Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29872 LG8 31370676 31371994 PREDICTED: transcription factor MYB108-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, response to abscisic acid, regulation of transcription, DNA-templated, response to abscisic acid, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/G 31370742 3_prime_UTR_variant
C/T 31371011 synonymous_variant p.Gln232Gln
C/G 31371408 splice_region_variant&intron_variant
A/T 31371420 intron_variant
C/T 31371489 intron_variant
T/A 31371660 intron_variant
C/T 31371661 intron_variant
A/T 31371928 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29872.1
MDTNCGPLLNTQPKMQHGENEMLGLRKGPWTVDEDTILVNYITTHGEGHWNSVARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLRCDVNSKEFRDTLRYVWMPRLLERLQPTSEILQPQMKLDPGPTEIQGFHGLDSVTEWSKGSHPAGSYSDSSSVELQVHSNSDHSDCSGSGLDPWGSLNMQMWEEGNGGGESLESLWNELEIKYSSLP*


CDS Sequence:
>Vu_29872.1
ATGGATACTAACTGTGGGCCCCTATTAAATACACAACCCAAGATGCAGCATGGTGAAAACGAGATGTTAGGCCTCAGAAAAGGTCCATGGACGGTTGACGAGGACACCATTCTGGTCAATTACATCACCACCCATGGTGAAGGTCACTGGAATTCCGTCGCACGATGTGCAGGTTTAAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTGAACTACTTGCGCCCCGATGTGCGGCGTGGAAACATCACACTCCAAGAACAAATACTAATTCTCGACCTTCACTCTCGCTGGGGCAACAGGTGGTCGAAGATTGCACAGCACCTGCCAGGAAGAACGGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGATAAAACAGGCGAAGCAACTCAGGTGCGATGTCAACAGCAAAGAGTTCAGAGACACCTTGCGTTATGTGTGGATGCCGCGCTTACTGGAACGGCTTCAGCCCACATCGGAAATTCTCCAGCCTCAGATGAAACTGGACCCAGGCCCAACTGAAATTCAGGGCTTTCACGGTTTGGATTCGGTGACGGAGTGGAGTAAAGGGAGCCACCCCGCCGGTTCTTATTCGGACTCATCATCCGTGGAGCTCCAAGTTCATTCGAATTCAGACCACAGCGATTGTTCGGGTTCGGGTCTGGATCCGTGGGGGAGTTTGAATATGCAGATGTGGGAAGAAGGGAATGGTGGGGGTGAATCGTTGGAAAGTTTGTGGAATGAGCTCGAAATAAAATACAGTTCCCTTCCGTGA


Promoter Sequence:
>Vu_29872::LG8:31371994-31373994(-)
TTTGAAAATTTTAAGTACCCAATTATCGATAAAAATTGAATATAAACTAAATTAAAAATATCCAAATTTATAAGAGGTTTAAAATTTAATTAAGTCTTATTAGAGCATAAAATGTGTACTTGCCTAAGAAAATAATTTAATATACTACTTACTCGTTGTTTGCCAAATTGGATTAGAAGTTGATCTAATAAAATAAATATCAAAGTTCTCTACTAAAGCGTTTCCATAAATTTTCGTGGTGTAAGCATGGTTAACAACTTTTGACAGAATATTCAAATCATATTTGATTAAAAAGCAGTAGTTATATTATAGTTGTGTGTTAGAATTCAGTTTCGATAGTGATAAAAAGTAATCCCTATGCCATATACACTCTCTTTTGTTTAATAATTTTAAAAAACACGTTTTAAATAATGTTAATAAATTAAATTATATTTTTATCTTTTATTTCATTTTTAAAAATCATTTTATTTTTATATCTCTTAAAACATAGCATGTATTTTTAATCTTATTGCTTCAGATCAATATGATTCTTATAAAATAATGTTTTTTGTATTTTGGAACATTAAACCAATTATTAACCGGTTCAAGATACGAGCATGTTATATTTGCTCCACACGCATACAAATTAATAAATATAAGATATTTAAACAAAAAAATAGTTATAAAATGGAAAACAAGTTAAAGAACAGTAAACAAGAATAAGTATAAGGTATGAGTTGAGTTAAAAAAAATATCAATTTAGTCTGATTTATTTTCTGTGAGAAAAAAATTTATAATTTGATCTAATCCAAATTAAAAGGTTAAGGAATTGAGTCACTTACTTATTTTTGTAATTTATTTTATGTATTTATTGTAATACAATAAAAATAAATGGACTGATTCATTTCTCATCTAATTATCTAAATATTATTATAAAAATAATAATTAAAAATCAAAGTATTAATATATATATATAACTTGACAAACAATAAATTAAACACACAGACTATTTAAATTTATTTGAAAAACATTATAATATTTAGAAAAATCAAATCAAAAGTCTAAATAATTAGAAGTGATAATTATAATAAAAAACTTATAAAAAAATAATAAATAGAAAACTAATAAAGTTTGATTGGTGATGAGTGACAAGTGAATTCATTTTCAATGGTTTAATCCTTAAATTAAGTGAATTGGATTTAATATAATCCACTTAAATTTCATCTATAAATCAAGTTGGCTAATAAATTATAATTCATTGTAACAACATCTCTAAATAATATTAGACATATTTATTAAGGTATTTATAATTTAAATATTAATCGAGCTCTATAATCTTTATGTAAATAAATCAAACAACAAACATATTCAGGCTTCCAAATAACAAAAAAAATCATATTTCACAATTGCTCTTTGACTGGATCAAACTTATTTAAATTTAAAATATTAATGATCGAAATACTTAAAAAAAAAAGAGTAAAACATAAAAAATAAGATAACGCACAAGAGAATGAAACTATGTTTTTAGTATAACAAACATATTAAAGTAATTTCTTTTGTGTTTTTTAAACAATAGTTTAAAACACTAATTAACATAATTTTTTTTTTGTTTAATAAAAAGAGGAATATTTGCTTGTTTGAAGAAGAAAAAGAAAAGGGAGTTTGGTGTATTATTACTTTTAGGAAATGAAAGTGTGAAATGTTTACCAGATTCGGGATCCGCCACAACTGGCTGTGTTTTCAATAGTAATCTTTCTTTGCGCGTGTCACAGGGATAAGCAAGAAAAGAGAGTCAACCAGTCAAACTCCAAACACCATGTCAGTCTTCAAAGTAGTACTATTAAATTTATTCTACAAACAATTATGATATAAGAGAGAAAAAAGAAAAGAAGAAGAAATGCAGTGCATTCTCCGTGTGGTCCGCGTCCCTTTTGTTTTTCTTTTTTCGTGGAGTGAAACGTTGGAGTGTCCTTGTTCTTATCCCACTCTTTTATATATAATAACTTCCAACACATGAAACC


