGTCATCTCTCACCCTTCTTGTAGTCTCTGCTCCTTTCATAGGACAAGGGTCCTTCAATGTTCTTTGGGGGGCCCTAGTCCTTTAGTTTTGCTACTTTTTATTCATTAATTCAACCTATAGTTCATACCTATTTTTATATGTAATTGAGAGAGATATTTTTGTCATTGTTTCTGGGTCAAAGTATATTTGTTGAGAAGGCTTTTGTCAAATTTCCACCATAGTTTCTTCCAGGTTGTTTATTTCGTATACACATTGTAAAAGGTTATAAGC


Gene Sequence:
>Vu_30229(-)
ATGAATTGCTTCCCTTGTTGTGCAACTAAGAAAAGCCTAAGCAAGAGAGAACACGATGCTCCACCATCACCACCCGAACCTGCACCAGCACCGGCACCGGCACCGGCACCGGCACCAGCAGCAGCAGCAGCAGCAGCAGCAGGTAAGATGGATCAATTTGATAATTAACGAAAGATGAGGGTTGATTTATAAATCATAAGAATGGCTAAGGTTGACAGAATATAATAGAGGCTTGGCATGAATGAAAAATTGAATATGATAGAGGTTTTATTCGCGACTTAAAACATTGTGGTACGTGGTTCCATTGGCATGCAGAAATGAAGAAACAAAAATCCGATGATCAAATCTCAGTTGATCCTGAAAATATTAAGGTAAAGGCTTTCACTTTCCGTGAGCTAGCAACAGCGACAAAGAATTTCCGACAGGATTGCCTGTTGGATGAAGGATGTTTCGGGAGAGTATACAAAGGAGTAATTCCTGCCACCGGCCAGGTCATATAAAGTCTTTGAATTCTTTCTTTTTCTTTGAAGTGCGAAAATAAGTTCTCAATAATTTCTGATTTCCTTTTTGTTTTCTTTGGATCCATCTCTCCAGGTCGTGGCCGTGAAGCAACTCGATCGAAATGGGATCGGTAAGGAAATTCTGGATGCTGTTTCTGATCTAAGTCTGTTGCAGCATGAGAATCTGGTAAATCTCATTGGTTATTGTGCCGATGGTGATCAACGTCTTTTGGTTTACGAGTTGTTTTCTGGGCGCACTCTTGAAAGCCGTATTTTTGGTAATTACCCTTTTCATGCTTTACTCGATATCTTTTCATCAGATTTTTTATGCATGTTCGATGTTGGTTTTCTGAGTTAGAAGCTTCAATCTAAAACATAGAGAGCACTTTGGGTTGTGTGGCAGAGAATAAAGAGGATGAAGCACCATTAAACTGGTTTGACAGAATGAAAATACTAGCGGGTGCTTCAAAAGGGCTAGAGTACTTACATGAGAGTTCGGACCCTCCAGTTATATTCAAGGATTTGAAAGCGTCGAGCATCTTGGTGGACAATGATTTCAATGTTAAACTACGTGATGTTGGAATGACCAAGCTTTCTGGAGACAAGATGAACAACGGACCTCCAAGACTTATGGGGAACAATGGTTACTGCGCTCCGGAGTATGTAAGAACAGGTCAAGTCACCAAGAAATCAGACGTCTACAGTTTCGGAGTTATCTTGCTGGAGCTCATTACTGGACGAAGAGCCATTGACACCACCAGACCAAATGAAGAGCAAAATCTAGTTGCATGGGTAAATTGTTTTTTTAACACTCTCTTTTGGATGCTGTTTATATCAGAATAATGAGGTATCGTGTAATTTAAGGACAAGGATGTCTGTTATATGTGATTGTGCAGGCAACCCCCTTGTTCAGGGACCCGAAGAGATATCCAGACATGGCGGATCCGGTTCTTAAAAAGAATTTCCCAGATAAAGATCTGAATCAAGTTGTTGCAATAGCATCCATGTGCTTACAGGAGGAAGCAGAAGCTCGACCTTTGATCAGTGACGTTGTAACTGCTCTCAGTTTTCTTTCTGCTGCTCCTGTTGCAGCACCCCGAAAGAGTAGTGCTGGTGAAAGCGAGAGTGGATCAGTATCCAGAAAGGGGAGCCGTAGATCATCAGTAGATACTGATGGCCGACTTCCGCCGGTTTCCTCTAAAAATAGTCGCAAAGGCAGCAAAAAATCTTCACTGAAACTGTTAAGCCAGAAGGTAAGCCAAAAATCTTCTGAGGAAGATTTAGGGCAGAAGAGCAGCAAAAAGTCCTCCAAGAGCAGCAGAAAATCTTCCCTGAGAGGTTTAAGCCAAAAGAGCAGTAAAAAATCTTCTAGCAGAAAGAGTAGCAAAGAATCGGAGGATGGAAGCGTTTCCTCAAGCTGCCGTAGCAGCAGTTTGGCATCAGATGATGAAAGGTCTGTGTCAGGTCGTAGCAGCATGAGGCTATCACAAGCGAGTGATCAATCTGACTCCAACTACAGCAGCAGAAGGACAGAGGATGCGGACCATAACTTACTAGACCGTGCAAGCACCATGGAATCTGATGTGGGAAGTGGTCACCCTTTTGACCAAACTAGCAGCAGTGGATCAAGCGTTTACTCTCGATAA

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