Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29544 LG8 27280347 27285879 PREDICTED: serine/threonine-protein kinase Nek2
Map

Annotations  
category   relationship type   keyword
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
A/T 27280610 intron_variant
C/G 27280639 intron_variant
A/T 27280643 intron_variant
C/A 27280648 intron_variant
G/A 27280915 synonymous_variant p.Val70Val
G/A 27281060 intron_variant
A/G 27281300 intron_variant
A/G 27281302 intron_variant
T/C 27281367 intron_variant
A/G 27281391 intron_variant
G/A 27281627 intron_variant
T/C 27281628 intron_variant
G/T 27281782 intron_variant
G/A 27281843 intron_variant
G/C 27281976 intron_variant
T/A 27281981 intron_variant
C/A 27282165 intron_variant
G/A 27282209 intron_variant
T/G 27282627 upstream_gene_variant
T/C 27282757 upstream_gene_variant
C/T 27282820 upstream_gene_variant
A/C 27282833 upstream_gene_variant
T/A 27282849 upstream_gene_variant
C/T 27282853 upstream_gene_variant
G/A 27282857 upstream_gene_variant
C/T 27283399 upstream_gene_variant
A/C 27283431 upstream_gene_variant
T/C 27283438 upstream_gene_variant
C/T 27283449 upstream_gene_variant
T/A 27283526 upstream_gene_variant
C/T 27283604 upstream_gene_variant
A/G 27283630 upstream_gene_variant
A/G 27283744 upstream_gene_variant
A/G 27283757 upstream_gene_variant
A/G 27283829 upstream_gene_variant
T/A 27283839 upstream_gene_variant
T/A 27283963 missense_variant p.Ser230Thr
C/A 27283989 synonymous_variant p.Ile238Ile
T/C 27283996 missense_variant p.Phe241Leu
G/A 27284007 splice_donor_variant&intron_variant
C/T 27284104 upstream_gene_variant
C/G 27284163 upstream_gene_variant
A/T 27284249 upstream_gene_variant
G/A 27284275 upstream_gene_variant
C/G 27284410 upstream_gene_variant
A/G 27284788 synonymous_variant p.Arg302Arg
A/T 27284858 missense_variant p.Thr326Ser
C/T 27284859 missense_variant p.Thr326Ile
C/G 27285122 upstream_gene_variant
T/C 27285125 upstream_gene_variant
A/T 27285134 upstream_gene_variant
T/A 27285225 upstream_gene_variant
C/T 27285256 splice_region_variant&intron_variant
C/T 27285445 synonymous_variant p.Leu461Leu
T/A 27285813 synonymous_variant p.Pro583Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29544.1
