Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29494 LG8 26405007 26406941 PREDICTED: transcription factor bHLH83
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
T/A 26405344 missense_variant&splice_region_variant p.Glu269Val
G/A 26405595 synonymous_variant p.Asp239Asp
G/T 26405786 intron_variant
G/C 26405812 intron_variant
G/A 26406537 intron_variant
A/T 26406660 missense_variant p.Asp94Glu
C/G 26406920 missense_variant p.Glu8Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29494.1
MEEQSNEENPVQLTSCATGGTANDVSHSAEGHLIPNPKFFIAASSGRNESHWTCFPKPSHNYVKYLSESSTYLPNTSTDYMMGGSYLPVGSITDGNVVNGSDRNFFYNDPGKVCAFKPIGSSSNDLDIKKQVGFWRADEGEEVIKVETESSQNFLYAESHPLWTADSLGDKHNALHDPMVMVGAPASLPKSGSSSSKEKARVTDRQRRQRIADNLKALHELLPNPAEGSQAYILDDIIDYVKYLQLQIKEQSGSRLQEESTGIPLVFHEGYGHYINQQMLNEPLEEIMGKLLEEHSAAAGQLLESKGLFLLPMALVDDLSEAMQTFGESALV*


CDS Sequence:
>Vu_29494.1
ATGGAAGAGCAAAGTAATGAAGAGAACCCTGTGCAACTAACATCCTGTGCCACTGGGGGCACAGCCAATGATGTCTCTCACTCAGCTGAGGGTCATCTCATTCCCAACCCAAAATTTTTCATTGCAGCATCATCTGGAAGAAATGAGAGCCACTGGACTTGCTTTCCAAAACCATCCCATAACTATGTTAAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACACTTCCACTGATTACATGATGGGGGGTAGTTATCTACCTGTTGGCAGCATCACTGATGGCAACGTGGTTAATGGATCAGACAGAAACTTCTTTTACAATGATCCAGGGAAAGTCTGTGCCTTTAAGCCTATTGGTTCTTCAAGTAATGACCTTGACATTAAGAAGCAGGTGGGGTTTTGGAGGGCTGATGAAGGAGAGGAAGTGATTAAAGTTGAAACTGAAAGTAGTCAAAATTTTCTTTATGCTGAGAGTCATCCTTTATGGACAGCAGATTCTCTTGGAGATAAGCATAATGCTTTACATGATCCAATGGTAATGGTTGGTGCACCTGCTTCACTTCCCAAATCAGGATCCAGCTCCTCAAAAGAGAAAGCACGTGTCACTGACCGTCAACGCAGGCAACGTATCGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCCAGCAGAGGGAAGTCAAGCGTACATACTAGACGATATTATTGACTATGTCAAATATTTACAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGAAGAATCAACTGGTATACCACTAGTTTTTCATGAGGGTTACGGTCATTATATCAACCAACAGATGCTGAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTCTGCAGCAGCCGGTCAGCTACTAGAGAGCAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGATTTGAGTGAGGCTATGCAAACGTTTGGCGAGAGTGCTCTAGTCTGA


Promoter Sequence:
>Vu_29494::LG8:26406941-26408941(-)
AATGAGATCATTATGAACTTAAGTGGAATGTATGCAATTAATGATCTTTTATAATTTTGATAATTAAACATTTTATATAAACTAAACGATTTTCATCAATGAAATAAGTTGAGTTTTAGTAAAAAAATATTAGAATAAAAGTGATTCTCCGAAGTTCTCTTCAATGATTCAAGAATCCATTTGTTATATCAAATGATTTTTCCATTTTTTGTATGTTGTCCTCCTTGGAAATGATGATTCTTTCCTTCCACCTTTCATATTCATGTCTTCTTCTTCCTTCACCCTAATTCAAAAACTCACTTCTATCAATATTTATCTCATGGTCATACCTTTTGTTTTACATGCCCAAATTAAGTGACTTTTAAGCTTAAATTAAAATTCATAATGTAAATGTTTACCTCGTTTTACAATCACCTCAATTGGAGTCTTACATATCAAGATATCTATGTTTCTTAAAATTATTATCCAACTTTAAATTTTAACAACTTTCCAATCTATCTTCTCACTATTTTTTTTAAATTTCTTACAAATTTCATTCTTAAATTTATTTTAGATTACTTGAGTGCTTTCAAGCTACATTATTATCAACCTAACATGGAAATAATCTATTTGTAGCAAATCTCAATTCTTAAGCATGACAATAAACTATCATTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTATAGATAATCTTTTATTTTCTAAAAAAAAATATATAATAACTCAGTGAAAGATGAAAAATAACCCTTAATCCATTTTATACATTACTAAAACATTTTATTATATAAATTTTCTAACGTGGTCTTTGTAAGAATATCTTAAACTCAAGTTCATACGCATTCTCATCTTTGTATGGATTTTATTATGTATCACGTCACTTTTACAACTTTTCTTCCATTCAAGAGTTTTATAAAGACATGTATACTTTAATATTTTTTATTTATATTTTCAAAATTTTGAAACTTATTATCTTTTATTTTTTATTTTTAATAACTTAGGATTTTATTTAAAACTCAAAGTTAAATATATATCATATTAACATCATTTAATGATAATAACTTATAAAATTTAAGTGACAATAAAATTATTGAAGAGTATAACAAGCTTTACAAATTAAGTGAAAACAATAAAAAATATTTATTATTTTATATTAACTATATGATCATTTTATATTTACTAAAGAAAGTCTCATATTTTATACAAATAAAGACAAAACAAGTAAAAAAATGAAACAAATAACAAATTTAACATACAAATTAAATGGGAGAAACTCAAATTAAGTACACACAAATTGAGTAATCAATATAACAAAACAATTCAATAAAGACTCAATTAAAAATATTAAAGTTCATAAGAAATCTAAAACTTAAATAAAATATTTTATCCTTATTTCTTATAATATTTTTATAATGAAGCATTATTATCTACATGACAACTATTTTCAAGAAATAAAATAAAATAAAGGAGAACCTTCAGTACGTGTATTTTTTCTAAGGGTACATAAAAATAGTAGAAATCCGTATTTTCAATTCAATAAATATTTAGGGGTTACTTTTGGTATTTCATTGTAACAAACCGTCACCAGAAGAATCAGAGTACTATTGGCAGCAGTGCACAATGCACATTGCGTGCGTACGTACCTAGCCGGCAATAACAGAGCATCAACAAGCAGAGCAGAAACAGAGCACGCTCCCTTTCTTACTAAAAACCCTACCGTGGTTGCTAAAATATCTTCATTTTTAGCTATCATATTCGAAACCATTATAGCTTAAGCTGCGAAAACATTACAATATCGACACGTTCTTTGCTACCCTTTTCATTCACTGTGCTCCTCTTCAGTTGGTAGTGTGAAAGTTCTTTCCTTTATCATTTTTTCAGTTACGTAACATGTTTACTTGCAAATGATAAGATTCTATTTTTCCCTTCTTTTGTCTAACTTTTTAGTA


