Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29590 LG8 27946518 27949175 PREDICTED: probable WRKY transcription factor 21
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   glucosinolate metabolic process, glucosinolate metabolic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, glucosinolate metabolic process
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, transcription cis-regulatory region binding, protein binding, calmodulin binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
T/C 27946522 5_prime_UTR_variant
C/T 27946523 5_prime_UTR_premature_start_codon_gain_variant
T/A 27946808 5_prime_UTR_variant
T/A 27946878 5_prime_UTR_variant
T/A 27946906 5_prime_UTR_variant
A/G 27946933 5_prime_UTR_variant
C/A 27946943 5_prime_UTR_premature_start_codon_gain_variant
G/T 27947035 5_prime_UTR_variant
C/A 27947113 5_prime_UTR_variant
G/T 27947250 missense_variant p.Arg32Met
C/A 27947277 missense_variant p.Ala41Asp
T/A 27947970 intron_variant
T/C 27947971 intron_variant
A/T 27948235 intron_variant
A/C 27948308 intron_variant
A/T 27948329 intron_variant
A/C 27948702 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29590.1
MEEVEQANRAAVESCHRVLSLLSQPRDQVQHRNLVVETGDAVVKFKKVVSLLKSGLGHARVRKVKNPQVPFTHQSIFLDNPNCKTNNHHSKNLQLFQPSFPDNSIVELGSTIKHSLSLAQPSLELSSSGKSALHLTQQASSTHYHFFQQQQQQRVLLQQQQQQQQQQQHLKHQAEMMFRRSNSGINLNFDSTSCTPTMSSNRSFISSLSIDGSVANLDGSAFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSSRCHCSKKRKHRLKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSTNA*


CDS Sequence:
>Vu_29590.1
ATGGAAGAGGTTGAGCAAGCTAATAGAGCAGCTGTTGAAAGCTGTCATAGGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAGTGGTGGAAACTGGAGATGCTGTGGTAAAGTTCAAGAAGGTTGTGTCCTTGCTTAAGAGTGGTTTGGGTCATGCAAGAGTGAGGAAGGTTAAAAACCCTCAAGTTCCCTTTACCCACCAAAGTATCTTCTTAGACAACCCAAATTGCAAAACCAACAACCATCACTCAAAAAATCTGCAGCTTTTCCAACCCAGCTTTCCTGACAATTCAATTGTGGAACTGGGTTCAACCATTAAACATTCACTCTCTCTAGCACAGCCCTCTTTGGAATTGAGCTCCAGTGGGAAAAGTGCTCTTCACCTCACTCAGCAGGCTTCATCAACTCACTATCACTTCTTTCAGCAACAGCAACAGCAAAGGGTGTTGCTCCAGCAGCAACAGCAGCAGCAACAACAGCAGCAACATTTGAAGCATCAAGCAGAAATGATGTTCCGAAGGAGCAATAGTGGCATAAACCTGAATTTTGACAGTACTAGCTGCACACCAACAATGTCATCTAATAGGTCTTTTATTTCTTCCTTGAGCATAGACGGAAGTGTGGCTAACTTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCACAAGAGAAAATGTTCTGCAAGAGGCGATGAAGGAAGCTTGAAATGTGGGAGTAGTTCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGATTGAAAAGGTCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATTCCCCCTGATGATTATTCATGGAGAAAGTATGGCCAAAAGCCCATCAAGGGCTCCCCTCACCCTAGGGGATACTATAAATGCAGCAGCATGAGAGGGTGTCCTGCTAGAAAGCATGTTGAGAGGTGCTTGGAAGAGCCGACCATGCTAATTGTCACCTATGAAGGCGAACATAACCACCCTAAGTTACCAACGCAATCTACAAATGCATGA


