Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29612 LG8 28324644 28325479 PREDICTED: LOB domain-containing protein 16-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 28324812 synonymous_variant p.Ser162Ser
G/C 28325109 intron_variant
C/A 28325443 missense_variant p.Ala13Ser
T/A,C 28325446 missense_variant p.Thr12Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29612.1
MASATTANDTATASSSSSFGSPCGACKFLRRKCAADCIFAPYFCSEQGAARFATIHKVFGASNVSKLLLRIPENDRFEAMLTIAYEAQARIRDPVYGCVSHIFALQQQVASLQAQLVEMKALLDQNQMVYRNMENHWSENVGQAFNPFRPTSMNNPISPQSSLDSIDYSSNINDGMSMQDAQNGDDFSFQACSWKRSHSNDLGELQELALRIMRKCD*


CDS Sequence:
>Vu_29612.1
ATGGCTTCTGCAACAACTGCAAACGACACTGCTACTGCTTCTTCTTCTTCTTCCTTTGGATCTCCCTGTGGGGCATGCAAGTTCCTGCGAAGAAAATGTGCCGCAGACTGCATCTTTGCACCCTACTTTTGCTCCGAACAAGGAGCTGCTAGATTCGCAACCATTCATAAGGTTTTCGGGGCTAGCAACGTTTCCAAGTTGCTCTTGCGTATACCAGAAAACGATCGTTTTGAGGCAATGCTCACAATCGCTTACGAAGCCCAAGCTCGCATCAGAGACCCTGTTTACGGTTGTGTCTCCCATATATTCGCCTTGCAACAACAGGTAGCAAGCTTGCAGGCACAACTAGTGGAAATGAAGGCACTGCTGGATCAGAACCAGATGGTGTACAGAAACATGGAGAATCATTGGTCAGAGAATGTTGGACAAGCATTCAATCCGTTTCGTCCCACTTCCATGAATAACCCTATTTCTCCTCAGAGCTCGCTTGACTCAATTGATTACAGCAGCAATATAAATGATGGAATGAGCATGCAAGATGCACAAAACGGAGATGATTTCTCATTCCAAGCTTGTTCTTGGAAAAGATCACACAGCAATGACTTGGGTGAGCTACAAGAATTGGCACTCAGAATAATGAGAAAGTGTGATTAG


