Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29801 LG8 30554084 30555561 PREDICTED: transcription factor RAX2
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/T 30554084 initiator_codon_variant p.Met1?
G/T 30554219 missense_variant&splice_region_variant p.Val46Phe
G/A 30554236 upstream_gene_variant
A/T 30554286 upstream_gene_variant
G/T 30554324 upstream_gene_variant
G/T 30554418 upstream_gene_variant
C/T 30554519 upstream_gene_variant
T/C 30554616 missense_variant p.Trp68Arg
T/A 30554695 upstream_gene_variant
C/T 30555117 missense_variant p.Pro163Leu
G/T 30555222 missense_variant p.Cys198Phe
A/T 30555227 stop_gained p.Lys200*
A/T 30555232 missense_variant p.Gln201His
G/A 30555257 missense_variant p.Ala210Thr
C/T 30555267 missense_variant p.Thr213Ile
T/A 30555389 missense_variant p.Cys254Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29801.1
MGRAPCCDKANVKKGPWSPEDDEKLRDFIEKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICTLFGSIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGIMNPSALKKPHQVTLSSMLQNSTPSSSSSSSSLSLKSNHSSNHQPHGPFTSPDTISYESLLSGNSCSTFESLYQVNCGFMLETSCSSSSDGSCNNNNQMNHVKGAEVGDVGVGGFGDQIGGLSYLSSGVEDTQKLVSSNGGRTSGWTGEESRLWGESPLEYGLEEIKELMSTSSCNNFMFDDSKTGEMVMYY*


CDS Sequence:
>Vu_29801.1
ATGGGAAGAGCTCCTTGTTGTGACAAGGCCAATGTGAAGAAAGGGCCATGGAGTCCTGAGGATGATGAAAAGCTAAGAGATTTCATAGAGAAACATGGTACAGGTGGAAACTGGATTTCCCTCCCACATAAAGCTGGTTTGAAAAGATGTGGCAAAAGTTGCAGACTGAGATGGCTTAATTATCTGAGGCCAAACCTTAAGCATGGGGAGTTTTCTGAAGATGAAGATAGAATAATCTGCACTCTCTTTGGTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGAATAATGAACCCTTCAGCACTGAAGAAGCCTCACCAAGTTACCCTTTCATCCATGCTTCAAAACTCAACACCCTCTTCATCCTCCTCCTCATCTTCATTATCACTAAAAAGCAATCACAGCTCAAACCATCAACCCCATGGGCCTTTCACAAGCCCTGACACCATTTCATATGAAAGTCTTCTTAGTGGAAACTCTTGTTCTACTTTTGAGAGCCTTTACCAAGTTAATTGTGGGTTTATGCTTGAAACAAGTTGCAGCTCTTCTTCAGATGGAAGCTGCAACAACAATAATCAGATGAATCATGTGAAAGGAGCAGAAGTTGGAGATGTTGGTGTTGGAGGTTTTGGTGACCAAATTGGTGGTCTCAGTTACCTCTCTAGTGGGGTGGAAGATACCCAAAAGTTGGTGTCCTCCAATGGTGGTAGGACTAGTGGATGGACAGGTGAAGAAAGTAGATTATGGGGAGAAAGTCCATTAGAGTATGGTTTAGAAGAAATTAAAGAGCTAATGAGCACAAGTAGTTGCAACAACTTTATGTTTGATGACAGCAAGACAGGGGAAATGGTGATGTACTACTGA