MEQYEVLEQIGRGSFASALLVRHRHENKRYVLKKIRLARQTDRVRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGVHFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYVRRTRFVETDSVSTLSGRGKRLSFSNDRALNPSISGTELGSVCSTQRGQGFSMCSKEKHCELSVGCVREGCNSNKSRDTKSSTVDRVPRLRTAKEYATPRRQPIPSKTSLTGFKRELLPVSSTPGVKFTPPSRRASLPLPSKTMCMTTPYRANVGLLRGMDSPDVSVNAPRIDKIAEFPLASCQDSLFPVHGTSSTSAQCSSGSPKSADCLITKDKCTIQVVDKVSVPSSVQSPKSAAPVSHECSEHAVSSHFSAEFCQRRFDPSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA*


CDS Sequence:
>Vu_29544.1
ATGGAGCAGTATGAGGTTCTAGAACAGATTGGAAGGGGCTCCTTTGCTTCTGCACTACTTGTCAGACACAGGCACGAAAACAAAAGGTATGTTCTTAAGAAGATCCGGCTTGCCCGCCAGACGGATAGAGTACGCAGATCTGCTCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAACCCATTTATCGTGGAGTATAAAGATTCCTGGGTGGAAAAGGGTTGTTTTGTATGTATCGTCATTGGTTATTGTGAAGGCGGAGATATGACTGAAGCTATTAAAAAGGCCAATGGCGTACATTTTCCTGAAGAGAGACTCTGTAAGTGGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTCGGCCTGGCTAAAATGTTGACATGCGATGATCTTGCATCCTCGGTTGTTGGCACTCCAAGTTATATGTGCCCTGAACTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAACCAGCTTTCAAAGCTCTTGATATGCAAGCACTGATTAACAAAATAAACAAGTCATTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGGGGGCTCGTTAAGAGTATGCTGCGGAAGAATCCAGAGCTTCGGCCCAGTGCGGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCTAGAAGAAGTACTTACCCATTCCAATGGTCTGATTCAAACTATGTAAGGAGGACTCGGTTTGTAGAGACGGATTCTGTTTCTACTCTTTCTGGAAGAGGTAAAAGATTGTCATTCAGCAATGACAGGGCGTTGAATCCTAGTATTTCTGGAACTGAACTAGGTTCTGTGTGTTCTACTCAAAGAGGTCAAGGATTCTCTATGTGTTCAAAAGAGAAACACTGTGAGCTGTCTGTTGGTTGTGTCCGTGAAGGATGCAATTCCAACAAGTCAAGAGACACCAAGTCGTCCACTGTTGATAGGGTGCCAAGATTGAGAACAGCTAAAGAATATGCCACTCCACGAAGGCAGCCAATACCATCAAAGACATCCCTTACAGGTTTCAAGCGTGAGTTACTTCCAGTATCTTCTACTCCTGGTGTTAAATTTACCCCACCATCTCGCAGAGCTTCCCTTCCACTCCCTTCCAAAACCATGTGCATGACCACCCCATATAGAGCTAATGTTGGTCTTCTTCGGGGCATGGACTCTCCTGATGTTTCTGTCAATGCACCTCGAATCGACAAGATTGCTGAATTCCCTCTAGCCTCTTGTCAGGATTCTCTCTTCCCTGTTCATGGAACTTCATCAACCTCGGCTCAGTGTTCTTCTGGTTCCCCAAAGAGTGCCGACTGCTTAATCACGAAAGACAAGTGCACAATCCAAGTTGTGGACAAAGTCAGTGTCCCATCAAGTGTACAATCCCCAAAGAGTGCTGCTCCAGTTTCACATGAATGCTCTGAGCATGCTGTTTCAAGCCACTTCTCTGCCGAGTTTTGCCAGCGCAGGTTTGACCCCTCGTCTTACCAGCAACGTGCAGAGGCATTGGAGGGTTTGCTTGAGTTCTCAGCTCGGCTTCTACAGCAACAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTCGGTCCTGAGAAGGTTTCCCCAAGAGAGACAGCTATTTGGTTGGCTAAGAGCTTCAAAGAAACTGTTGCCTGA


Promoter Sequence:
>Vu_29544::LG8:27278347-27280347(+)
