Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29988 LG8 32668663 32673233 PREDICTED: homeobox protein knotted-1-like 1 isoform X2
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 32668735 5_prime_UTR_variant
C/A 32668791 5_prime_UTR_variant
A/T 32668984 5_prime_UTR_variant
G/T 32669886 missense_variant p.Gln129His
T/A 32670194 intron_variant
C/A 32670303 intron_variant
C/T 32670334 intron_variant
G/A 32670369 intron_variant
T/G 32670386 intron_variant
T/G 32670455 intron_variant
A/T 32670489 intron_variant
A/G 32670512 intron_variant
T/C 32670561 intron_variant
A/G 32670611 intron_variant
A/G 32670622 intron_variant
T/C 32670799 intron_variant
C/T 32670817 intron_variant
C/T 32670863 intron_variant
T/C 32670877 intron_variant
G/A 32670909 intron_variant
C/A 32670969 intron_variant
T/G 32670992 intron_variant
A/T 32671161 intron_variant
G/C 32671163 intron_variant
A/G 32671235 intron_variant
A/T 32671258 intron_variant
T/C 32671387 intron_variant
G/A 32671473 intron_variant
A/T 32671701 intron_variant
T/A 32671866 intron_variant
T/A 32671892 intron_variant
C/A 32671908 intron_variant
T/C 32672200 synonymous_variant p.Phe220Phe
A/C 32672208 missense_variant p.Lys223Thr
A/G 32672352 intron_variant
T/C,* 32672414 intron_variant
G/T 32672527 intron_variant
A/C 32672927 missense_variant p.His304Pro
T/A 32672967 3_prime_UTR_variant
T/A 32673056 3_prime_UTR_variant
A/T 32673057 3_prime_UTR_variant
T/C 32673116 3_prime_UTR_variant
G/A 32673155 3_prime_UTR_variant
T/C 32673160 3_prime_UTR_variant
T/C 32673184 3_prime_UTR_variant
C/A 32673202 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29988.1
MENFYKLNSLLSCTEDVVRGVNVNVSSAAASELNLGLVANNFLQLEEPESSDMSERFIKTQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARESHPTHALREIGDDPELDEFMESYCEILHRYKQELSKPFNEATLFLCSIESQLSNLCKGTLTLPLDNNRSDEAAGTSEDELSWEKMETVEGVEESSGSRPGDQELKEILLRKYGGYLSSLRKEFLKKRKKGKLPKEARRILLDWWSTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSAIGRGHM*

>Vu_29988.2
MEVVIFNCWKVGAPPELASLLEEIARESHPTHALREIGDDPELDEFMESYCEILHRYKQELSKPFNEATLFLCSIESQLSNLCKGTLTLPLDNNRSDEAAGTSEDELSWEKMETVEGVEESSGSRPGDQELKEILLRKYGGYLSSLRKEFLKKRKKGKLPKEARRILLDWWSTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSAIGRGHM*


