Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_29615	LG8	28357279	28357854	PREDICTED: transcriptional regulator SUPERMAN-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
A/T	28357388	stop_gained	p.Leu156*
G/A	28357645	synonymous_variant	p.Leu70Leu
G/A	28357678	synonymous_variant	p.Ala59Ala
G/A	28357771	synonymous_variant	p.Thr28Thr
A/G	28357778	missense_variant	p.Met26Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_29615.1

MEFSCPEDSKTSSDEIDRSAEQNDDMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANRAKPSTSTKLDDTNTYADLGLYSASNPSYLSRGTYYSTLPDSEVDLNYNYYHHLYFPSHASAAKSPSHVQYSEVFCVENQRDPHLLFGQDWRQKGLTFYTNPLCVHGNKDKIENNTEEDDLDLELRLGHHP*

CDS Sequence:
>Vu_29615.1

ATGGAATTCAGCTGCCCAGAAGATTCCAAAACCTCCAGCGACGAAATCGATCGCTCAGCGGAGCAGAATGATGACATGGGCACCGGCAGATCCTACGAGTGTGTCTTTTGTAAGAGAGGCTTCACCACTGCACAGGCTTTGGGTGGACACATGAACATACACAGAAAAGATAGGGCCAACAGGGCCAAACCTTCCACTTCAACCAAGCTCGATGACACCAATACCTATGCAGATCTCGGGTTATACTCGGCCTCAAATCCCAGCTATCTTTCAAGAGGGACTTACTATTCCACTCTTCCTGATTCAGAGGTAGACCTCAATTACAACTACTACCATCACTTATATTTTCCCTCACACGCTTCTGCTGCCAAATCACCTTCACATGTACAATACAGTGAGGTTTTCTGTGTTGAGAACCAAAGGGATCCTCACCTTCTGTTTGGACAAGATTGGAGACAAAAGGGTTTGACTTTCTACACCAATCCCTTATGTGTACATGGAAATAAAGACAAGATAGAAAACAACACTGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCCTTAA

Promoter Sequence:
>Vu_29615::LG8:28357854-28359854(-)

AAGAGACAAGGACAAGCCATACACATGGCATGTTCTCTTCCATTTTTACACGAATGTTCATTTCTGTTTCATGTTAAAAATTTCCATACAAATACAACAAGCTCTTCTCTTCCTTCTACCACATACAATCTTTTCCATCACAGGATCATATATACTTACCATAGTAAACCAATTAACTGTCATCTCAATGACCAGGGTTTTGCGGTGTCATACCTATCAAATATCTACGTGGAATATCCTTTTAGACTCTCTTAATTTGGCTCCTCAAGCACCAAAAGAAGAAGAAATTTGAGTTTGGACCTGTAAAATTTAATGTCATGCTTCCATTTTCTGCTTTCTGAGGGGTCTTTGAACGTAATCCTTTGGGTACATCTTGGGGCTGTTAGCCTTTCATAGATACATTTTCCATGCACAAGTAACATTTTTAATGTAACTTTTTTTGACCAAATTACATGTACATATGGATTTCATGGAATTAAACTCAATATATGCACTTCTTTTAGTTGGCTTTTGGCTCCTCCTAATTTCTTTTATAATAATTTCAATAAAATACATTAATTTCTCACTTTATTGCCTTTATATTTTTATGTTTCATTAAATTTGAGTTCAAATGAAAAAACTTTATACTTTCAATTAAAACCCTAGTCAATATGCGGTAAAATATATCTAAATAAAAACATTAAGGGGCTAAGAAATATAAGTGACAGGAAAAATGTTATAAGGAGTTAGTAATATAAAAAAACATGAGTATAAATTGAGAAAACGTAAAACTACTTATAAAATCAAATTTATTAATAATAATTTAAAAATGTTCGGAATCATTTTATATAGACAATAAGAACCAATATGTTAATAAATAAAAATAAAAATAAATATAAGTATACGCTAGAACCTATATAAAAATGAAAAAATATATAATATTCAATACAAACGGGGTCAATCATAGTTTTGATTCCATGTTAAAAGAGTGATGAACTTTAAGCCTAATTCAACTTTTGTAAGATGAGATTTGCACTTACTTATATATTATACATTGATCTTATCTCTATTCGACGTGAGACTTCTAACAAATAATAAAAAACAAAATCTAAAATATTGTAAAATAAAAATAAAAATAAAGGGTTAACCTAAAGTAAATTATAACAAATAAAAGCAATTTAGGTGCTAATTATATAATTTAACCCTAATTTTGTATTTAACAGCCATACTCTACTACTGAAATAAGAAAACTTCATATTAGTTATTTAAAGCCAGGTTGTACACACTTCTTTAAAAGGTGATCGATTTATCAAAAGTCTGTCAAAATGTTTATGGTTTGTTATCAAAAGATTTCTGCAACACATTTGGATTATTTGTTTGGTATCCATTTTGTGTATACAACAAACAATAACCTCCACCTGCCTCCAGCTCTTAGGTTAGGCTGTTCTAATGCATATACATCTTATTAATATTTAAATGTGAATTTAAATTTTACATTATAGATAAAATAATATTAAACATCATATATATAATATTAAGATAAAAATAAGAGAGCAAATATCTTGATATTAGACATTATTACAAAGATATAGATGATAAAAGAATTAATCTAATTGGTACTACCCTGACCTTTTAAAGGGAAATACTCATGATTCATCCATTATATACGTGTAGAAAAGAAGAGCAGGGAAGGTTTGAAATGAAAGAGGTGCTTAGGTAGATGAAAGGCACAAGAGTCCAAAAGGGAGACAAATAAATGATTAAAAAAACTAAGCAAGAATTTAAAAAAATATATTGGTATGATATTGAGATGAATCCACAGCCGGCTAACAGAATACATCTCCAAGCAAACTTCTAAGACTTTTCCACTTTACACCACATTCACTTCACTATCTTTAGGTAATGACTATGTCCTTCATTTGTCTCTTTCTCAAACCTTCTCCACCTTCTCTTTTCTATAATACTCTTCCCTCTTACACCGCATTCCTCATATTCACCCCAATAACAATTCATACTCCACC

Gene Sequence:

>Vu_29615(-)