CAATTTCCAAACTAAACTAAGTAAAACCAAAACACTATCAGAACCTATCATTTTTAGAAGAGTGATCAACACATGAAACCAGAGCTTGGTTTGCATATCCAAGAAAACACACGACTAAGTGAAGAGAAGAACTTACCAGTTCAGAACCCAAAACCGATCGGCTCAAACGGAAGCCCTTGACACCGGAGGAGTAGAAACGGTGCCTGAATGGTGATCGGAGGAAGCAAAGGTGAGAATTTCTTAGAGAGAAGATGAAGGAGATGTAGAGAGAAGGAGGAGAGAATGGAGTTTTTCAGAAATCTGGGGAAGAAGGGTGCATGCAGAGAGTGGCGTGAAATTCTGAAAATCAGAGTTTTCCTTCCAACGTCAAAACGAACGTTCACTCAACTGCTCACACCTACCTTCCACTATCTGAGTGTCAGACCCTCTTCTTGACACATGTAATCCACTAAGACGATGTAATCCACTAAGACGGTCCTTGAGTGGATTTTAATGGTTCTGACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATTTATTTATTTATTTATTTATTTATTTACGTCAGAAACAAATTTACTTTAAACATGTATTAAAATTATCAATAGCATGTATTTAGTTTATTATTAGCTACATTATAACGCTATTTACAAATGATAATTAATGAAGTAATAAATGGATAATAATTTTACTAAAACTAAAAATCAATTCTCCCAGCTTGAAACAATCACCTATTTATATTTAACTTTTATCTATATGTACTTTTGGTAGCAGCCTAAGTCTTATCTAGTTATGATTTTGCTGCTACCATATGTAATGTCTCCCCATCTTAATACTACATTATGAGTTGATTGTTCATACTGTGCTATTACAGATTGTGTTGTTGAGGATGCCACAGTTTACTCACTTGCCTTTACATAAACATTTCATTTTCTATTTTACACTTATTCAACATCAATAACAGAAATATTTTTACTTTAAAATATAAATTAGATTAAGATAAATCAAGTAAAAAATATTAAAATATTAAAATATTAATATTTTGTTAGATATTAAAAATCATAAAAAATTTAAAAGTGTATATTTATAATTTTTCTTTAACAATGTGTATCGATACGAGAGCCGTCCGCTTTATTGTGTAAGGTAAAAAAAAAATACCGACAGTATACTAAGATAAAGTAACCTCTGTAATTAATTCGAGGTAGTTTCGGTGTCCGTGTATTAAAATACATATTTGGTAATTAAAAACCTAAATCTGTAATTAAACCTTAATTGAAACAAAAATTGGTGATTGGTGAATCAAAATGAATACCCTGTTAAATTTTTATTTTAATTCTTGCTACAAACAGAAACCGGCAAAGAGCCTTTATAGTCCGTAAGACCTTGCTTATCTGATTGTTTGTGGCATTAATTAAGCAAAACAAGCTTTTGGAAAAAATAATTATTCTCTGAAAAGGAAAATGGTCAAAGGTCGAAGTAGAATGACAGGTACCACTGAATAGTTAATAAAACAAACAATGCTGGTACGGTGTTGCGTTTGGTTTGGTTTGGATTTTGTAAGAGTAATGGCAAACTCTGATTCGTGACCCACCAACCCGAGTAAATATTCTATGCTTTTATTTTAAATAAATTGGTCATGGGAGAGCGGCAAAAGAAAAGAAAAGAATTTGAAGTAAGAGAAACTGAAAAGGAAAGCTGAAAAGAAAATTAATTCGAACAGAAAAAGAAGGTGAAGAAGAAGATGAATGGGGTCAAAGTCTAAAAGCCTATTCTGGGAAAATGACTCAACAGGAAACATATGAATAAAATAAATAAAATAAGAGCACGGGGAAGGTAAGATTCCACGCTGGAATAACGCTCTCTTCACACTTATATTCACTTTCTCTTTACTACTCTTACCATTTCTTCTTCTTCTTCTTCTTCTCTTTCTCTGTTTTCTATAGTTTCTATCCATGTGAAGTGAAGCTCTGAAGA


Gene Sequence:
>Vu_29544(+)
ATGGAGCAGTATGAGGTTCTAGAACAGATTGGAAGGGGCTCCTTTGCTTCTGCACTACTTGTCAGACACAGGCACGAAAACAAAAGGTGACCCTTTTGCTTATATTCACTCTCACGAATAACATCATTTTATACATATATATATTTTATTTTTTTATTTTGTCTGTAAGATTAGGTATGTTCTTAAGAAGATCCGGCTTGCCCGCCAGACGGATAGAGTACGCAGATCTGCTCACCAGGAGGTTGTACTAACACCACCATTTTAAAAAGAAAATGGTTTTTTTTTTTTTTTTCTGGAGCTTCTGAAGTTGATGTTTGTCTAGGGTTTATGGTTTTTATTATTTACTGTTGCATTTGGTCTTTTTATTTTTTATATATAGTGTGCTCATCTTTCTATTTGATGGTTTTTTGTGTTATAATGTGGGGCGGGATGCTTATTTTGTCTTGTTTTTCTACTGCTGAAGATTCTTAGATGCTCTGCTTATTATTCCTTGTTTTTCAATTTGGCAGATGGAGCTTATCTCTAAAGTTCGAAACCCATTTATCGTGGAGTATAAAGATTCCTGGGTGGAAAAGGTTAGCCTTAAAGGAAAAAAGAAACATAAAATATGAAAACTTTTTTAATGTTCTTGTCTTTTCTTATTCTGTAGTGTTTCTGTTTACTTGACTTACTATGAGTTCCAAGAGAATAAATTTGGTTTACGTTTGACAGACGTAACTAATTTTGGACTCCAAATGTTTAATGATGTTTATGTTTATTAACTTATTTCTTTATAAATGCTGAATTTTTATCGTAGTATTGATGATTTTGATGGTGGAACCTCCTTTTTGTAATACAAATTATGGGTTTTAATTTTTGGTGAATTTTGTAACGGAGAACTTGACTTAGTAAACATTGTCACCAGTTTATGTTTTTATGACAGAGGCAATTTGTTTTGCATTTAACATACAACCAAATGGCCTGCCTTTTCATTTTCCATTGCTATTCACTTCGAGCTAGTAAAAGCTAACCTTTTTTTTTTTAATTTGTCTCTTTAATTAAAAAATGAACTCGTAAGCTAAAACATAAGCTCAGGGTTGTTTGGAAACATAGCTTGCTCAAGAGCAAACAGGAATTTTAAGTTTCCGGTGGGAAAAGTAAGATAAATTTAAATCAGTGGGTTAGCTGTGAACTAATTGAAATTTGTGCCTTCACTTTCAGGGTTGTTTTGTATGTATCGTCATTGGTTATTGTGAAGGCGGAGATATGTAAGTCATGATTTGCAATAAGTTTAAGTATATGTGCAACTCATTACTGATATGAGCACATTTTATCTTTTATTTGTGAATTAAGTTGCCCTACTATAATTTTCTTTGCAGGACTGAAGCTATTAAAAAGGCCAATGGCGTACATTTTCCTGAAGAGGTTGGTTGCCGTAACAGTAATCCCTTTTACTGTTTAGCCTGGGATGAATAATTTCAATTCCTATGTGAAAGTGTATGGAATTTAATTAGTTAGTATCTATAAATCTTTTTTCGTACAGAGACTCTGTAAGTGGCTGGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGGTGAATGATTTCTTAGTTCATGTGCTGAAGATGTTATGTTTCCGAGTATCTGAAATCATTTAGCATCCACTTTGTGTTGAACTTTTATTCATGTTGTTTTCAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTAATGGCTTTCTTCATTTGGTTCTCAAACTGCACTGACACTTCATGAATGTGTTTGGACTTTGAACATCTCTAAGTTGTGCTTTGTTTTAGTATCATATGCTTATTTTGTGTGTGTGGTTGCAGGTGACTTCGGCCTGGCTAAAATGTTGACATGCGATGATCTTGCATCCTCGGTCAGTGTTACAGTCAACATATTCCATTGATTACTCTCACCTGATATCTTAGCGTGCTCTTGCTCTTTACTTAGGTTGTTGGCACTCCAAGTTATATGTGCCCTGAACTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGTGAGATAGATTTATCTTTTACCCCTGAGATCACCTAAGATTAATTACTCTTTCCTTTCTCATCTTCAAGTATATTTTCATTTGCAATTGACGTTTGTTGCATTTTAAATAATTGTTAGGATGCTGTGTGTATGAAATGGCTGCTCACAAACCAGCTTTCAAAGCTCTTGTAATTCTCTCTTTGGCTGGCTGCTTTTCTTTTAAGGATACATAACTGGCAAAACATTTTATGTTAATGTCCTATTTGGTATAGAGAAGAGAAGTAGGATGGATGAAAATAAGTCCATAGAGTGGGGATAGGTGAGAAATAAAGTGAGAATTAAAGGTTGATCCACCATATTTTAAAATTAATTTTCTTCACTTCATCCCCTACCAAACACCCCACCTTAATTCCATCTTCATCGATACTTTAAACCAAACAATACCCAAAGGAAATTTGATGAGGATACAAATAATTCATTTGAAACATGAAACGTTATGTTGCATCATCAGTGTCCATGGTGATGTATATTACATTTTGGAAGACAACTTGAAATCGGTTCTTTCTTTTCTGTATTCTATTTGAGCAGGATATGCAAGCACTGATTAACAAAATAAACAAGTCATTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTGTAAGTCTTCTATTTCCTAGTAATCTTTATTTCTTTAGTCCCTTTATCAGTTTACAGGGAAACAATAGCAAGTGTATTGACTGTTATATGAGTAATGAAATATAAAGTATCAATCCCTTTAGGATTAGATCCAATCCAAGTTCCAAACCACAAATCTCTATTTGAATTGATAATCGAGAAAAAAGGAGAAAAGAGGACAGGAATACAAAAGCAGAACATAGAACATGGCAGGTCTCAGAGGTCACAATTCACAATCAATTTAACAACATTGATTACGAGGGTTAGATTCCTCTCTATTCTTCTTTCAAGCAATTTGACTTGGCTCTCAACGTAAGTGATTATGATATATGTATTGAAGATAAAATTCTTTACTCTAGGCCAAATTCAATTCCTTGGCATTTACCCATTGTGCCCACCGAGAACCTTAGTTCCTTAGATGTTCCTAACCCAAACAAGTATGTAACATGTTTATGATATCACACAATTATAAGTCTTATTCGTAGGTTCTCAACCACTGGTGAAATTCCTCAAGATCAAATGCAATAACCAATCTTCCATTTAAGGGGTTGAGTTTAATTTCAATTCCTAACCAATCCAAGAATAGCATTAAGAACTGAAAAGAATAAACTCAATTGAATGAAAAAATCACGAATTGAGACGTAGCAAAAGAAATCATGTAATAATGGTATAGAGATTTTTCTTTCCTCAACCCAGGATTTAGTGAAAAATATTAAAAGAAGTAAAGCATAGAGATGAGATAAAAATGATCTCAATTAGCAGTTTGATTAGATTGACCCTTGATACTCATTTTATTGCCCCCATGACCCCATTCAATGATGTGATCTATGTTACTTATTGTGATAATATGTTTGTGTCATCTTTCAGTCGGGGGCTCGTTAAGAGTATGCTGCGGAAGAATCCAGAGCTTCGGCCCAGTGTATGCTTTTTGTACCTTATTTTTGTACCTTATTTCGTTCTCTTTTGTCAAGATGTGAATTGATTGATGAAAACGAGTTTGTAAAATAATGGTGTGCCTACATAATTGACTCTACATGTCATTTTCTTTGAATGATAAATACAAGCCAGATGTCATCTCATCACAGCTGAAAGTTCATACTAGATGTGGATTCTCTAGTCTCAATTTTTTACTCATGATTTTTATTTTTAGGTTTTAACATGAATTGTGTAAGTGGAATAGATGATTCGTGATTGATCCCATAGTGGCTATCTCCCAGGCTCTATACTTGTATTGTAGTCCTCTTCAAGTATGTGGTGTTAACCATTTTCTAGTGAAGCTAGTTACCTGAGGCTTAGCTTCTGGAAAATGTGAAATATGACGTCAAAAAATGTATGGCTTTCAGTTTGTGTTTATTTACACTTCTGCATAACATGTATCTCTAGAGGTTTCTTAGAGGAATCATTTCTTTGGTTTCCATTTTGAGCATAATTTTTTATGCAGTAGTTATAGTTAGTTTATTTCTGTCCAGTTAACGTCATTTTGGTGGATTTATTTAACATAAATAAAGTGCAATGTTTTGGCAGGCGGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCTAGAAGAAGTACTTACCCATTCCAATGGTCTGATTCAAACTATGTAAGGAGGACTCGGTTTGTAGAGACGGATTCTGTTTCTACTCTTTCTGGAAGAGGTAAAAGATTGTCATTCAGCAATGACAGGGCGTTGAATCCTAGTATTTCTGGAACTGAACTAGGTTCTGTGTGTTCTACTCAAAGAGGTCAAGGATTCTCTATGTGTTCAAAAGAGAAACACTGTGAGCTGTCTGTTGGTTGTGTCCGTGAAGGATGCAATTCCAACAAGTCAAGAGACACCAAGTCGTCCACTGTTGATAGGGTGCCAAGATTGAGAACAGCTAAAGAATATGCCACTCCACGAAGGCAGCCAATACCATCAAAGACATCCCTTACAGGTTTCAAGCGTGAGTTAGTAAGTTCAAGTTCTACACTTCTCAATACCTCCGTATATTTTGATCACTGAAGAAATATAAAGAGAAAAAAATAATTTGATTATACCAAGACAATTAAGTTAACTTCTCAACCTGAATTAGCATCTGAATCATGTCATATTTACCCGATGTCAATTTATTTGTTTGCTTGTTATCATTGCAGCTTCCAGTATCTTCTACTCCTGGTGTTAAATTTACCCCACCATCTCGCAGAGCTTCCCTTCCACTCCCTTCCAAAACCATGTGCATGACCACCCCATATAGAGCTAATGTTGGTCTTCTTCGGGGCATGGACTCTCCTGATGTTTCTGTCAATGCACCTCGAATCGACAAGATTGCTGAATTCCCTCTAGCCTCTTGTCAGGATTCTCTCTTCCCTGTTCATGGAACTTCATCAACCTCGGCTCAGTGTTCTTCTGGTTCCCCAAAGAGTGCCGACTGCTTAATCACGAAAGACAAGTGCACAATCCAAGTTGTGGACAAAGTCAGTGTCCCATCAAGTGTACAATCCCCAAAGAGTGCTGCTCCAGTTTCACATGAATGCTCTGAGCATGCTGTTTCAAGCCACTTCTCTGCCGAGTTTTGCCAGCGCAGGTTTGACCCCTCGTCTTACCAGCAACGTGCAGAGGCATTGGAGGGTTTGCTTGAGTTCTCAGCTCGGCTTCTACAGCAACAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTCGGTCCTGAGAAGGTTTCCCCAAGAGAGACAGCTATTTGGTTGGCTAAGAGCTTCAAAGAAACTGTTGCCTGA