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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_30086 LG8 33584003 33587035 PREDICTED: serine/threonine-protein kinase CDL1
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Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, protein-containing complex assembly, protein phosphorylation, response to light stimulus, protein phosphorylation, response to cold, response to cold, tetrapyrrole metabolic process, protein phosphorylation, protein phosphorylation, protein-containing complex assembly, tetrapyrrole metabolic process, phosphorylation, protein phosphorylation, phosphorylation
Cellular Component   located in   mitochondrion, mitochondrion
Molecular Function   enables   protein kinase activity, protein kinase activity, protein kinase activity, ATP binding, protein kinase activity, protein kinase activity, protein kinase activity, ATP binding
SNP Position Effect Amino acid change
A/T 33584012 missense_variant p.Asn4Tyr
G/A 33584020 synonymous_variant p.Thr6Thr
T/A 33584059 synonymous_variant p.Ser19Ser
G/A 33584073 missense_variant p.Arg24His
A/G 33584159 missense_variant p.Thr53Ala
T/C 33584190 missense_variant p.Phe63Ser
T/C 33584196 missense_variant p.Ile65Thr
A/G 33584709 missense_variant p.Tyr143Cys
G/A 33584888 downstream_gene_variant
C/A 33584947 downstream_gene_variant
A/G 33585040 downstream_gene_variant
T/C 33585049 downstream_gene_variant
A/G 33585108 downstream_gene_variant
C/G 33585110 downstream_gene_variant
C/A 33585802 missense_variant p.Pro260Thr
T/A 33586133 downstream_gene_variant
A/G 33586444 downstream_gene_variant
A/G 33586459 downstream_gene_variant
T/A 33586505 downstream_gene_variant
T/A 33586525 missense_variant&splice_region_variant p.Leu356His
T/C 33586580 synonymous_variant p.Arg374Arg
C/T 33586681 downstream_gene_variant
C/A 33586835 downstream_gene_variant
T/A 33586840 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_30086.1
MEVNTTATVPAGPPAKNHSFTQHRLHSERHRHSHGHFPTKTILITVSFVTLVTVLFVIFVVLFLIRRQKSSSKSGTCKEDSTELHDTSSRLITSSTLNSSPEVKSGCLHGGNLGRTPAPTFRGVQVFTYRELEIATDGFSERNMIGGNGGHGLMYRGVLSDGTLAAIKLLRSEGKQGERAFRIEVDLLSRLHSPYLVELLGYCADQHHRLLIFEYMPDGTLHHHLHSPNDQTQPLDWWARMRIALDCARALEFLHEHAVSPVIHRDFKTNNVLLDQNFRAKVSDFGLAKMGSEKKNGQVSTRVLGTTGYLAPEYATGKLTTKSDVYSYGVVLLELLTGRVPVDIKRAQGEHVLVSWALPRLTNREKVIEMVDPALRGQYSKKDLIQIAAIAAMCIQPEADYRPLMTDVAQKHEQYHTQWGAPPNWQGPMEFPHLYSLK*