Promoter Sequence:
>Vu_29612::LG8:28325479-28327479(-)
CTAAACTAGTACAGACTTTTATTACTTTTAAAATTACTATTACCTTTAAATTTAAATAAATTAAATATTATTTCATATACGAATTTGATTCATTAAGAATATTATTTCATAATATTCTAATTATGACACAGTTAAAACAGGGACTAGTTCTTGATTTTAGTTAGAAACCTTTTAAAGAATCTAGTTTTCCAGACAGAAAGTCAGAAGAGTGAAATGAGTGCGCCAGTTAAATATCCTATTTGTAAACAAATTTTGGTACTTAAGCTAGCTGAAATAAAACTAAACTCAATAAAGTCATGTTATAATCATGAAAAATACTCAATAAAAAAAGTAGTCAAAAATTAACGTGGTGTGTTAGTTTAAAACAGCTATACTGTTTTGTGCATATACTTCTATGGAATTGGCAATTTTATTGATTTTACACGATTAATGGATATTGTTTAGTCTAACTAAAATAAATCTGTAGATCTTATTAGGTAACTTTGTTTTCATGTTGTTATTTAAATGTTATCTTGAACCGACATAAGACATTAAAAAACATTGAATGACGGAGTAAGTAGGACGTTGTCGGAAGACTTTACCGGCAGGTGGCAGCATCTAGGTGCGGCGTTCGGCGGAAAAATAAACAAAAATTTACAAGGCATGACCAATTCTGAAATTCAACTAACCGCGTAATAGTTAATCATGAAATTCAATTTAAGCACACGCCAGTATATCAACAAATAACATCACATCTGAAGAACTTTAACTAACTAAATAAATAAGATACATAAATGTCTTTTTCTTTTTAACCAAGTGAATTTTGATTTTAAATTACTTTTTTACCTAATATTATATTATATTATTTGTTTCGGTTATTGGGGCTGAGTCACCAAATTCTTTCATAATTTGTCTTCTTGCCGTCTCCAAGCTTCGTTCTCTCGTTCCTGCGTCCGGGAGGGAACTTGTCAAAGGTTCAAACCGTTCGGCAATTCAATAGAGTAGTAATAAATGTGTAGTGAAAGTGAATGAAACTTATCTACCACTTACCTCTTACCTGTATTTATAGTTTTCGCCATGGGCTTGGGATTAGTGAAAAGTTAATCACGGTCCAATTCTAGCCCAATGACTCTAATCACTATTTACCTTAATCCTAGTCTTAATGACCCAGCTTATCTATCGGTCGATCTTGTGCAACCGTCCGGTTAGGTGGGTGTCGGCGCTACTCTTTGGACCGCCCGGTCCGTTCGGTACATAGTTGTTACTCACCCGAGTGAAAGAATGAATGGTCGAGTAGAATGGTGTACAGTGGTGTTTATCTAAGTTGTCCAGCAATATTATCAGTAAAAAAATTAAAGAAACGTCAACCGGTGGGTTGATATCCACGTGGGTCCGTATGGTACACTATTAAACGTTGAATGGGATATCAAATTATTAGTATATGGATCTTTTTCTCATTATTATCTCCATAGCAATTCTAAGATAACTGCCTATTTATCAGGATTAAAGAAATTGATAATTTAGTTTATACAGTATTAAACTTAATACTATAAAAAGTAATACTAAAAAAACGAAGTTGAACGTGTAAGATATATAGATTTGACCTAAAGAGATAGCCTTGACGCTGTGTAGTAAGAAGCATTAGGGTTAATTTAGAGTCAAAATAACTCAGCTAAAGATGATTTGAAAAACTAGTCTCCTGTTGGGTGTATGATTGAGAAATGTTCCCTTAGAACCCTACACATGTGCCTCCCATGTCGACCATTCACATCTGTTACAAGACAATTTCCCTCCTTTCTGTCTCTTATTCCCACTCATGTCCCACAACCATAGCCATTTCCATTTCCTTCTCCTCTCTTCACCATAAATAAATCCCCACATTTCTGCACCATTTCCTAGTCTACCCGTGTGTGTGCCTCAAAAATTTCCTTCACTTCTTTCACCTCACACGCACACTACACACAATAATAACAATATTATTACACTTCCATTATTCTAAACCATCCACACGCACGTGCGCT


Gene Sequence:
>Vu_29612(-)
ATGGCTTCTGCAACAACTGCAAACGACACTGCTACTGCTTCTTCTTCTTCTTCCTTTGGATCTCCCTGTGGGGCATGCAAGTTCCTGCGAAGAAAATGTGCCGCAGACTGCATCTTTGCACCCTACTTTTGCTCCGAACAAGGAGCTGCTAGATTCGCAACCATTCATAAGGTTTTCGGGGCTAGCAACGTTTCCAAGTTGCTCTTGCGTATACCAGAAAACGATCGTTTTGAGGCAATGCTCACAATCGCTTACGAAGCCCAAGCTCGCATCAGAGACCCTGTTTACGGTTGTGTCTCCCATATATTCGCCTTGCAACAACAGGTACAGTTATACATTATACAGATTACATTGTTTCTCTCTACGTTTTCATGTTTTAGAAATGTTACATGATTTTTGTTTTCAGCATTATGAAAAATGTATGCAAATGGGGATGTGGATATAAACAAATTTCCCAGTTATCTTGGATGTTTTTGGTTCAATTTAGACAATTAGTTTTTGTGTAGGTAGCAAGCTTGCAGGCACAACTAGTGGAAATGAAGGCACTGCTGGATCAGAACCAGATGGTGTACAGAAACATGGAGAATCATTGGTCAGAGAATGTTGGACAAGCATTCAATCCGTTTCGTCCCACTTCCATGAATAACCCTATTTCTCCTCAGAGCTCGCTTGACTCAATTGATTACAGCAGCAATATAAATGATGGAATGAGCATGCAAGATGCACAAAACGGAGATGATTTCTCATTCCAAGCTTGTTCTTGGAAAAGATCACACAGCAATGACTTGGGTGAGCTACAAGAATTGGCACTCAGAATAATGAGAAAGTGTGATTAG