Promoter Sequence:
>Vu_29590::LG8:27944518-27946518(+)
ATTTGTTTTATTTGTAACTTAATTAAAAGGTTAAGACTCAATCTAAGTTGTCTGACCTAACATTGTTTAACCTGGGTCTAAGCTTGGCAACCATCTCTCAAGCTAATCTAACTGGCTTGATTTGAACTCTGCATTACATGACCCAAATTGACTTGGCCTGAAGTGGGTCTAACTTGACTCAACCTAACTTTGCTTGACTCGACATAAACCCTATTCTATTCGAATTGATATGGATCAAACTCAACTTGGCCCATTGTGAGCCTCACTTGACTCGATCTAAGTTGCACTCAACTTGATTAATCTCACCCCAAAATGTGCCTGAGTAGACTAGGGACAATGTGGGCCCAATGTGACACGATTCTATGTGGGTCAAACTCAACTTTATATGGACTCAACTCAACTCAACTCAGCATGACATGAACCCGATCAACATTAACTTGACCTATATGCAAATTGTCTTGGAATGACTCAGGAAAACCTAGTCTATGCCCAACTTGAACTCACTCAAATATAATCCAATCTGACTTACATGTGTCGAGTATACTTAACCTAACCTGACTTGTCTGAGATTAAAATTATCTCAACCTAAACTCAGTTCGACCTAACTTGTCCAAATTTATGCTCGGTCTGACTTGGCACGACTTCAGTCAAGTATAACTCGACTTGACTTAGATTTGATTCGTCTTGACCTAACTTAAACTCATTTAATTCGACCTAACTTGGATCTATCTTAACTAGTTTGTAATGTTGGCTTAACCAAACTTAACATAAACTTAATCCAACTTTGTTCATACTAAATTTAGTTTTAGATTGAATAAATGCTTTTATATGTATAAAAATATTTTAAATATTTTTTATTTTCATTTTTTAAATAAATATTTTATTTTAGAAAATTTTTCATGAGTTGGTTCTTAACAACGAGACTTTTGTTAGCATTTTGATTGTATGGATTTTTTTAGTGGAACTTTTTAATCTAAATCCATGTAGGTGAGGTCAAGTTATATGAGTTGAAACAAATTTACATGTCTAATTTAAAAGTATAAAATAAATAACTATCATCTATTAAAAAATATAAATATTTATTTAAAAGTTAAAAGAATGTTACTGTTATTTTAGTTAATGCCTATTTTAAAATTAAAAGAAAGGGATTGCAGTTTCTGCCAACCCAAATTATTTTCATCTACACCATCTGCTCATTTCTCACTAACCAAATTTAGGCTTTGATGGAATCACACATATTGTCAATTTAACTCGCTCATTTCATTCTATGCTCTTATTTTAGTAACTGAAAAACTTCTATAAAAAATAAATGTATGCATTAAAAAAATGCTCACATTTTTTTTAAAGAAAGATTTCATACTCTTATCTAAATATAACGGTTCATCATTAAACTAGCCCTTAATTATATTAGTTGATTTATAATATCTTCTATTGCATGTATAGTGTACTGTTTACATAAACATTAAACTATATTCAAATAAGTGTAACTTATTTATTATTTAAGCTGCAAAAGCACTTAATCTGACAGTTTATATACTCTAATCACTTATTAATGAAGAGATTAAATTTATGAATGACAGAACACAGATAATTTCCAGTTCAAAAGAAGAACAGAACAGTGCAAAAAAATTAATTGAATTGAATCTGAACAAAGACGTTACATTGAACACAGGAATTTGCAAATATGGTATGCGGAAAGCACGCAGGGCACAAGGTAATAAGTCCAAAATTCGAAACTGAAAGAAAAGTAGTGAAACCCAGTGAAGAAATTGAATTGAATAGATAAATGGGAGAAAAAGAGAAAGTAGTAAAAGTGAAGCTGAAATGGGTAGGTCTAAGAAAATATTAATTAAAGCTGAAAAAAGGATGAAAAAGAATAACAAAGGTCTTCGTGTGGGTCCCACCTTCAAATCTGTGACAGGGACAGCAGTTTCATTTCTCAGCTCCTCTTCCTTTGTGCATTTTGCTTATTTAAACAAACTCCTCTTTGTTCTTCTTCT


Gene Sequence:
>Vu_29590(+)