CDS Sequence:
>Vu_30086.1
ATGGAAGTTAATACTACGGCCACCGTACCTGCAGGGCCACCAGCTAAGAACCATTCTTTCACACAGCACCGCTTACATTCAGAAAGACATAGACATAGCCACGGCCATTTCCCCACCAAAACCATTCTCATTACCGTCTCATTCGTTACCTTAGTTACGGTCCTATTTGTCATTTTTGTGGTCCTATTCTTGATCCGTCGCCAAAAATCTTCCTCCAAAAGTGGCACTTGCAAAGAAGACAGCACAGAGCTTCATGACACAAGCAGCAGGCTCATTACTTCATCAACGTTGAATTCTAGCCCAGAAGTAAAGAGTGGGTGTCTTCACGGGGGAAATTTGGGCAGGACCCCAGCACCTACATTTCGAGGAGTCCAAGTGTTCACATATAGGGAACTAGAAATTGCTACCGATGGATTCAGTGAAAGAAATATGATTGGTGGTAATGGAGGACATGGCTTGATGTATAGAGGAGTTCTAAGTGATGGCACTTTGGCAGCAATTAAGTTGCTTCGCAGTGAGGGTAAGCAAGGGGAACGTGCCTTCAGAATAGAGGTCGATCTCCTAAGTCGCTTGCACTCTCCATATTTGGTGGAGTTACTTGGCTATTGCGCTGACCAACACCACAGGTTATTGATTTTTGAATACATGCCCGATGGTACACTTCACCACCATCTTCACTCCCCCAACGATCAAACTCAACCGTTGGATTGGTGGGCCAGGATGAGGATAGCCCTTGATTGTGCCAGGGCACTGGAATTCCTTCATGAACATGCAGTGTCTCCGGTGATCCACAGAGACTTCAAGACTAACAACGTTCTGCTGGATCAAAATTTCCGTGCCAAGGTGTCTGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAAGAACGGTCAGGTTTCCACCCGTGTATTGGGGACCACTGGATATCTGGCACCAGAGTACGCCACGGGTAAGCTTACCACAAAGTCAGATGTTTACAGCTATGGTGTGGTTCTTCTCGAACTCCTCACGGGACGTGTGCCTGTTGATATCAAGCGGGCCCAGGGAGAACACGTCCTTGTCTCTTGGGCTCTTCCACGGTTGACAAACAGAGAAAAGGTGATTGAAATGGTTGATCCAGCTCTACGTGGACAGTACTCAAAGAAGGATTTAATTCAGATAGCTGCCATTGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCGCTCATGACAGATGTTGCCCAAAAACACGAGCAATATCACACTCAATGGGGGGCACCACCGAATTGGCAAGGTCCAATGGAATTCCCTCATCTCTACAGCCTTAAATAG


Promoter Sequence:
>Vu_30086::LG8:33582003-33584003(+)
ATAATAAAAAAAAGGTGAGGGTTATCAATCTTAATGAAATATAATTACAATTTTATAAAAATAAATTACTTTGAAATTAAGAAAATGTAGTTGGTATCAACCATGACGAAAGTATGATTTGTTGTTGATGACTGTCACTAGGGACAAAAACGATTCACATAGATTTAGTGACAATGTGTTATAATCTTATTTGAGTGAAAAGAGAATATGTCAATTATTCAGCCAAATCTTATACTGAGTAATATGAAAAGGAAAAAAAAAGCAAGAACAAATAGTAGATTTGATAATTATACAACTCCGTAAGTCTCTCAAGTGTATTGAGAGCTTAAGTAATAATGTGTTACGAAAAAGTTTAGAATTTTGTTAATAAAATTATACAAATACAAGAAAATTTGTCATTTTTTTTCTAGAAAGATTGTACAAGAAGAATTGCAATTTTTATTCAGAAAGATTGTATAAAAAGGTTTATAATTTTTGTGAGAAAAAATTATAAATTTGTATATTTATTGATTTTAATATATTTTATGTTTTGGCACCTTCAAAAACTTTATACATCTATCTCGGGATCCAAAATTTTTTATTTTCTGAAGATGCGCCACTAAGAACTTGTATAAAATAATTTGTGAATAATGGCATTTATATTTTTAGGAAAGGTAATTTATTTTTATGAAATGTGATATTAAGTTGATTGAGTGGAATTTGATGTAGTATTGGTATTTATTTAGTAGATAACCCTAATGTTGTGGTAAGAGGAAACGTGTTGATTAGTTGTAAATGTTATTTGGTGACATGGGAAGGAAGGTAGGGCATTAGCAAATGTGTTTAAGTTTGAGAGAATGTTTCCCCTTTTGGTCTTTTCACGACTTCACTTTTTGCACGACTCAAAGGCACGTGATTGCGAGCCATATGATTGCCAATTTTCCCTAACAATCCATGTGGGGGCTTCTTCTTTCCACTCCATACAATTTACCTTTTTTAAAAAGTTTAACTATGACAAAATATGCCTATTTCACTCCAACATCTCCTTAAAATGGAAAAATAGAAAGAGAAAAAAGAAATAATAGAAAAATGGTTTAATTAAAACAAATATCATTTCAATGGATAGAAAGAAGAAAACATAAGCTAAAATGTGCATAATCAGGTACTCATCCTGAAAAAATAACAAGCAGGGGACGAAGACCAGGGTAAAATAGCATATTTCAGCTGCTAATTTAGATTAGCTAAATGCAGCAAGTTTATTTGTCATTTTGTCCCCTTCTTTAACTAGCCTTCAAGCCAAATGAAGAAACTAAATCATATAAAATGATGCATGATGGAAGTGGTTTACTGAACCAGGAACTGGAACTGGTTGTTATTGAATTCGGGGATTTTGAGTTATGCAGGTGGTAATTGGATTGTTGTTATTGGCAGTTATTGGTGTGAGATGGCAAAGTTACCATACAAACTCACCTCCTTGCTCCACTCTTAACAGTGGTGGAACTGGTTGACCGGTGACCACGCCCTGCAGCAAAAGCAGATATAAATTGATTGATCAGCCAGCCAAAAGCATAATTATCTTTTCTGTTTTCTATTTCCAAAGAAGACCAAGAAAAAGATACGCTACAAATGCATTCTTGTTTTAGGAAAACAGAATGCGTATGATATAAAATTAGGGAATTATTAGAGAGAGCAAGAGTGAAAGATTGTGCAAAAGCTTCCGAGATTTTCTTATGCAAAGAAAAAGACAATTCTTCAGAAAATAACAGAAGAAGAGACAAAGGAAGTACACCAAAACCACTTAATTAAATATTCACGAGAGGCTGGCTTGCCCTCCTAGGAAAGGAGGCTTACAACTAGCAAAATGCTTGCACCCTCATTCTTTCGTTTATTACTGTAAACAAAATCCATTTCGGCATTCCCCACTCTCCCCATCCTCTTTTATTTCCTGCCTTCCAATCTCAAACTTCTTTCTCACCTCAAACACACAACCCATTTACTTTTTTTCTCTCTGTTGTCAGTCA


Gene Sequence:
>Vu_30086(+)
ATGGAAGTTAATACTACGGCCACCGTACCTGCAGGGCCACCAGCTAAGAACCATTCTTTCACACAGCACCGCTTACATTCAGAAAGACATAGACATAGCCACGGCCATTTCCCCACCAAAACCATTCTCATTACCGTCTCATTCGTTACCTTAGTTACGGTCCTATTTGTCATTTTTGTGGTCCTATTCTTGATCCGTCGCCAAAAATCTTCCTCCAAAAGTGGCACTTGCAAAGAAGACAGCACAGAGCTTCATGACACAAGCAGCAGGCTCATTACTTCATCAACGTTGAATTCTAGCCCAGGTAACTAGCTTCCTCGTCACATGATATCAATGAATTGCAAACAGTATCTTAAATACTAATTAGTGAAGCAATACTATAACTATGTGCAAACTTAGAAGAGTTAATTTGCTAGCAATTACAACTGCATAACTTTCCAGACTGCAGATGATCATATAAATTTGTCTCTAGCATATCATTAATTCATTAGTTGTTCTTAACATTAATTCAACTAGTCTTTGAGGGGTGAGGCTTTAAATTCAGAAGCTAATCCATAAATGCTTGGAGACATTTATTGTAGAAGTAAAGAGTGGGTGTCTTCACGGGGGAAATTTGGGCAGGACCCCAGCACCTACATTTCGAGGAGTCCAAGTGTTCACATATAGGGAACTAGAAATTGCTACCGATGGATTCAGTGAAAGAAATATGATTGGTGGTAATGGAGGACATGGCTTGATGTATAGAGGAGTTCTAAGTGATGGCACTTTGGCAGCAATTAAGTTGCTTCGCAGTGAGGGTAAGCAAGGGGAACGTGCCTTCAGAATAGAGGTGAGTCAGTGTGCTTCATTTAATGAGTTACTATATCCTCTTCTTTTCAGCATGCAGAGATTGAATTATTTCTTGTTGTTACTTGCACCTCTCTCTCTCTCCCAATGTCTCCTTTCCTTGTATTAGATCCAGTTTGTTCAGAGACTTTGTTTTTGTCTTTTGTTAAGCTCAAACTAGTATTGCTTGCCTAACAAAATTTGTAAGTCGTAACGAAATGTTTACATTAATGTGAAAGGAATTTTACAAACTATCACGTGACAAACTTCATATCCTACTAGCAGATTATTTATCCCTTAATGGTTTGACATTTGACTCCAGCAATTAGGGATATAAATTATTCTTAGGTTTTCTATATATAATATCTTAAAGTTTTAACCTTTCTGCATCTTCTAACCTAGAAATTTTTGTATAGTGTGAAACCATGTCAAAGATTAAAAAAATCATTCACAAAATTAAAATAAGTTAAAAAGATTTAAGTCATTTGAATAATGCACTACTATTGAATCAAAATATTAATAAAATTTATTCATAGGTCATTAAAATACAGACAATAAGACATTTCCCGTCAGCGATTATCCTTTTAAAAGAAATCTCTGGCGTTTTGTAACCAAATTTGGGACCATCAAAATTGGAATGAACATCCATTTACCTTTCTATCAGTCCATCCCACTTGCCAACTCATATTGTGAGCTTTATTCAAATCCAGCACATGGGTGTGAAGACTAAATGACATTTATTGCAGGTCGATCTCCTAAGTCGCTTGCACTCTCCATATTTGGTGGAGTTACTTGGCTATTGCGCTGACCAACACCACAGGTTATTGATTTTTGAATACATGCCCGATGGTACACTTCACCACCATCTTCACTCCCCCAACGATCAAACTCAACCGTTGGATTGGTGGGCCAGGATGAGGATAGCCCTTGATTGTGCCAGGGCACTGGAATTCCTTCATGAACATGCAGTGTCTCCGGTGATCCACAGAGACTTCAAGACTAACAACGTTCTGCTGGATCAAAATTTCCGTGCCAAGGTGTCTGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAAGAACGGTCAGGTTTCCACCCGTGTATTGGGGACCACTGGATATCTGGCACCAGAGTGAGTATTACAAGTGCCCCATTTCATCTGTCATTTGGAAGCGCCCTGCCTTATCTTCATTCTCCACCCAATCCCAGTAATTAACTTACAACGTTAAATAAAGAACCTTGCACATGGTCATAGTCAAGTCCTTATCAAGCAGGCTGTGATTTTGAATTTTATCTATGTACATGTCATAAAAAATTTATACTGCACACCATTCATGATATATTTACAACTTCTTTCATAAATTATTGCATAAATTTAATTTGTCCCTTAAATTTGGGCATGATGTAGGTACGCCACGGGTAAGCTTACCACAAAGTCAGATGTTTACAGCTATGGTGTGGTTCTTCTCGAACTCCTCACGGGACGTGTGCCTGTTGATATCAAGCGGGCCCAGGGAGAACACGTCCTTGTCTCTTGGGTTAGTAAATAGCACCCTGCAATTTTGAATAGAATAAAATTGATTATGCAACTTTTGTTTAAAGAAATCAAAGGAGATACAAACAGAGTTGAGAATTAAGTTTCTAGTATTGCCAAATATTAATTTTGTAACATAAGATTTTATGCATTCACCAGGCTCTTCCACGGTTGACAAACAGAGAAAAGGTGATTGAAATGGTTGATCCAGCTCTACGTGGACAGTACTCAAAGAAGGATTTAATTCAGGTCAATTTTTCGTTTAGTCATAGATTCTCTCATCCTCATCACTGTCACTTAATGTCTTGGACTAACCATACTTTTCCTATCAAGTAACATTTGCTTTCTGCTTCTATGGGATTTTGCAGATAGCTGCCATTGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCGCTCATGACAGATGTTGTACAATCACTAATACCACTTGTTAGGAACCCATCCTCCCTTAGTTCTAGCTCCCTACGATTTCAGAAACAAACACCAAAGAGCAGAAGCAGCCTAGAAATAAACTAACCTAGTGTTACACTAAACTAGCCCTTGGACAAACATTAGGCCCAAAAACACGAGCAATATCACACTCAATGGGGGGCACCACCGAATTGGCAAGGTCCAATGGAATTCCCTCATCTCTACAGCCTTAAATAG

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