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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_29466 LG8 25978611 25982861 PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 25978707 3_prime_UTR_variant
A/G 25978711 3_prime_UTR_variant
T/G 25979475 3_prime_UTR_variant
C/T 25979510 3_prime_UTR_variant
A/T 25979688 missense_variant p.Ser372Thr
C/T 25979802 missense_variant p.Asp334Asn
T/C 25979809 synonymous_variant p.Lys331Lys
A/T 25979813 missense_variant p.Leu330Gln
T/G 25980363 upstream_gene_variant
A/G 25980450 upstream_gene_variant
T/A 25980642 upstream_gene_variant
G/A 25980671 upstream_gene_variant
C/T 25980707 synonymous_variant p.Ser198Ser
G/A 25980793 missense_variant p.Pro170Ser
C/A 25980991 upstream_gene_variant
A/T 25981049 upstream_gene_variant
A/G 25981055 upstream_gene_variant
C/A 25981097 upstream_gene_variant
A/G 25981130 upstream_gene_variant
T/A 25981131 upstream_gene_variant
G/A 25981148 upstream_gene_variant
T/G 25981219 upstream_gene_variant
C/T 25981248 upstream_gene_variant
G/A 25981341 upstream_gene_variant
C/T 25981355 upstream_gene_variant
A/T 25981369 upstream_gene_variant
C/A 25981387 upstream_gene_variant
A/T 25981405 upstream_gene_variant
A/G 25981410 upstream_gene_variant
C/T 25981701 synonymous_variant p.Glu28Glu
T/C 25981801 5_prime_UTR_variant
A/G 25981849 5_prime_UTR_premature_start_codon_gain_variant
T/A 25981921 5_prime_UTR_variant
A/T 25981957 5_prime_UTR_variant
A/C 25981962 5_prime_UTR_premature_start_codon_gain_variant
A/T 25981983 5_prime_UTR_variant
G/A 25981998 5_prime_UTR_premature_start_codon_gain_variant
G/A 25982007 5_prime_UTR_variant
G/A 25982008 5_prime_UTR_variant
T/G 25982123 5_prime_UTR_variant
G/A 25982257 5_prime_UTR_variant
T/A 25982272 5_prime_UTR_variant
A/C 25982273 5_prime_UTR_variant
C/A 25982388 5_prime_UTR_variant
G/A 25982410 5_prime_UTR_variant
T/A 25982581 5_prime_UTR_premature_start_codon_gain_variant
A/G 25982586 5_prime_UTR_variant
C/G 25982606 5_prime_UTR_variant
A/T 25982612 5_prime_UTR_variant
T/C 25982668 5_prime_UTR_premature_start_codon_gain_variant
G/A 25982725 5_prime_UTR_variant
T/C 25982732 5_prime_UTR_premature_start_codon_gain_variant
A/T 25982733 5_prime_UTR_variant
C/T 25982750 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_29466.1