Gene Sequence:
>Vu_29494(-)
ATGGAAGAGCAAAGTAATGAAGAGAACCCTGTGCAACTAACATCCTGTGCCACTGGGGGCACAGCCAATGATGTCTCTCACTCAGCTGAGGGTCATCTCATTCCCAACCCAAAATTTTTCATTGCAGCATCATCTGGAAGAAATGAGAGCCACTGGACTTGCTTTCCAAAACCATCCCATAACTATGTTAAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACACTTCCACTGATTACATGATGGGGGGTAGTTATCTACCTGTTGGCAGCATCACTGATGGCAACGTGGTTAATGGATCAGACAGAAACTTCTTTTACAATGATCCAGGGAAAGTCTGTGCCTTTAAGCCTATTGGTTCTTCAAGTAATGACCTTGACATTAAGAAGGTAAGCCCTTTAAACAGAAAAAAAAAAAACAAATATATGTAAATATCAATTTAAGTAAATTAGTGAAAACGAATATCATAGCATAGTGGATTTTATTATGTCTCCCTTGATTCTTTTATGTGGGTTTTCAGCAGGTGGGGTTTTGGAGGGCTGATGAAGGAGAGGAAGTGATTAAAGTTGAAACTGAAAGTAGTCAAAATTTTCTTTATGCTGAGGTCTGTTTATGTCTTTCAAGCATAATGCATGTACCACATGAATTGTGCCTACGCATTTGTTAAATATTTTGAAGATTCTGAGATTAGTGAAATGATTTATTACTCTAATTATGTGACAGAGTCATCCTTTATGGACAGCAGATTCTCTTGGAGATAAGCATAATGCTTTACATGATCCAATGGTAATGGTTGGTGCACCTGCTTCACTTCCCAAATCAGGATCCAGCTCCTCAAAAGAGAAAGCACGTGTCACTGACCGTGTAAGTAAAACATGCCACACTAATGGCCATTTATCTCATTCAATCTCTTTAATACAATTGGGGTTCCTCACATTTGCTTTTCAATTTAGCAACGCAGGCAACGTATCGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCCAGCAGAGGTAATCTGTTGTTTATGAATAAAAATCGGTCAATCAAAAGTAGGTTTATTTACCATGTTGTCAGTTTATCATTAATACCGTGATACTGTGATCATCACCTACTCAAATTCAATCACCAGGAATAGTAATCAACTTCTCAGTGTTTAAACTATGAATATGTCGAGACAGTGTCATTCATGAAACATTGTCAAAAAAGTTTACTTTCTGTACAGTTTGGAGTTATACTTACATAGATGCATTCATATAGACTGAATCTTACATTTACTTAGTGAACTGAATTTTAATGTGTAGGGAAGTCAAGCGTACATACTAGACGATATTATTGACTATGTCAAATATTTACAGCTTCAAATAAAGGTACCTTTTAACTCCTAATATTGTAATCATTTTGAATCCTATATTCTGATTATTATTGTCGTATTACACTTAATGTCCTAAGGGACATGCATAATAGACGTTCTCCAATAACTTGGGATTAGATAGATGATCTGCTATAACTAAGGAGATTGTTCCTTGCAGGAACAAAGTGGAAGTAGATTGCAAGAAGAATCAACTGGTATACCACTAGTTTTTCATGAGGTATACATTTTATAGTTCATATCAGTAAATACACAGAATCATTGTGAATTCATGTGTTTGCCCAAATAGTGATGGAATAAAATAGTTGCTCATATCAATGTCAAATGATTGAGAGTGCACAGGCTAATGTGTTGAATATTGCAGGGTTACGGTCATTATATCAACCAACAGATGCTGAATGAACCCCTTGAGGAGATAATGGGGAAACTACTTGAAGAACATTCTGCAGCAGCCGGTCAGCTACTAGAGAGCAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGATTTGAGTGAGGCTATGCAAACGTTTGGCGAGAGTGCTCTAGTCTGA