Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_29649	LG8	28820625	28822664	PREDICTED: RNA polymerase I termination factor-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/T	28821177	stop_gained	p.Lys185*
C/T	28821206	synonymous_variant	p.Ser194Ser
G/A	28821207	missense_variant	p.Glu195Lys
G/A	28821209	synonymous_variant	p.Glu195Glu
T/C	28821215	synonymous_variant	p.Tyr197Tyr
G/T	28821265	missense_variant	p.Arg214Met
G/T	28821269	missense_variant	p.Lys215Asn
T/C	28821374	synonymous_variant	p.Tyr250Tyr
A/G	28821599	synonymous_variant	p.Gln325Gln
T/A	28821913	missense_variant	p.Leu430His
G/A	28822235	synonymous_variant	p.Leu537Leu
T/C	28822661	synonymous_variant	p.Cys679Cys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_29649.1

MIDEEEEIRCNEDKDYSQYKTEGKERKERKKKKLSDEGKSMDYIEFERNEGEDDAQSKKRKKKKLSTERKSKEYEVFEKNEGEGDAEGDKDRKKKKLCGEDKRKEYNEFENNEGEDDALCRKRKKKKLSKESKSKEYNVFERNEGEDDVKNKKKKKKNKLSEEAKSKEYNEFESNEVEDNAQGKKKKLSKESKSEEYNVFKRNGGESYSEGKKRKKKKLSEEGKSKEYNEFQNNDGEDDAQGRKGEKKKYSKQSKSEEDNVFERNEGEVDAKGKKKKKRKHGEDGKSKEYNEFENNEDEDDAQGKKRKKKKMSKENKSKEYNVFQRNEGEDDFEGRKSKKEKMIEDNKSKNENMMTKKETKADNDESPNPARSGLSKPKRVTFSDQVEVCCDGLVRGKRFTLEEDEQIKSAVYNFIESRGLGDEGLDMVLHCSSHPEVRSCWNEIAAALPHRPKNSVYTRAHILFERSEMRKWTPEEYEFLRKVKEQHGSNWRQVADALGKNRIHVKDAWRRVKLRNTNKGRWTQEEYQKLFDLVNLDLRVRASQGYRKSKHGMLRDNIGWEAIGDKLVTRTSVSCCHKWYDKLRSPMVATGAWSDTDDYRLVDALYNLDACCTEEVDWDDLLEHRTGEACRKRWNQIVRYIGDHGGKSFSEQVEILAKRYCPNLLEVREAFDAKPLVC*

CDS Sequence:
>Vu_29649.1

ATGATTGATGAAGAAGAAGAAATCAGATGCAATGAAGATAAAGATTATAGTCAATACAAAACGGAGGGGAAGGAGAGGAAGGAGAGGAAGAAGAAAAAGCTGAGTGATGAAGGCAAAAGTATGGATTATATTGAATTTGAAAGAAATGAAGGTGAAGATGATGCCCAAAGTAAGAAGAGGAAGAAGAAAAAGTTGAGTACAGAAAGAAAAAGTAAGGAGTATGAAGTCTTTGAAAAGAATGAAGGTGAAGGTGATGCCGAAGGTGATAAGGATAGGAAGAAGAAAAAACTGTGTGGAGAAGACAAACGTAAGGAGTATAATGAATTTGAAAACAATGAAGGTGAAGATGATGCCCTGTGTAGGAAGAGAAAGAAGAAAAAATTGAGTAAAGAAAGCAAAAGTAAGGAGTACAACGTCTTTGAAAGGAATGAAGGTGAAGATGATGTAAAAAATAAGAAGAAGAAGAAGAAAAACAAACTGAGTGAAGAAGCCAAAAGTAAGGAGTATAATGAATTTGAAAGCAATGAAGTTGAAGACAATGCCCAAGGTAAGAAGAAAAAATTGAGTAAAGAAAGCAAAAGCGAGGAGTATAATGTCTTTAAAAGGAATGGAGGTGAAAGCTATTCCGAAGGTAAGAAGAGGAAGAAGAAAAAACTGAGTGAAGAAGGCAAAAGTAAGGAGTATAATGAATTTCAAAACAATGACGGCGAAGATGATGCACAAGGTAGGAAGGGGGAGAAGAAAAAATATAGTAAACAAAGCAAAAGCGAGGAGGATAATGTCTTTGAAAGGAATGAAGGTGAAGTTGATGCCAAAGGTAAGAAGAAGAAGAAAAGAAAACATGGTGAAGATGGCAAAAGTAAGGAGTATAATGAGTTTGAAAACAACGAAGATGAAGATGATGCCCAAGGTAAGAAGAGGAAGAAGAAAAAAATGAGTAAAGAAAACAAAAGTAAGGAGTATAATGTATTTCAAAGGAATGAAGGTGAAGATGATTTTGAAGGTAGGAAGAGTAAGAAGGAAAAAATGATTGAAGACAACAAAAGCAAGAATGAAAATATGATGACAAAGAAGGAAACCAAGGCAGATAATGACGAGTCTCCTAATCCTGCACGCAGTGGATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGAGGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACTAGAAGAAGATGAGCAGATTAAATCGGCTGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCCATTGCAGTTCTCATCCGGAAGTTAGATCTTGTTGGAATGAAATTGCAGCAGCCTTACCCCACAGGCCAAAGAATAGTGTGTATACTCGTGCCCATATTTTGTTTGAAAGGAGTGAGATGCGAAAGTGGACACCTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAACAACATGGATCTAATTGGAGACAAGTAGCTGACGCATTGGGAAAAAATCGAATTCATGTAAAGGATGCATGGCGTAGAGTGAAATTAAGAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACCTGGACCTACGTGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCCATTGGTGATAAGTTGGTCACTAGAACCTCCGTGAGCTGTTGCCACAAGTGGTATGATAAATTAAGATCACCCATGGTTGCTACTGGTGCATGGAGTGATACTGATGACTATCGCTTGGTCGATGCTTTATATAACTTGGATGCGTGCTGCACGGAGGAGGTGGATTGGGACGATCTGCTTGAGCACAGGACTGGTGAGGCATGTAGAAAACGATGGAACCAAATTGTCCGATATATTGGAGACCATGGAGGGAAGTCATTTTCTGAGCAGGTTGAGATTCTTGCAAAAAGATATTGCCCCAACTTATTGGAAGTAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA

Promoter Sequence:
>Vu_29649::LG8:28818625-28820625(+)

TATAAGTTATCATTATTCTGAACTTCATTAAAACTTCATTTATGAGTTGAAGTATTATTCTCTCAAGAGTTGAATTATTATGTCATTGTCAAAAAAGACTTCATATTCTAACAAAAGAAAGAGAAAAAATCTATTACCTTATGCATAACTCCTGGCCCTTTTGAAATCTTAAATGACTTTTTAACCAAACTTACACATAGCTGTTTTTTGAAATAGTTTTCAAATATATTTTCATTTGAGTTTATTATCATCAACTCTTGTTGAAATTTGACGGGAATCAATTCAAACACCGACTTCTATGTTTTTGACTAAGTTTCTTGACTTTTGCTAGTTCACATCCCTAAAACATGTGTCTTCATGTGCTTTATTAATATTGTCCATAGTTGGTGTAGTTAAATCCATGACCTTCAAACTTGTAGGTTTTGCTACGCTTGGACTTGGAGTTGTATAGCACCAATGTGCATAGAATCTTTCATTGTCAAAGGTAGCATCTAGGAGGGTGTCGGAGTGGCTACCCGATTCCAACCTCACAAATAACCTGTATTTAAATGTGATATGCATGCCACCATGTTATATATTAACATCTTATTCTAGTTTTTCTTCCATTTACTGTCACAAAAAAGAAGCATGTTATTGCAGCTTACAAAAACTCTTCTTTGATGCCTTCAACCAAGAAAACGGGAGGCGCGTTCTAGTGTCATGAGGGCGACCCTTTTATAACATGACTAAGTAATATACATGCATATTTGTTTAAGAGTATTTCAGGATGTTACAATTATAATAAAAAATACCAAATGAACTATAAAATAAATTTTATTAAAAAAATAAATATAGATATAAATAATATTTATAATTTTATTATAAGTAATTTTTTTATGTGAATAGTTTATTTGTTAAGAATAATTATTTAAATTAAAAAATAGTTATTAAAAAGGTAATAATGAAAACAAATTGTGTATACCTAAAAAATCTTCGTGTTAAATTTTTATTATGATAGTAAAATTTTATTAAACTATAAGTAACTTTCAATTTTAAAAATAAAAATGTTGATGAGTTATAAAATATTTTTATAAAAAATAAGTATTTTTTATTGTGTAAATGGTTTTTTTTATTATAAGCAAATTATTTAAATTTAAAAGAATAGTTATAAAAAGTATAAAATTGAAAATTAATTTATTTTAGTATGAATAATTATTTAAATTAAAAAAAGTAAAAGAATAAATTAGAAAAAAATATTTATTTAAATTTTAAAAAATAGTTATTGAAAGTATAAAATTAAAAAAAAATGTAGATTATACAAGAAATAAATCAACAAATGTGCTGGACCACAAAACCTTATTTATTGGAATCTAAATTTTAAACAGTATTGATAAAAACGTATTTATAAATCGTTAGTATATTTAAAAATGTAGATTCGGAATTTTTTTTCTTTAATGTAAACATTGTTTCTTCCTTCCAAACCATAGTCGCAGTCTCCTCTCGCTCTCGGCTCCCCCAACGGTCATCTCCTTGCCGCCGCGCTCCGCCTGAAAGCACCACGCTCAGGTACGGTTTTCTTCTTTTAACCTGTTTGTAGTTTCCGTTCCAATCATAACCAAATTATCGTTGTCAATCGTTAATATTGTTAGGGTTTCATTGTTTTTTCTCTCTCTTTTAAAACTTCAAATGAGAAGGAAATTACATTCTTTTGAGCTTCTACTCATCTTTTTACTTGAAATAAACGTCTACCTTCTGCTAATCTCTGGTTGACAACTATTTTCCAAGAGAGTTTGTGTTATAATCTGGATGTAGTTGAAAATTTATTTGCGTAAAATATTGAAAAAACAGTTTAGTGGTGCACTGGATGTGAAAAATCGCATTAAATATTTTAATCTGGACAGAGAAGATTGTGGTTCTTCTCTGTCATTATTTTATTTATATGCATTATGTAGTGTTTTTCATACCACCTTTTGGTACTTAAATATCCCATTTATGGTCCAAACGGGTGCTTGATATGCAGA

Gene Sequence:

>Vu_29649(+)