MKEKVDSPVTVLEDYFRSSDSESSSSKEPAVDSESQDLSKHGSRWHAFLHLFRSGSKKHTNTLHPLSALKLSKRMSTSMRETILPSCFLDANASPCRSPWKIFTHHEIQVATNSFSQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLPWCTRHKIALGIAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDIFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGDFDSRQMNLMLLAASLCIQQSSIRRPSTRQVVQLLNGNLSCFKGVKKTRMPFFRRVFREELHDSE*

>Vu_29466.2
MKEKVDSPVTVLEDYFRSSDSESSSSKEPAVDSESQDLSKHGSRWHAFLHLFRSGSKKHTNTLHPLSALKLSKRMSTSMRETILPSCFLDANASPCRSPWKIFTHHEIQVATNSFSQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLPWCTRHKIALGIAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDIFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGDFDSRQMNLMLLAASLCIQQSSIRRPSTRQARCLYLFQISTSIFCSETVCLIVFTKHVIY*


CDS Sequence:
>Vu_29466.1
ATGAAGGAAAAGGTGGATTCCCCCGTTACAGTTCTGGAAGACTATTTCAGGAGCTCGGATTCAGAATCAAGTTCTTCCAAAGAGCCTGCAGTGGATTCTGAATCTCAAGACCTTTCAAAACATGGTTCTAGGTGGCATGCATTTCTTCACTTGTTTAGAAGTGGGTCGAAGAAACATACGAACACGTTGCACCCTCTCAGTGCCCTCAAGCTCTCCAAAAGAATGAGCACTAGCATGAGGGAGACCATTCTCCCAAGTTGTTTCTTGGATGCAAATGCATCCCCTTGCAGGTCACCGTGGAAGATCTTTACTCATCATGAGATTCAGGTTGCAACCAATTCATTTAGCCAAGAAAATTTGATTGGGAAAGGTGGCTATGCTGAAGTCTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTGGCAATTAAACGTTTAACAAGAGGAACAGCTGATGAAATCATAGGGGATTTCTTATCAGAGCTCGGTGTAATGGCTCATGTAAACCATCCCAATACTGCTAAGCTGGTTGGCTATGGAGTGGATGGTGGAATGTATCTGGTTCTTGAGTTGTCTGAAAAAGGAAGCCTAGCTTCGGTTCTTTATGGTTCCAAGGAGAAGCTACCATGGTGTACAAGGCACAAAATTGCATTAGGAATAGCTAAGGGTATACTATATCTTCATGAGGGTTGTCAAAGAAGAATCATCCACAGGGATATAAAAGCAGCCAATATCTTGCTCACGGAGGACTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGTTGCCAGAAAATTGGACTCACCACACGGTTTCAAAATTTGAAGGAACTTTCGGTTACCTTGCACCCGAATACTTGCTACATGGCATAGTGGACGAGAAAACAGACATATTTGCATTTGGTGTGTTGCTATTGGAATTAGTGAGTGGGCGTCGAGCACTTGATTATTCACAGCAAAGCCTTGTGTTGTGGGCAAAACCATTGCTGAAAAAAAATGATATCATGGAGCTCATTGATCCTTCACTAGCAGGTGACTTCGACTCCAGGCAAATGAATCTTATGCTCTTAGCTGCTTCTTTGTGCATACAACAGTCCTCGATTCGTCGCCCCTCTACAAGACAGGTTGTACAGCTTCTGAACGGCAATCTCAGCTGCTTTAAGGGCGTGAAGAAAACCCGAATGCCGTTCTTCAGAAGAGTCTTCCGAGAAGAACTTCATGATTCCGAATAG

>Vu_29466.2
ATGAAGGAAAAGGTGGATTCCCCCGTTACAGTTCTGGAAGACTATTTCAGGAGCTCGGATTCAGAATCAAGTTCTTCCAAAGAGCCTGCAGTGGATTCTGAATCTCAAGACCTTTCAAAACATGGTTCTAGGTGGCATGCATTTCTTCACTTGTTTAGAAGTGGGTCGAAGAAACATACGAACACGTTGCACCCTCTCAGTGCCCTCAAGCTCTCCAAAAGAATGAGCACTAGCATGAGGGAGACCATTCTCCCAAGTTGTTTCTTGGATGCAAATGCATCCCCTTGCAGGTCACCGTGGAAGATCTTTACTCATCATGAGATTCAGGTTGCAACCAATTCATTTAGCCAAGAAAATTTGATTGGGAAAGGTGGCTATGCTGAAGTCTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTGGCAATTAAACGTTTAACAAGAGGAACAGCTGATGAAATCATAGGGGATTTCTTATCAGAGCTCGGTGTAATGGCTCATGTAAACCATCCCAATACTGCTAAGCTGGTTGGCTATGGAGTGGATGGTGGAATGTATCTGGTTCTTGAGTTGTCTGAAAAAGGAAGCCTAGCTTCGGTTCTTTATGGTTCCAAGGAGAAGCTACCATGGTGTACAAGGCACAAAATTGCATTAGGAATAGCTAAGGGTATACTATATCTTCATGAGGGTTGTCAAAGAAGAATCATCCACAGGGATATAAAAGCAGCCAATATCTTGCTCACGGAGGACTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGTTGCCAGAAAATTGGACTCACCACACGGTTTCAAAATTTGAAGGAACTTTCGGTTACCTTGCACCCGAATACTTGCTACATGGCATAGTGGACGAGAAAACAGACATATTTGCATTTGGTGTGTTGCTATTGGAATTAGTGAGTGGGCGTCGAGCACTTGATTATTCACAGCAAAGCCTTGTGTTGTGGGCAAAACCATTGCTGAAAAAAAATGATATCATGGAGCTCATTGATCCTTCACTAGCAGGTGACTTCGACTCCAGGCAAATGAATCTTATGCTCTTAGCTGCTTCTTTGTGCATACAACAGTCCTCGATTCGTCGCCCCTCTACAAGACAGGCACGTTGTCTCTATCTTTTTCAAATCTCAACGTCGATTTTTTGCAGTGAAACTGTTTGTTTAATTGTCTTTACCAAACATGTAATTTATTAA


Promoter Sequence:
>Vu_29466::LG8:25982861-25984861(-)
ACCAGATCAATCTTCTCCCCCACCAATCTTATGCTCCTCCATCACCACCACCTCCATTCACCGCCACCTCCATCACCGCAATCTAAGCGAGAGAACAACCCTCCCTCCCCTGAAAAATCTAACATGAGAGGAGCAGGTACACTAAAGCATATATTTTCTGCAACCTTCGTTATTATTGGTTTGCAATTTTGGAGCAACGGAGCAGAAGAAAATACTCCAAAATATTAATTGCATGATAGAGGAGCATAAGAGCATAAGAGCAGGAAAAATGAGGAAGAAGAACAGAAAAAACTGGAACAGGAAATGTAGAGGAGAGAGAAGAAAAAGTGCAAGGAGTTAACTTCGTTTATGTCAATTTAACGGAAATGGTCTAATTGATACAATTTATACTACTTTGGGATAAAATAGAAGCATTTTTAAAATCGGGTACTAAACAGAAATTCATCTCTTAACATGGGACGAAATAAGCATTTAATTAATAAAATTTTAAAAAAATTAATCTAATTAAAAGATGTGTACTATAATTTTTTATTGTATTAAAAACTAAATATATTTATAATTTTACACTGAACCGAATATATATTATGTTTTTATTATATAATTTTTAAGGTTTTATTGTTTAAGAAAGTTAGAATATATACATAATTATCATAGTTAGTTTATTTTATATATTATATTTGGCTAGTATTAAAAAAAGTTCAATACCAAAAAATTAACTAAGATCCTCTTGGATAGAAGAAGCTAAGATCTCTCTTTTTTTTCATTAGTAGATTAATTCAACTCAACCTATTTTTGTAATGTAGACTGAATCAAATTACGATGAGCTATTATTTTTATTAATAATAATAACACGATGCTTACATTTTTTGTGAGGAAAAAATTGAAATTTTGGATGAGAGAAGTAAGTAGCCATTTTTTGTTGTCTTGACGAAGTCAATTTGGACACACCTTAAAACTCAATCAATGGAGAATTCAAGCGTACGAAAATAGATTCACTACAGATTCGGAAAAAACATAATCACTAGCTATTATTTTACTTAGAAAAACTGATACTTGGAACATGGAAACAGATAAAAAAAATAGTTTAATAGGGTGAAATGATTGAGGGTGGAGCCTGGGAGATAATTTGGTAGTGAAGAATGGTGAGTAATAATAATAAGTGGTTGAGTTTCTTGGCTGAGGGTTTTGGCTTGTGCGTAGTGATTGTGTTAATTACGCTGAAATGATAGCGAATCGAGTATAATATTTATACTCTTGCGGAATTGGTACAACGTTACGTTGTTTCCAGATAACACATTTTCATCACCAAGCAACTCACACTTCATTACCAGATCCTCTTAATTAATTACTTAATTCATTTGTTTTTCCCTTCTTAAATAAATAATAAATGCCTACCAGTGTTCATATAATGTCAATAATAATGACCAGAATTATGGTGTGGCCACACCTATAACTAACTTCTTGTCTTTAATAATTAAAAATGAAGAAACAAAGTTCTACGCACTTGAATCAACTGTGACGGAATGAGGCGTATTTGATAGGGTTGATCTAACAACTTTTGTTCTCTTTTCATATATATTCTCCTTGAGTATATTCTTAGGGTATAAAATATTATTTTAGAATTATAAGTAGAATTTTCCATACATTAAACCTACCTTTGACTTTTCTTTTATTCTTTTATATCATGTTATTATTTTTCTTTCTAGCAATATAACTTTTACCAAATATTAATGCAATTATCTGATTATATATAACAACTTGGGCAATCAATCCATGTTTGAGAATGAAATAAAGAAACACCATTTTGCACGTGCCGTATCCTTGAAGAGACCAACAACATAGGCGTCTCTGACTCTGACCAGGATAAGGACGATGTTTCATATATCGTTACTATAATTTTGTTACATAATAAAATATTGAAACAACTTTTAATAAATTTTGTCAAACAAAAAGTATATGAAGAATTATATAAAAGTCATTTTGGTATGCATGGCCAAAGC


Gene Sequence:
>Vu_29466(-)
CATATTTTCTTTGCCAACTCTTCTATCTTCTTCTACAATCCAAACTCCAAAAAGCATAATCATAATCCTCACCCTCGCCTCAACTTTCGTTTCTTATCTCGAAAGGTGCCTGATGAAAATCCACAACCTATGATAGCAATAATTATTTATTTATGGCACGAAAATCTGCGTAACGGAGATTAGACTCCAAAATATTATTTAACTACCGTCTATTACTTTTTTTCGGGCCGCAAGATATACTATTTTTTTTTATGCGAAATTCAAAAGAAACATTGTGACTAGTAGCGGGACAAGATTGAAAAGGGCAATGATAGTGGTTTGTTGAAGCGGGGTGGCCAAGTAAACCAAACAACCTCTGATGCTTCTGTCTCTGTTCTCTCCACTGTCCCTTCCTCTGCTTTCCTCTGTTTCTTCTTTGAGTTGAAAACAATATCGGATTTTTTTCTCTGTGCTACTCGGCTGCCTAACTTGTGGTTTACTCTTCCCCTTTCACTGTATTGTATCATCCAAGTTTCTGTGCGATTCACCTAGCGAGTTTCTAAGATGCTGTGTCGCTGTATGGATGCAGAGTAATCTTTCTGTTTCTGATACGTATGTTTTGGGTCTCTTCAAAATATGGTTTTCTCTATCGCTTTGGCTTATCCCTTGGGCTTCTCTGATTCTTACACTTCAGGAAGCTTTCCTTGTCTTTCCCCTGTTTTTACCTAATTGGTTTTCTAGAGAGAAAAAATCAAGATAAGAATTCCAAATTCCATTATTTATTTTTCTGGGATACAACCGTTTTGGGCAATGTCCTTCCGTTTGATATTTTTGCATCCTCTCTTACTCTCCTTGCTTGGGTTACCTTGATATTCCTAGAAAGCCTGCCTAATTTCATGTTTGATGGGTTGTCCTTGATTTGTCGTGTTGTAATTTATATTTACTTTGTAGAGAAAAAGGAAAGAAACATTGAAAAAAAAATCCATTTTTTTGTGTTCCTAAGTTAGCCCTCATCATGAAATTTCTCACTTTCTTGGTGGGTGTGTGATATCTTTTCTTTTACTTGAGGGTTTCTGTGTTCATTGGTCACAAAAAAAAATGAAGGAAAAGGTGGATTCCCCCGTTACAGTTCTGGAAGACTATTTCAGGAGCTCGGATTCAGAATCAAGTTCTTCCAAAGAGCCTGCAGTGGATTCTGAATCTCAAGACCTTTCAAAACATGGTTCTAGGTGGCATGCATTTCTTCACTTGTTTAGAAGTGGGTCGAAGAAACATACGAACACGTTGCACCCTCTCAGTGCCCTCAAGCTCTCCAAAAGAATGAGCACTAGCATGAGGGAGACCATTCTCCCAAGTTGTTTCTTGGATGCAAATGCATCCCCTTGCAGGTCACCGTGGAAGATCTTTACTCATCATGAGATTCAGGTTGCAACCAATTCATTTAGCCAAGGTATGCAACCACATGATTGGATTTCTTTGCTTGGTTTAATTTTCAGTCTAATTACGTATCATCTTTTTTTGTGAAAAGGAATTAGAAATCACAGTAGTTATGGCTGCTGCAAGAATAAAAATTGTTATCGTATATACTAGTCTTCGACTACAGTGTGTTCCGCCTTGTGTGTCAGTTTTAGGAAGTCGTTTCAAAATTTCACATTAATGGCGAATCAACTTCATGTAGCCTTTACCAATACCATACTATTTAGGCGCACATTGTGTTCTTAACGAGATTCCAAACAGACTGTTAGATGATAATGTGAAAGAAAAAAAAAGCTTTATATTGTTACTGTATTTGAATTAAATTCAAAATTTATGTTGGTAGGTGCACTTTATATTTTCAGTGTACTTGGATTAAATTATAAATTAACGTTGGTTGGTGCAATTTATATTGTTAGTGTAATTAAGTTAAATTCTTAATTTTATGTTGGTTGGTGCAGAAAATTTGATTGGGAAAGGTGGCTATGCTGAAGTCTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTGGCAATTAAACGTTTAACAAGAGGAACAGCTGATGAAATCATAGGGGATTTCTTATCAGAGCTCGGTGTAATGGCTCATGTAAACCATCCCAATACTGCTAAGCTGGTTGGCTATGGAGTGGATGGTGGAATGTATCTGGTTCTTGAGTTGTCTGAAAAAGGAAGCCTAGCTTCGGTTCTTTATGGTAATGGTAGTTAATTTCTCCCTTACATTTTTAGAGTCAATATTTGTTCAAAATAATCATTTGGTTGGTCATTAGGTTCCAAGGAGAAGCTACCATGGTGTACAAGGCACAAAATTGCATTAGGAATAGCTAAGGGTATACTATATCTTCATGAGGGTTGTCAAAGAAGAATCATCCACAGGGATATAAAAGCAGCCAATATCTTGCTCACGGAGGACTTTGAGCCTCAGGTATGATAAGGATGCATAAATGAAGGCTTAGGATTCAGTTCTATATGTTTGATTCTATAACTGATCACAACAAGTGCATTTCTCTTTCGGGTTTTGAATTTACATTATAGACAAACCATTTTTGGAAGATTCCCCATTATGTTATGGACGAAACTTCCCTTGGGTCACATCAATTTCAATGTTATGTACGTTAGAATAGACTTAAAAATACTTCAGGAACAAATTGGAACGTTACGATTTTTTTGAACAGATTTGTGATTTCGGGCTAGCAAAATGGTTGCCAGAAAATTGGACTCACCACACGGTTTCAAAATTTGAAGGAACTTTCGGGTTTGTGACCTTGGCAATTAGTTTCTGGTAAAAAAAGCTTTTCTGCTTCCTATTAACTCTGGTCCCATTTTTACTGCTACAGTTACCTTGCACCCGAATACTTGCTACATGGCATAGTGGACGAGAAAACAGACATATTTGCATTTGGTGTGTTGCTATTGGAATTAGTGAGTGGGCGTCGAGCACTTGATTATTCACAGCAAAGCCTTGTGTTGTGGGTATAGTATCTTACTATTTACTCTTTTTACACACAAATTTCATCCCCTTCTCTCCAAATTTTGATTTTATTTTTATCCTAACAAATTTTCAGGCAAAACCATTGCTGAAAAAAAATGATATCATGGAGCTCATTGATCCTTCACTAGCAGGTGACTTCGACTCCAGGCAAATGAATCTTATGCTCTTAGCTGCTTCTTTGTGCATACAACAGTCCTCGATTCGTCGCCCCTCTACAAGACAGGCACGTTGTCTCTATCTTTTTCAAATCTCAACGTCGATTTTTTGCAGTGAAACTGTTTGTTTAATTGTCTTTACCAAACATGTAATTTATTAAACTTTGCTTTGAAATACTTCATTTTTACAAATTTGTTGTTTGTATACAAATTCTAAAACTGTAATTACCTTTAGACTGAGGATAATTAGTGATTGATTACATAATAAAAAAAATTAGTTAGCTGAATCGAAATGATGTTTTATGCTTATGACATGTCATTCAGTACTGATGTGTTCCATATGTAATGTGGTCCACTTTTTTCTAGGGGCAGAACATCTGCGAGTCAACCCACTAACCCTTCTGTGTGTCTGTGTACCTTAACATGTGTGACAAGGTCCATTATGAAGCATGTGACTATGACAAAGTCCTTTATGAAGCATGTGACCCTTTGGTGCAGGTTGTACAGCTTCTGAACGGCAATCTCAGCTGCTTTAAGGGCGTGAAGAAAACCCGAATGCCGTTCTTCAGAAGAGTCTTCCGAGAAGAACTTCATGATTCCGAATAGCTGAATTCAACATAGTACTCACACGATCGTCAAGGCTGAAAGGTGGTCTCTATCATCTCTTCTTTCTTCTGGAACTCAAAATTTTGCCTTTGCCTAGCCCAAAAAACAGCATGCTTCTATAACCTTCAACCTCTGTACATAATAGATTCTTTATAGAAAAATAGGGTCTACCTAAATTATTTATTGAATAAAAACAAATACCTTTTCTCTCCCTTCCTTTACGTAATTCTTACAAATAGGTGGAAAAAGTTCATTACGTGGAAAGCACAAAAAGAAAGGCACTATAAACTTTCGGATGTAAACAAAATCTGTTTTAAGATTTGGGTCTCTTGGAAGCATTTGATCGAAAAAATTGATTTGTGTTGGAGAGTAGTGGAAGTGCATAATCTTCAATAATTGTTAGTAGCTCTTGGAATGTTCATACCAATCAACTGCACCACATTGCATACAGACACGATATATGCTAAGTGAATTGAGGCCGCACAATTCTTATTAAATAGTCATCATATATATACTTTTGCTTTTATC

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