Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_29845	LG8	31052100	31052549	PREDICTED: bZIP transcription factor 53-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/A	31052215	missense_variant	p.Arg39Gln
C/T	31052220	missense_variant	p.Arg41Trp
G/A	31052234	synonymous_variant	p.Gln45Gln
C/T	31052235	synonymous_variant	p.Leu46Leu
A/G	31052252	synonymous_variant	p.Glu51Glu
C/T	31052262	stop_gained	p.Arg55*
G/A	31052280	missense_variant	p.Val61Ile
C/G	31052286	missense_variant	p.Leu63Val
C/T	31052290	missense_variant	p.Ala64Val
A/T	31052399	synonymous_variant	p.Ser100Ser
T/C	31052544	missense_variant	p.Ser149Pro
A/G	31052548	splice_region_variant&stop_retained_variant	p.Ter150Ter

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_29845.1

MASIQRPASSGSSEGGDPAVDERKRKRMESNRESARRSRMRKQKQLENLTEEASRLQNENVHLAQSIKAKEEAYVEMEAANDILKARTMELADRLRFLNSILEIAEDVGDLSVEIPQIPDLLFNPWQIPHPMMASPDMFLHGTEGLFAS*

CDS Sequence:
>Vu_29845.1

ATGGCTTCGATTCAACGTCCTGCGAGTTCAGGATCGTCGGAGGGAGGAGATCCGGCCGTAGACGAGAGGAAGAGGAAGCGGATGGAGTCGAACCGCGAATCGGCGAGGAGATCGCGGATGCGGAAGCAGAAGCAGCTGGAAAACCTAACCGAAGAAGCGAGCCGATTGCAAAACGAGAACGTACATCTGGCGCAGAGCATAAAGGCGAAGGAGGAAGCGTACGTTGAGATGGAAGCCGCCAACGACATCCTCAAAGCTCGGACAATGGAGCTCGCCGATCGTTTGCGGTTTCTGAATTCAATTCTCGAGATCGCCGAAGACGTCGGCGACCTCTCCGTCGAGATCCCGCAGATTCCGGACCTTCTCTTCAATCCTTGGCAGATCCCCCACCCTATGATGGCGTCCCCGGACATGTTCCTCCATGGAACTGAAGGACTGTTTGCTTCATAA

Promoter Sequence:
>Vu_29845::LG8:31050100-31052100(+)

TTGAATTGAAAATTTGATACTTTCCTCTTCGTGCTTTGAGTTAAATTTTTTTTACATATTATGTACTTGTTGGAAATTACTTAAGTACTCATATTTCAATTATTTCATTCACACACAAAATCAAATTACAATAAATCACAACCACTCAAGTATATAGTTATTATTCAATTCACACGATATCATATCAATTTTACATATTAAACTAGATTTAAAAATTAAAACTAATTTTATCCCTAATTTATTCTACAAGATATACAAATCACAACTAATAATTACAACATAAAATAACGTATAAATATTATAAATTTAGTTTTTCCCACTTGACTAAACTCTTCATATTGTTATCAACATCTCCAAATTTAAATATGCACTATTGTTTATGTGTTATTATTTCTCCAAATTCATAACTAAAAATAAATAAATTTCAGTTATTTTCTTTCAATATAAATTTGTTATTTCTTAACTATTTTTGTACTGAATATAAATTTGTTATTTATTGATTTTTTAAATATTAAAAACAAGTTAAAAGTAAAACAAAATAATGTGATTTGGAAGAAATTTTTTTCAACTAATATTGGTTAGAAAATAAGTTTGAAAGCAAAACAAAACAGAGGGATTTGGAAGAAAAGTTTTCCGATAACCACGTAACTACGAGAATAATGCATGAAATTTACATCCATGTAAAAATAATTTAAAAAACGATAATAACTTATAAAAAATATGCCGAATGGATTATGAACTTTTAAATACACAAGATAAAATATGATAATATTATTAAAAGTATACTTGGTTGTTTTTCTGTACAAATTTTCAAACTTAAATGTTTTTAATAAAATAAAATAAATTTATATTAAATTTTAAAATATAATTTTAAAAAGCCTGCGACGATCATTAATAATGTTAGATTAAATATATAAAATGCTTTTAATTTAAGCTTAAAAAAGCATGCTACAATAATTTACAAATGGAGTATTTTAATTTAAGTTTACTATACTTTCTTAGTTTACAAAATATTTAAATACTTTGTATTTTTCAATTTAATTTTTTTAATATTCCATTATTTTACATATATTAGGGATTGTAAATTTTTGTAATTAATATATACTTATATCGTGATTTATGTAAGACGATAATGTTGGACAAAATAATGAAATAAATATTAATCATACAGTATAATTAACAAAAAATAAAATATATACTCAATTAAAAGTATAATTTTCAATATAACAATTTTTTAATAAAAGTTCGATTAAAAATAATGATATTTATAAAAAATAGTCATGCCTAATATTTTAATATAAAATCATTTATGAAAAAAAAGTAAGTAGATAGGAAAATTGTTTTATTTTCTGGCCAAAGGTTAGGATTGAAAATGTTTTTATAATTTAACTGAAAATACAGCTTATATTTGAATGAAATGTGCGTTTCCTAGTTCTAGTCATGTTTTTGAATTACTCCGGAAGAAAAATAGCTGTTTCTTTCTCAGTCGTCACGTTGGCGCCAGCTGTGACGCGTTGTCATTAAGCTCTTAAAGGATCAAAATTTTCAATTAATTATTCCTACCCTAGTGCACCCTAGCACGTTTTCCACCCCAACCTAACCCCACATTTTTTCTATAAAACCTAACTCTTACACCTATTGAAACCTTCTTCGGATAAACCTTTTCACCTTCCCCAGATTCTTCTACCTAACCCAAATCCCCCTTTTGTGTCTTCATAATCCATATCCTATCTTCGATCAAGCTACTCTGTTTCTACCTTGTTCGAAATCAAATGTTTACGGAATTTCTATGACCCTGGCGAACCCCATGCGTCGAATCCGTCTCCTCCACTCCTTCTCCGTCGTCTTCCTCTACTGGTTCTACGTCTTCTCATGAACTCCCTCTCAATCTCCTAGCTTCTTCATTGCAGCCACTATTTTTTCGAATTTCTGACAATTAATTAGATCTACAAAACGCTAATTTCCCTAACCTTGGCAAAAACCACCAATTTCGAATTCAA

Gene Sequence:

>Vu_29845(+)