TCTCTCGCAAGAGCTACAAATATTATAATATATGTTTTTTCTTCTTGCTCTGGTTTTAATAATATATATATATGAATTATATATATATTCTCTAAAGTTGGAAGCTTTGTATTCTTGTGTATGATGGTTGTGTTGTGTGAAGTCTCAAGGGAAGCAAAGTCCTCTCTTTCACACCTTTCAGTCTCAAAACCGAGGGAAGAAGAATCTAGGGTTTAGCACCACCAAGTTCGTCAAGGTCTGTGCTTTGGTGCTTTTTCTGTCTTTTCTTTCTCACTGGAAAATTGGGTTGTTTTTTTCTAGAAGAGGATATGCTGCAACTTGCGAGGCACCCTCGGTTTGTTCTGATTCAACGGTTGTTCTTTCTTTCGAAAAAGCATGTCTTTTTTTCTTCCTGAGTTGGAATTTTGAAACTTTAACTTGAAATCCTGTTTCTGTGGCTCTTTGTCTGGTGAAAAATGGGATTTTTTCCACCTGGGTCATTTTATCTGCCTCACAAGGCTGAATGTTGGTGGATGTGGGGGATGTTGCTTTTTTAGTATTCTGGTGTAGTTGGGTTAGTTCTGCCCCTTGTTTGGGGTCTTTAGATTTTATTTTGCCCCTTTTTGTCTGTTTTTTTGTTTTTTTTTATAGAGGCTAATATGGAAGAGGTTGAGCAAGCTAATAGAGCAGCTGTTGAAAGCTGTCATAGGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAGTGGTGGAAACTGGAGATGCTGTGGTAAAGTTCAAGAAGGTTGTGTCCTTGCTTAAGAGTGGTTTGGGTCATGCAAGAGTGAGGAAGGTTAAAAACCCTCAAGTTCCCTTTACCCACCAAAGTATCTTCTTAGACAACCCAAATTGCAAAACCAACAACCATCACTCAAAAAATCTGCAGCTTTTCCAACCCAGCTTTCCTGACAATTCAATTGTGGAACTGGGTTCAACCATTAAACATTCACTCTCTCTAGCACAGCCCTCTTTGGAATTGAGCTCCAGTGGGAAAAGTGCTCTTCACCTCACTCAGCAGGCTTCATCAACTCACTATCACTTCTTTCAGCAACAGCAACAGCAAAGGGTGTTGCTCCAGCAGCAACAGCAGCAGCAACAACAGCAGCAACATTTGAAGCATCAAGCAGAAATGATGTTCCGAAGGAGCAATAGTGGCATAAACCTGAATTTTGACAGTACTAGCTGCACACCAACAATGTCATCTAATAGGTCTTTTATTTCTTCCTTGAGCATAGACGGAAGTGTGGCTAACTTGGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCACAAGAGAAAATGTTCTGCAAGAGGCGATGAAGGAAGCTTGAAATGTGGGAGTAGTTCTAGATGTCATTGCTCTAAGAAGAGGTAGCACATAGCTCATTAATTTCTGTTACTTCAAAGGTTTTTTATTTGTCCTTGTAATCTGTCATTAATAACTGTGTTCTCCACAGGAAACATAGATTGAAAAGGTCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATTCCCCCTGATGATTATTCATGGAGAAAGTATGGCCAAAAGCCCATCAAGGGCTCCCCTCACCCTAGGTTTGTTCTAGCTCTGCTTTCAGATATCTGATTGATTCAAGGGACTCCCCATGAATAAATTGGGCTTTGTAAAATTTTTTAAAGTATATTGCTATTTCTGACAGTTGTGCTGTTTGGTGTGCATTTATGATCTATCTTTCCTTTTAAAGCATTGAAGTTAAATGTGCATGAGAATGATACACTAGCGTGTAGGGCATTTTTTTTTTGTTTCTTATTCTTTATTTTTTAAGTATGCAAACATGTCCCTGATATTTAAATTGTATTCCTTTGTCTGTGTTAGTACTTTGTTATTCCGGTTGATGAGATCGTTATAGACCAGGGGGTGATTGAAGTCATCATTGAATATATTTATGTGTACAAATCTTTCATGTCTCGAAAACATGTTTGAGAAATTAGTTTAGCAATTTGGTAGTCTTGGCACAAACTCCTTCCAGTAGATAACTGTAAGGTGGTTTGCTCTATTGTTTTCACCTTGTCAGTAACCAGGTGAAGGTGAACCACACGGTTTGTGTTTGAGGAAACTGACCTTAATTCCTCCTTATAAATTTTCAGGGGATACTATAAATGCAGCAGCATGAGAGGGTGTCCTGCTAGAAAGCATGTTGAGAGGTGCTTGGAAGAGCCGACCATGCTAATTGTCACCTATGAAGGCGAACATAACCACCCTAAGTTACCAACGCAATCTACAAATGCATGAACTATGTGGAGAGCTTAACCAAGATCAAGTCCATCATTCAATTTGTCAAAACCTTTGCGTGATTGGCTTGAGTTGCTACTGTACATATTTTAAGTGATGCAAGCAGAGATTGATGTTGTTGCCGCAGATTTTGGGTTTTGTTATAGTTTGGCTAACCAGCCGTTTATTTCGAGAGGGTGAGGATCACTGATTAAATGAACAAAGTCTGTAAAATTGACTAGTTTCGATTCCTAAGAACTATTTCATCTTTCTTTAGCCTGTTATAAACATCTCAGGATTTTCTATATGAATGAAATGCTATTAAAAAATGGTACTTT