Promoter Sequence:
>Vu_29801::LG8:30552084-30554084(+)
AGGGTTAGATATTTGAACTTACAGACCTAGAAAAGCTCGACCCACGTAACCTGTCAACCCGTCGGAGGTACATGTGGGATGAGGTTGGCTAGCCCGCCAACCTGTATACATATGAGTTTTTTTGTTCACCCACCACACCATGAACCAGTAGAGGTGGAGCTAGATCCAGTAACAAGAACAAGATCTGATTGCAAGAGTGAGTGTTGCTTTGTGGCCTCCTTCTTCGTGTCTTACTCTTCTCCTAGCTCCAAGGGTCTCTCCTCCATATAGTTTCTTCCTCTAGCAAAGCACCTTCGATCTTGCTACCTGTAAATAAGAATGTCGTCGGCTTGAGATGTCATCGAAGCCACCTAAAGTCGTTGATGTTAACCATTGTTCCTCCCTATAGGAGGGTTTCACGTTGGAGCCACCATAATCCCACCTGGATCTTGTCAAATGAGTGAACACCACCATGACATTTGTCATTGAAGCCACCTCCATTCATTGCCATGGTCGTTGCAACCAAAACATGTCGTCCTTATCGTTCCACTTGTCTTTTTTTTTTTGCTTTATACATGTTGTTTTGTTATAATATGGGTATGATGTTCTGTTATGCTATAGGTATGATGTTTTGTTTCGTTTCTTTGGATCAAGCAATGCCAGACTTCTAAAAGAAAAATTAAGAAATTGGCAAGCTAGTCTGTTAGCACACCTAATTATGGAATGAATTATCATTTTCAGCCTATTTTATATAGTTCGATTAGCCTGACACAATCCATTTTTAATGGGTCAGCAAAAAGTTAGGCCATAACAGACCAAGCTAACCCATTTTGTTGTTTTATAAATGAGCAAGTCAACATAACTCACCATGAGTTTAACTTGGTGAGTTGTGTTCTCAATAGGTTATGTTTGATTTAAACCCATATCAAAATTATACATTTACAAAAAAGTATGTACATATAAAAAAATTTGGTTAAAAACCCTTTTAAAGTTATGTATCTGATTAAAAATTTATATTTTTATTTTAATATAAATAGCTCTCCAAAAATTGGTGGAAATAGATGAGTTTCCTAACTATGTATTTGTCTTTTCTGCTACTTTTTAAAATCGAATATTTGATTTTAATCTTTTAGACGTTGGAATAAAATTTAAAATACCTCTTATGTTGACTTTAAAACTTATCTACTATATTTATTTTGTGCATTAAAATCACAATGTACATATTAAATATTAAACATTAATTGTCAATTATGTCAACGATTGAGATGCAAAGTGAAGAAAATCTCTTAAAAGCTCATTTTTGTAAAAAGAAAAAAAGCAAACTCAAATATAATATCCATTCATCTAGAAGAATAAAATGCATATTTTAAAATCAGAAGAGAAGTAAATATAATTTAAGTATATTTTAAGAGAGAAGAATTGTAATTTACTCTTACTTTTATCATTAAGTTTGTTTGGACTTAATCATTTATTTAATTAAGTTTATAAAAAAACATGACTTATTTATAACTCTTGTAAGATTTATTTTTTTTATTAATTGAAGAAATCATACCATAAACTTTATCAAACCGAGGCTTGATCAAAAGCATGGTTATATACTTTGAGTTGGAAGCACCATGAGTCTGAGATGATGAGAAGAAAAAGCTTATAATTGGACTTCCAAGTTTACATTTGTTTTGGAAGGCTTGGCCCATCTCTTGAAAATACGCAGCAGACCATCAATATATAATTGATTTCTATGAATTATTCTATACACAACTCGGGGGGCAGACTTTCTACTTTATATACAAATTGTGATAGCAGTGACCAATTTAAACTTTGCAAGAGGGTCCAATATATAGTGATGGAAACTTCTGTCACTCAATTATAAACGAGTTTAGAAGTTTGATAGTGGTGAGAGTTTGATCAATCGACCCTGTTCCTCCGTTGACTCAAGCTGTATAAATTTCTTCTCTGAACAAAATTGTGTCCAATCCACCCTCCTAAGTGTGAGTGTGTGAGGAGAGAAAGAGAGAGAGAGA


Gene Sequence:
>Vu_29801(+)
ATGGGAAGAGCTCCTTGTTGTGACAAGGCCAATGTGAAGAAAGGGCCATGGAGTCCTGAGGATGATGAAAAGCTAAGAGATTTCATAGAGAAACATGGTACAGGTGGAAACTGGATTTCCCTCCCACATAAAGCTGGTAAGATTTTCTTTCAGCCCTTTGCCCCCTTATTCTCAAGTTTATTTTTTAGTTTGAAAACTATGAAGTTTGGAGAGATTAGGCCTAAGGTTTCGAAATGGTCTGGTATTCCGACAAAACATTAAGGTTTTTGGAGTGTCTGTTGCTCACATTTGTCCATAATTTTCAGTAATATCAAAGAACACATTGAAATCCCATGTGTGATCACAGTTTAAACCTTTGATTGGAGTAATTAATTATAATATATGTTGACATACAGGGTTGTTGCAAGTTCAATTTTTTCTTCTAACTTGTGTTCCCGATGGTGTATGATGATTTGTCTCAAACAGGTTTGAAAAGATGTGGCAAAAGTTGCAGACTGAGATGGCTTAATTATCTGAGGCCAAACCTTAAGCATGGGGAGTTTTCTGAAGATGAAGATAGAATAATCTGCACTCTCTTTGGTAGCATTGGAAGCAGGTAGGTATTCTTTTTCTTTCACTTAATATCAAGTGTTTTTCTTACCAACCTTGGATATACTTCATAGACTAAATGATGAAAGATCATGTATCAGAGTTTGGTTTCACATCTTGGGACTTAAATTGTCAAAGTAGACATGATATTGAATTGATTGCTTGTACTTTTAGATCTGCTACATGTTTCTTTTTTGGGGACTCATTGTGAGAAGTGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGAATAATGAACCCTTCAGCACTGAAGAAGCCTCACCAAGTTACCCTTTCATCCATGCTTCAAAACTCAACACCCTCTTCATCCTCCTCCTCATCTTCATTATCACTAAAAAGCAATCACAGCTCAAACCATCAACCCCATGGGCCTTTCACAAGCCCTGACACCATTTCATATGAAAGTCTTCTTAGTGGAAACTCTTGTTCTACTTTTGAGAGCCTTTACCAAGTTAATTGTGGGTTTATGCTTGAAACAAGTTGCAGCTCTTCTTCAGATGGAAGCTGCAACAACAATAATCAGATGAATCATGTGAAAGGAGCAGAAGTTGGAGATGTTGGTGTTGGAGGTTTTGGTGACCAAATTGGTGGTCTCAGTTACCTCTCTAGTGGGGTGGAAGATACCCAAAAGTTGGTGTCCTCCAATGGTGGTAGGACTAGTGGATGGACAGGTGAAGAAAGTAGATTATGGGGAGAAAGTCCATTAGAGTATGGTTTAGAAGAAATTAAAGAGCTAATGAGCACAAGTAGTTGCAACAACTTTATGTTTGATGACAGCAAGACAGGGGAAATGGTGATGTACTACTGA