Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_29782	LG8	30437212	30437850	hypothetical protein	Map

Annotations

category		relationship type		keyword
Pathway		B 09132 Signal transduction		C 04016 MAPK signaling pathway - plant [PATH:ko04016]

SNP	Position	Effect	Amino acid change
A/G	30437218	synonymous_variant	p.Phe211Phe
C/T	30437248	missense_variant	p.Met201Ile
T/C	30437353	synonymous_variant	p.Ser166Ser
A/G	30437357	missense_variant	p.Leu165Ser
C/A,*	30437434	missense_variant	p.Glu139Asp
G/A	30437779	synonymous_variant	p.Phe24Phe
A/C	30437783	missense_variant	p.Leu23Trp
T/A	30437789	missense_variant	p.Glu21Val
G/A	30437792	missense_variant	p.Ser20Leu
A/C	30437793	missense_variant	p.Ser20Ala
T/A	30437850	initiator_codon_variant	p.Met1?

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_29782.1

MTSPFFQNPSSDWDMLQEPSEILFESLSSNNAVLDPIQDSLSFDMVDFSTAPAQGNHNQLVVKQVQNKEKSYIGVRKRPWGKFAAEIRDTTRNGSRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKTVKESLQEIQYSFSNGSSPALALKERNFIQRKLLSRARKCKGKETSEAATPSVVVLEDLGVDYLEQLLSMSDQSASPSNFN*

CDS Sequence:
>Vu_29782.1

ATGACTTCCCCTTTCTTCCAGAACCCATCATCAGATTGGGATATGTTGCAGGAGCCTTCAGAAATTTTGTTCGAATCATTATCAAGCAATAATGCCGTTCTTGACCCTATTCAAGATTCTCTTTCCTTCGATATGGTTGATTTCTCTACGGCACCAGCACAAGGAAATCACAACCAATTGGTGGTGAAACAAGTGCAGAATAAGGAAAAGTCATACATCGGTGTGAGGAAACGGCCTTGGGGGAAATTTGCAGCAGAGATCAGAGACACAACCAGGAATGGCTCAAGGGTTTGGCTTGGAACCTTTGACAGTGCAGAGGCTGCTGCGTTAGCCTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTGTACTCAATTTTCCAGTAAAAACGGTGAAAGAGTCTTTGCAAGAGATTCAATATAGCTTCAGCAATGGATCTTCTCCCGCACTTGCACTCAAGGAGAGGAACTTCATCCAGAGAAAATTGTTATCAAGGGCCAGAAAATGTAAAGGGAAAGAGACATCAGAAGCAGCAACACCAAGTGTTGTGGTGTTAGAGGACTTGGGAGTTGACTATCTAGAACAACTTCTAAGCATGTCTGATCAAAGTGCAAGCCCTAGCAACTTTAATTAA

Promoter Sequence:
>Vu_29782::LG8:30437850-30439850(-)

TGTGTTTCTTTTTTATGATTTATTGTTGTTATTTTTTTATTGTTGCTCCTCGTATATTTTTGTAAATTAGAAAAAATTATATCCCAAACATTTTCTGAAATTTTGGTTGAGTTGATGTTTTCCATCAATATTCACATTCTTCGTAGTAATAATAATAAAAGCACGCACTCAACATTAGTATATCTTCTCTGTAAGGTTCACTCCCTTCTTTCTTCGGATATATTATTGTACATTTGTGCTTATTTCGTTAAACACAGTTGATATTGTAATTTTGTTTATATATATATTCCATTTTTTTTTACTAAATATTCACCTTTGTTAGTATTTTGCATAACTGCTTTCCACGCGAAATGCCACTGTTCTTAGAGGATCTTAAAATAAAATTACTCTTTATACGTTTCAAACCTTTCTAAAGTTAGTTAAAAAAGCAACAAAAAGAAGGTTTTAATTTTTAACATGTCCTTTAAATAAGCCCTTTGAAAAGGTCTGTGCTAAGTCTAACAACATTTAGTCTGAATTGAAACCGAAGATACCATATGCATAGGATATAATGGTTATTCAATATTTTTTATTTTAAAAGCATATGCATAGGATAATATAATTGAAACCAAAGATACCAAATACACATTATACTTAAAACCATAAAGTTGTAAAAATACACAATTAATCCCTTTATACAGAAGGGAAACAATTCAACAAAAGGAAAGTATACATAGTTCAAATTTGTACGTACAAAAACGGACATGGAATTTTGTCTTTTAGTCTAGTTATTAAAATAATTGAACGTGCGATCTGAGAACACACAGGTTTCGGCACATGGTGGGTCTTTGGATCTAAATTTCGTTTTGGTCAACGTGTTGCCGTATATATAAGCTTGAATAGAAGGCGTACTATTATTTCCAAAATACATTTTAAAAATTTCTTCAACAGCCTACACAAATCATTGTGTTTGTAGTGATGACAGATATTTTTGCATATATTTCTTAATTCAACTGTAAAATTTTCTGGGATTTAATTCACTCTCCTATTGTATCCAACTTTTGTTACTTGTCTGTTTCTATAAGGAGAAATGACTAGGGTTTAGGATTAACCATAAAAATGAAAAAGAATTGGTTGGAGAGAAAGAATTGTTCATAAACTCTGAAGCACATCCATAACAAATATACTGTGCTTAATTTACAGAAAAGAAAACATTTTAAATATGTTACATACTCTTTCAATATGGTCTTTTTCTTAAAAAAATAATAAACATACTTTAATAAATCACATAATAGCTAGTTTGCTTAAGAGTAATTGTTTATGTTACATGTATATTGTGATATTTTGTATGGTAATGAAATTTAAAACCTTTTTTTATACTTTAAAAATCTCGTTGTATAACTTCATTTTCGAACTGAATTTAGTATTGATTAAAATTCATATAATAATAACATCTATGAATGTACCATAAACTTAAGATCAAATGGTCCAAGATGACAGCATTTGAATATCAAGAAAAAATTATTTTATGGGTCGTCATTTATTAAAGAATGACAGTTCTCTTGTCCAGCATTTGCGCAGGTGAAGATTAATCTTTGCAGAAAACCTAGTTGCCCTCCACTAATGTTTTTTCCTTTTTACAGGCTCAAGCATGTTATCTTAAGAATTTGAACCCTATTTGATCATTACTAATTGACCTAAATTTTTTGTGAAAGAAAGAATGCATGAGAGAGTTTCTCATTATCTTAATAAAACCAAAAAAATAGAAGCATATCAAAATTAAAAGCATTAGAAGATGAAGCGACAGAAAGAAGTTGCCTATTATGACTTGCTCTTTCTGTCAGAGCTCATAAACTAATACTATGATCTCTACATTACACAAAGCAAATAAATTAATATATTGCTGATAAAGAATCTATGGTAGGGTTTCAGCCAAGTAAATTACATTAGTAATATAAATTAAGATAGGGGGGAGAGAAAGCAACTGAACAGACAACTTAGTAACCTACAACCCTCAGAAC

Gene Sequence:

>Vu_29782(-)