Gene Sequence:
>Vu_29872(-)
ATCATCCATTCACATAATATTCTTATTCTCACCTTTCTTAAAATTAAACACTCATACATCCTAAGGTATATCAAATAGCTAGCCAGTATTAGAGTTATGGATACTAACTGTGGGCCCCTATTAAATACACAACCCAAGATGCAGCATGGTGAAAACGAGATGTTAGGCCTCAGAAAAGGTCCATGGACGGTTGACGAGGACACCATTCTGGTCAATTACATCACCACCCATGGTGAAGGTCACTGGAATTCCGTCGCACGATGTGCAGGTTGCTACGCTTTCTTCTAAATTACCCTTATATATATTTTCTCATATTTTCATCACCATTTACCAGATTTTTTTAAAAATTGATTTAAATATTCAGGTTTAAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTGAACTACTTGCGCCCCGATGTGCGGCGTGGAAACATCACACTCCAAGAACAAATACTAATTCTCGACCTTCACTCTCGCTGGGGCAACAGGTATAAAATTCGATCTACGGTTTTTCTGTTATGTTTTTCTGTTATGTGGTTGGGCGTGGGCACGTGTAATATATGGTGTATAATGTTTTTTCGTAGGTGGTCGAAGATTGCACAGCACCTGCCAGGAAGAACGGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGATAAAACAGGCGAAGCAACTCAGGTGCGATGTCAACAGCAAAGAGTTCAGAGACACCTTGCGTTATGTGTGGATGCCGCGCTTACTGGAACGGCTTCAGCCCACATCGGAAATTCTCCAGCCTCAGATGAAACTGGACCCAGGCCCAACTGAAATTCAGGGCTTTCACGGTTTGGATTCGGTGACGGAGTGGAGTAAAGGGAGCCACCCCGCCGGTTCTTATTCGGACTCATCATCCGTGGAGCTCCAAGTTCATTCGAATTCAGACCACAGCGATTGTTCGGGTTCGGGTCTGGATCCGTGGGGGAGTTTGAATATGCAGATGTGGGAAGAAGGGAATGGTGGGGGTGAATCGTTGGAAAGTTTGTGGAATGAGCTCGAAATAAAATACAGTTCCCTTCCGTGACGCATTGTGCAAGGCACAGACAGTGTCAAAAGTTGAGCATGCGCTTCTTTGTATTGTTTTCCTCACTTTGTGTGTACAGATTAGATATTAAACTTAGCCACGTGCCTTATAAAAGTTTACAGCATTTCAAATATTGATTTTTCTTTATGTTTATGTTTGTGTAGCCACAAGATTGAAGGGTTTTGCTACAATTGCGTTTCGTAGCACCCAACTCATTTATCATGCACCGAATTGAGCTATTTTTTTTATAT