CDS Sequence:
>Vu_29988.1
ATGGAAAACTTTTACAAGCTCAACTCTCTCCTATCTTGTACCGAGGATGTTGTTAGAGGAGTCAACGTCAACGTTTCCTCCGCCGCCGCATCTGAATTGAATCTAGGACTTGTGGCCAATAACTTCCTTCAGCTAGAAGAGCCAGAAAGTTCCGATATGTCGGAACGATTCATCAAGACCCAGATCGCCACTCACCCTCTTTATCCAAATCTAGTATCTGCTTACATAGAATGCCGAAAGGTTGGAGCACCGCCGGAACTCGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCAACGCATGCTCTTCGTGAGATAGGAGACGATCCCGAGCTTGACGAGTTCATGGAATCGTACTGCGAAATTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCAACGAAGCGACCTTGTTTTTGTGTAGTATCGAATCACAACTCAGCAATCTTTGTAAGGGAACACTTACATTGCCACTGGATAACAACCGCTCAGATGAGGCGGCTGGGACGTCAGAAGATGAATTGAGTTGGGAGAAGATGGAAACAGTGGAAGGTGTGGAGGAATCTTCTGGGTCTCGTCCCGGTGATCAAGAGCTTAAAGAAATACTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTAAGAAAGGAATTTTTGAAGAAAAGGAAAAAGGGTAAACTTCCGAAGGAGGCAAGGAGGATACTCTTGGACTGGTGGAGCACTCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAACTATCAGAAATGACAGGACTTGATCAAAAGCAGATAAACAATTGGTTCATCAACCAAAGGAAACGGCATTGGAAACCATCTGAAGACATGCGATTTGCGATTATGGATGGTGTAAGTGGCAGCGCCATAGGTAGAGGACATATGTAG

>Vu_29988.2
ATGGAAGTTGTGATTTTTAACTGTTGGAAGGTTGGAGCACCGCCGGAACTCGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCAACGCATGCTCTTCGTGAGATAGGAGACGATCCCGAGCTTGACGAGTTCATGGAATCGTACTGCGAAATTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCAACGAAGCGACCTTGTTTTTGTGTAGTATCGAATCACAACTCAGCAATCTTTGTAAGGGAACACTTACATTGCCACTGGATAACAACCGCTCAGATGAGGCGGCTGGGACGTCAGAAGATGAATTGAGTTGGGAGAAGATGGAAACAGTGGAAGGTGTGGAGGAATCTTCTGGGTCTCGTCCCGGTGATCAAGAGCTTAAAGAAATACTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTAAGAAAGGAATTTTTGAAGAAAAGGAAAAAGGGTAAACTTCCGAAGGAGGCAAGGAGGATACTCTTGGACTGGTGGAGCACTCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAACTATCAGAAATGACAGGACTTGATCAAAAGCAGATAAACAATTGGTTCATCAACCAAAGGAAACGGCATTGGAAACCATCTGAAGACATGCGATTTGCGATTATGGATGGTGTAAGTGGCAGCGCCATAGGTAGAGGACATATGTAG


Promoter Sequence:
>Vu_29988::LG8:32666663-32668663(+)
