Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29940 LG8 32214131 32214607 PREDICTED: agamous-like MADS-box protein AGL80 isoform X3
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Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein dimerization activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
C/G 32214175 synonymous_variant p.Thr15Thr
A/T 32214199 missense_variant p.Lys23Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29940.1
MTRQKVKLAYISDVTARKSTYKKRKKGIIKKVRELTILCGIPACAIISCPFEAKPEIWPDPEGAKQVIQRYLDASVIDESKNVNQESFLIQRIAKAQEQLKKLRQENQEKEKILSLFSYMQGEDLPTDVQELKQLKKLIENTLKETKIKMDDLNCESM*


CDS Sequence:
>Vu_29940.1
ATGACTAGGCAGAAAGTGAAACTTGCGTATATCAGTGATGTGACCGCAAGGAAATCGACGTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGGGAACTGACGATTCTGTGTGGGATCCCAGCCTGCGCAATAATTTCATGTCCTTTTGAAGCTAAGCCAGAGATTTGGCCAGATCCTGAGGGAGCAAAGCAAGTGATTCAGAGGTATCTGGATGCATCTGTTATTGATGAAAGCAAGAATGTGAACCAAGAGAGTTTCCTCATTCAGAGGATTGCCAAAGCCCAGGAACAGTTGAAGAAGCTGCGTCAGGAGAATCAAGAGAAGGAGAAGATCTTGTCCTTGTTCAGCTACATGCAAGGTGAAGACCTCCCGACTGATGTTCAAGAACTCAAACAACTCAAAAAGCTCATTGAGAATACTCTGAAGGAAACTAAAATCAAGATGGACGACCTCAATTGTGAGTCTATGTAG


Promoter Sequence:
>Vu_29940::LG8:32212131-32214131(+)
AATACCTACTACCAGTCATGGGTTGGTATCTTTACCATACACAAATCTAAATGAACAATCTTCACTACATTTCTTATTCTCCAAGACTTTCTAGTTTGAAAAGATTTTTTGTGTTTTTTTTCCAATTTCCTACGTCTCACAAACACTTTTTGAAACATTTATAATAGATAAGTAAAAAATTTAATCAAAAAAGTGATAATGTACAAAGCGTATATGCCATAACCAATCATCATTTAGTATGAAAAAACTTAAACATGACATTTCTTTATGCCAAACTTTCAAAGAAAATAGACAATTATGAGTCTTTTTCTAATAGTTGCCTATTACTTAACAAGTTTTGATGAAGACTAGGAGTATAGAAAACAACAAAAAGATGAAATTATGAGAATCATATTTTAATATAAGAGCAAACGAAGATGAAGGAAGTTTTGAAATGAATAAGTATACTTATTTTAAACGAAGATAAACAAAAAATGAAAAAAGGTTTTAAACATGAACGAAAGAATAAATTTGAAATTAAACGCTGTTCCAAGAAGAAAGTTGAAGTTAAAATTGAATAAGAGAGAAAACGTTGTTGCTTCTGAAAGAGAAAGTGACTGTGTAAGAATCTCAGTAAATATATCATGTTTTATAGTAAATACGTTTACTAAAAAGTAATAATTGCTTACTTAATTAATTTAATATTTTTTATATGTATTTAGGAGGGACATATTTGATATCAGAGTAACATTTGGAGGTGCAGAAAAAAAAATGAAAGTACAAAAAGAAAATCCTTATTTGTCAAAGCATCATATAGTTGGGCCACACAAGACCCAATCTAGCATTGGCCCATTGAAAATACCAAATCAAAATAGTTTTGAGTGGCGTGGTGAATTCTACTACTGGTTTTGTTAGTTTACTTTCCATTTCTCATAACATAATATTAGTCTCTTATTTATCAATCATATTTTACAAACAATATTTTTAAAACTAGATTCATCACTCAAACAGTTAATGCATTAATTCAAGATTTCATCATAATTGAACCAGTATTAATAAAGTAATAATAATAATAATAATTTAAAAAATGCATAGAATAACATTGTAACTATATAATATACTGAAACTAAAAATAATACATAGTTTTATACATTCTCAACATTAATACATATACAAAAGTCAAAATATTAACTATATATATATACTTGAATAAAAAAATTAAATATTTAAATATTTAAAAAGCCAAAATGATGTATTAAGCATATTTTACTGACTACTGCAATTAGTTTTTTTTATTGATTTTAACCAAAATTTCAATTCTTCGATCGTTTTTAAGACTAGTTTTTGTGATTAATCTCTCTTGTTCAGTTCTGACACGGATAATGTCGTCATGTTTATCTTTTCGATCTTGAAATAGTACCCAATATAAATATATTTGGAATTATTAATTATTATCTTATGCTAGAACCATTTTTAGTTATTAAATATTTAAAAAATGGGAAATGTTTACTTTTGGTAAAGTTTAATATTAGAATTTTAACTTTAAGAAAAGATTTGAAAAAAAAAGCGAATTTGGTGAAAATTGAATTATTGTATCGGACAAGGAAAGTGAAATGCGAATAAATCTATCTAAAGGAACTCGATAGAGGCAGTGGGATCCACATTTCTTTTTTTAATTTTCTTACTCTTTCCTCTCTCTTGCAAACGAACCGATGGAACGATGGAAGACTGGTAAACTTTCTTGCTGTTTCTGCGAAAGCACAAGGGTTAGTAAAAGATCCATATCTTGAATATTCTCTAAATATGGCAATGCATTAAGGTGTAGCTATTTATGGCGCATATTTTTTAATTATTTTCCAATTCAATGCGCAAATGCAATCGGTGTAAAATGTCAATGATTTCAGGAATTTAAACTGGAAAAGATGAGATGGGGCTTTATAAAGAGCATAAGGTTTAGAGAGAAGATATTACATGAAATGAGATTGTGAATTGTTACTAGGTTTTTTTGGCAATTGTAGGCA


Gene Sequence:
>Vu_29940(+)
ATGACTAGGCAGAAAGTGAAACTTGCGTATATCAGTGATGTGACCGCAAGGAAATCGACGTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGGGAACTGACGATTCTGTGTGGGATCCCAGCCTGCGCAATAATTTCATGTCCTTTTGAAGCTAAGCCAGAGATTTGGCCAGATCCTGAGGGAGCAAAGCAAGTGATTCAGAGGTATCTGGATGCATCTGTTATTGATGAAAGCAAGAATGTGAACCAAGAGAGTTTCCTCATTCAGAGGATTGCCAAAGCCCAGGAACAGTTGAAGAAGCTGCGTCAGGAGAATCAAGAGAAGGAGAAGATCTTGTCCTTGTTCAGCTACATGCAAGGTGAAGACCTCCCGACTGATGTTCAAGAACTCAAACAACTCAAAAAGCTCATTGAGAATACTCTGAAGGAAACTAAAATCAAGATGGACGACCTCAATTGTGAGTCTATGTAG