GTTGGCTCACCTTGTAAGTTATAAATGAAATTTTTATCTGCGATGATTGTATATGTATACCAAGACATCATACTGGAATAGATATTATTATATATGTTTACATGGATGCATGGAAATGAGGAGCTTTGGAAAAAAGATTTTTTTTTTTGTGTATTTGAATTTAATTAAGATAAAACTTATTTTGAAGTCATGTATACTTTAATTTAAAATTTTGGATGGTTTTCTTAATTTTGAATGATTTAAATAAATAAAATTTTAGTTTTCGCTCGTAAAAATTGAAATCAGAATTGCAAAAATAAGTGTTTTTGAAATTGACAAATTTCATTGATCTTTGATGTGATATCAATAATGATGTTTTGAATGAAGATTCCACGAAAATATTATCCTGACTTTTTGTTAGTATTTTACTCAGAGAAAAATGTCTAATTATGAAAGTGGGAGGAGATTCATATTTGGAGATTCATTAAGACATCATACTCATAAATATAAATTTTATTCTAGAAAAGATATGTTATACAACTTGATACATTTTACAATTGATCATTTACATTGATAGTAAAATAATCATCATTAAAAATATGGTATTATTGTTAAATTAATTGGAAAACATTATGTCATTTATTAATTTAACCAATAAAAAACAAGTTTTACTAACTATGTACTTTACAAAAATTGGTTTCTCCATAGACATACATTTGAATATTACATTTTTTATAATTTACGTAAAATTTAAAAGATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGATCCAAATGGATCAAAAAATTGAAATGGAAACTAAAACTTTCATATAATTTAGAAAAAAAACCTAATTAATCCAATATTTAAATTTAAATATGTTACATTAACATGTTTTAATATTCTTTAATTACACTTACCATTTTTACCTTTTTTTTTATATATTTATAACAATCATCTCACGCACACATATAAATATGATACGGTAGAATTTAAGGTTTACGATTTAATCGGTGGAGATAAATACGTAAAAGAAGAGAAATAAGCGCATTTGATAAACATATAAAAGTAAGTGAGACGAAAATAAATAAAGTGATAAAAACAAGTAAAAGATAGAATTTGTTTAATTTAAAATAAATAATAAAAAAATATAAATGTGTTAATAGCATCAGATAAAAATCAATACTACAAGTCACACAAATTTTAGATTTTATTCAATTAAATAAATGCTTGTATATAGCATAAAAAAAATCCCGTAAAATTTACGGATCTCATAGATAAACGCAATCTAATTGTACAACTCTCCCCGCCGAGAACTGTTGGTTGACAAAAAGGCTTACTTAAGGCTAGTAAGATATAATACGAGAATAGCTGATTTTTTTGTCATGAGTAGAAGATCGAAAATAGTAAGTTAAACCAAAAAATAAATAAAACTTTCAAATAAACTAAAACACTCCACTACATCCATTGATGTTCTTAAATTAATCCTGGTGAAAATGACACATATTTTTGAGAAAAACAATAAATTGTAAGGATTAAAATTTTGAATCAGAGATGAATTGTTCGTTAAAAAAAAACCTACAAAATATTCATTAGATATGCACCACGTATGATCCGTAGATTAGTTGGAGGTGTCACGTGATGTCCGGTGATCTTAGAAAAAAAAAATGTAATACAATTATTTTTGTTGTGTGTGAAGAAAGTGATTGTTATGGAGGAGTACTCCTGATAGGAGTAGCAGATGGTTGAAAGTAGAAGTGGAATTGAGAATACTTACTGTTACTGATAAGCCGTAACAAGAAGAAGAAGAAGAAAGCGTGTGTGTGAGGTTGGAATTATTAGCAGAAGCAGATGATAATAGCTACCTCCAAACTTGCATGCAGGTAGGTGGACCCATACACTAGAGTCACCAATCAAATTTAGTCACGTGGCGATATGTCACGTCAGGGTGAAAATCAGTGACTGACGTCTACAAATACGGCCTATACATCACCTACATGCCTA


Gene Sequence:
>Vu_29988(+)
ATGTCTTTGCAGAGACACACCTTAACCTTGTCAAATCCTTTCTACTGTTTCAGTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCACTTCCCACTTACCATTACTCTCTCTTTCTCTCTCTTTTCCTTTCTTCCTTTTCCCCAGGTTTTTATTGGAAAAGAAAAACAAGGTCTCGTCCCTTTCCAGGTGCCGTAACAGCTCCACTTTCTTCCCCTTCTTCACCATCATTCCTTTTCATCAACTCCACTTACCCTTCTCTCTCACCGCATCACTCCATCAACAACACACAAAAACAACCTCAAACAACACAAAAAAGAAACAACTTCCCCTTTCCGCTTCTTCACACTCCCACCTGATTTCACTACCTATATTCTCATTTTCAATAAACTGTTGCATGATTTGCACTGCGTGCTAGATCTCACACCATGTCCTCTACTTTTTAAACTTTGCTTCTGTGCAAATTCTCTGCTTATATATATATATATATAGTTGCTGACTGAGAAGAGTGGTTTTCAGTGGAGAGTAGCTAGGGATATATATCGATGGAAAACTTTTACAAGCTCAACTCTCTCCTATCTTGTACCGAGGATGTTGTTAGAGGAGTCAACGTCAACGTTTCCTCCGCCGCCGCATCTGAATTGAATCTAGGACTTGTGGCCAATAACTTCCTTCAGCTAGAAGAGCCAGAAAGTTCCGATATGTCGGAACGATTCATCAAGACCCAGATCGCCACTCACCCTCTTTATCCAAATCTAGTATCTGCTTACATAGAATGCCGAAAGGTTATGCCACTGCCATATCAATTGTCTTTTCTTTCCTTTTTTCAATTAATTCTGGTTCTTCTCTTTGTGCTCTATTCTCTATGCCTAATATTAACAGCCAAAGTTACAGAAATTCTGCTGTGAATATTAAGAATAAATGGAAGTTGTGATTTTTAACTGTTGGAAGGTTGGAGCACCGCCGGAACTCGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCAACGCATGCTCTTCGTGAGATAGGAGACGATCCCGAGCTTGACGAGTTCATGGTATTCTTCTTTTTCTATCTTAAAGTAATTTCTTTCGGGAGGGACACGTTTTGCTTGAGTTAAAAGAAAGGATTGATAAACTTGTGCTGGGATGAAGACTTTAATTGTTGCTGCAACGCATGTTAGGAATCGTACTGCGAAATTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCAACGAAGCGACCTTGTTTTTGTGTAGTATCGAATCACAACTCAGCAATCTTTGTAAGGGAACACTTACATTGCCACTGGATAACAACCGCTCAGGTAAACATTTGATTTCGCAACCTTATTCTCATGTTCAATCGACACATCGTGTATAAATGGTGTTGTGTGAAAAGAATAAGGTTATGGACATATTTTCATTTATATAATCATTATTATATTGTATTCGTGTTTTGTTTTTAGGTGAAGACCAACCGATTGCCCTCTTTTGTACGTTGGAGATGGAGTGGGATTTTGTCTTGTTTAATGAATTTAAATTTAAATTATTTACTATGACGCCCACGTCACAACCCTCTTACAAAAGTAGTTGATTTGCGACATTGTTGACGTTTTTTTAAGTTGGTCCCGTGTGGAGTGTGTAAATGACCAAGTAAAAACATGTTCACACTCCAACATGGAACTGCACACTAAAGAAAGGACATAACTAACTTTGGAGTGGAGGTAAGAGATAATGGAAGAAAAGAGAAAATGATAGAGAGAAAAGTGATAAATAGACCATTGATATCCTGTGAAAGAAAGAGACAGTTAAAACAAAAATGTCGTAACAATAGGAAAAAAAATGATTGTATAGACACAATAAAGAATTACTAATAACTGATTCGGCTGGTGAGGATCAATCACATGTCCTTGAAGGTTGTTTTTTAAAATCGTTCTATGGATGAGAAAAACTTTTGATGGGATATCTGTAAACAATCTTTGAGTGTTGATACATGTTTTGGTCTTAGTGAATCTTGGGAACAAATTCACCTAAACCTTTATCAGGAAAGAAAAATGGTGGGGTACATTGATGTCTTCTTAGCTTTTAACATTATTCCATTTTTCTAATGTCATTCTCCCTCTAGTATTTGTTAATAGCCTAGCATGGATTCACTTAAGTCTTGTGGTAGTCAATGTCTCTAGCACATACTCACTAGTTGTTTTAATGCTTTACATCTTGACGTAATACATGGATGCTGTACCTAATATTTGAAATATATATACACACACAAGTATATGTATATGTATGTATTATCTGTTGCTTGGAAATTGCATTGGTGCTGTTGATCAATCATATTTCAACATGTATAAATTAGGTCAATCAATGTCTATTTTTTATAGTATGTCAGGAACATGTCTAAGTATATTATTTTCCTAGTTAACAATTACTGCTCATCTATTTGTTACATCCTACAATTAAATAATTTAGTTATGCAATATCTATCATACGAATTATTTATATTGAGGTGGGTGATAAGAGTTCAATGAATAATTCTAAATTCCTGCACTAAATAATCTTCCAACTTTGTAAATAAAGAAAGTGTAAAATGTTTTTCAAGTTTGAAGCATTAGATATGTATTTACTTTTCCTTTTTAGAACAAAGCACACTATGAATATTTGTAGGATTACATAACATTACTATCTTTAGTTTCCTGTGCATGTCAAAGTTGCATGAATCTTTTCATTAATACTGAAAATTTGCGATATTATGGCTTCTGGAGTCCTTACATATCCAAGTTACGAAAATGGAAAGGTTTCGACTGTTAAGTTTTTGCACGGTGCAATAATATGGGATAGTTACCCGAAAATCTTAGTTGAGGTTTTTCATTTTGTTTGTATATAGAGGAAGTAGTATGTATTTATGAAAGTGACCGTATGCGATTTTCTTTTCGTACGCGAAAGCGAAAGAGTGGTGTTGGATCTTTCTATAAATGAGTGGAGTCAGTCTCGAATTAAACATATCGAAGTGGGGGACCATTTTAATGCAAAAACCATGAAGAGATGAAAAAACAGCAACAAAAATGTTGAGAAAGGCCATGACATTGGCTTGTAATAATTGGGGTGGTTTATATTTTCCTGTACTGACACTAATAATTGTAGCCAAATTTTTACATCATCTTCAAGTTTAATTCATGCTTTGGCTTTTCACCCTCATTCATCTTCCTCTGTACTGCACCTTCCTTGTTTAACCGCCCTCCTTCTCTGTCCATGGCTAGCTGACCATTATGAAAAAAAAACTAGAAATTTCCCATCTTCAAAAAAGTGGTAAAAGAAGTTCTGAATAACAAGTAATATCTGTTTTGTATGTTTCTGCATTTTTTCCAGATGAGGCGGCTGGGACGTCAGAAGATGAATTGAGTTGGGAGAAGATGGAAACAGTGGAAGGTGTGGAGGAATCTTCTGGGTCTCGTCCCGGTGATCAAGAGCTTAAAGAAATACTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTAAGAAAGGAATTTTTGAAGAAAAGGAAAAAGGGTAAACTTCCGAAGGAGGCAAGGAGGATACTCTTGGACTGGTGGAGCACTCACTATAGGTGGCCTTATCCTACGGTAATTCACATTAATATCATCACTGTCTTTCTGTTGTGTATTTCATTCACATAATTTCACCCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACATATATCTGAAGTTAGCCCCTTGAAAAATCAGCAATGATTTGAAAATACCGATAGTACTGTCTTGTAACTTGTAGTGATAGTGGTTTTCATTTCAAGGTAGTGAGGATTCACTCCTCTGCCATATTTTGTACGTGTTGAGACTTGAAAATGTGTGCGATATTTCTAGTTGTGGTATGAGGTAGCTTGATTTGTTGGTTGCAAAAAATAGGCACAAAATGGTGAGCATTTGATTGAACCATGAACACTTGTGTTGTGGACACTGTCAAGAATATGTTTACTTTTCCATGTGAATAGAATAAAGATTGGGAAATTTGATATGAATGGGTTGAAACAAATTGTTTGTTAGGAGGAGGAGAAAGTGCAACTATCAGAAATGACAGGACTTGATCAAAAGCAGATAAACAATTGGTTCATCAACCAAAGGAAACGGCATTGGAAACCATCTGAAGACATGCGATTTGCGATTATGGATGGTGTAAGTGGCAGCGCCATAGGTAGAGGACATATGTAGTTTATTTCTGCACTGGAAATGAACCACCAAGTTGATTTTTGCTACTTCTACCTCGTACTCCAGTGATGATGTGTGCATACGCTGTTGATTTTTGTTACTTCTACCTCGTACTCATACCTTGTATTCCTCTAGAAATGTTAAATTTTTTGAACCTGCTTTTGAATGCTGCAAAGTGTGTATATGTGCAAGAGTGTAACAACAGTAGCTAATATATATAGCCGACAATAACGATAATCGATCAAACGTTACTGAATCATTATTTTATTACAATATATATGTTATACATTTATGTCTTGCAT