Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_29063	LG8	17763486	17767756	PREDICTED: BEL1-like homeodomain protein 1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/A	17763597	3_prime_UTR_variant
G/A	17763879	3_prime_UTR_variant
C/T	17764044	missense_variant	p.Gly612Glu
G/A	17764482	missense_variant	p.Ala466Val
G/A	17764531	missense_variant	p.Pro450Ser
T/A	17764554	missense_variant	p.Lys442Met
C/A	17764899	intron_variant
C/A	17765276	missense_variant	p.Ala266Ser
T/C	17765445	intron_variant
G/T	17766104	synonymous_variant	p.Ser56Ser
G/A	17766251	synonymous_variant	p.Ser7Ser
C/A	17766288	5_prime_UTR_variant
T/A	17766293	5_prime_UTR_variant
G/T	17766517	intron_variant
G/T	17767417	5_prime_UTR_variant
A/T	17767495	upstream_gene_variant
G/T	17767637	5_prime_UTR_variant
G/T	17767737	5_prime_UTR_variant
A/T	17767738	5_prime_UTR_variant
A/T	17767744	5_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_29063.2

MATYFQSNPKIQAGADGLQTLVLMNPDYVQYSDAPPPPHGGNHLFLNSAATVANNSSLLNLPHAPSPHAPSPHAPSPHTQQFVGVPLSAAAQEPPPSMPHDVSALHGFLPRMQYNLWNTIDPSTAARDATLASQGLSLSLHGEEVRPRSSSAPGASNGGGMAGIQSVLLSSKFLRVTQELLDEIVNVNSGIKVEQGKQSFEKTKAVGESSTAASGDGGEACGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVTASFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGAKVEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGNGSEEKSSKSGEDPAKKREKRPTPEIESKGSKQDVSNSIASTSPSTSAPVVGNVKNQSGFSFMGSSELDGITQGSPKKPRNHEILLSPNRASSMSMDVKSNEANNEQQLSMEERQSRDGYSFMGSQTNFTGGFGQYPMEEIGRFDAEEFTPRFSGNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRGLDIGQPNQFGVLNNSTSHSSAAFESINMQNPKRFAAQLVLDFVA*

>Vu_29063.3

>Vu_29063.1

CDS Sequence:
>Vu_29063.2

ATGGCGACATATTTTCAAAGCAACCCCAAAATTCAAGCAGGTGCTGACGGTCTTCAAACTCTCGTACTAATGAACCCTGACTATGTCCAATACTCCGACGCGCCGCCGCCACCCCACGGCGGAAACCACTTGTTTCTCAACTCCGCCGCCACCGTTGCCAACAACTCCTCCCTACTGAATCTCCCTCACGCGCCGTCCCCTCACGCGCCGTCCCCTCACGCGCCGTCCCCTCACACTCAGCAATTCGTCGGCGTGCCTCTCTCCGCAGCAGCGCAGGAGCCGCCGCCGTCCATGCCCCATGACGTCTCCGCCCTGCATGGCTTCCTGCCACGCATGCAGTACAACCTTTGGAACACAATTGACCCCAGCACGGCGGCGCGTGATGCCACACTCGCTTCCCAGGGACTGTCACTTAGCCTTCACGGTGAGGAGGTGCGTCCAAGGTCATCCTCCGCCCCTGGGGCCTCCAACGGCGGCGGTATGGCGGGGATTCAGAGTGTTCTCTTGAGTTCCAAGTTCTTGAGGGTCACGCAAGAACTTCTGGACGAGATTGTGAATGTTAACAGCGGAATTAAGGTTGAACAAGGGAAGCAAAGCTTCGAGAAAACTAAGGCGGTTGGAGAATCATCAACCGCTGCTAGTGGTGACGGCGGAGAGGCATGTGGGAAACGTAGCTCTGAACTGTCTACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGACGAGGTGGAGCAAAGGTACAGGCAGTACCACAACCAGATGCAGATTGTGACAGCCTCCTTTGAGCAAGTTGCAGGGATTGGTTCTGCGAGGACGTACACAGCACTTGCATTGCAAACAATTTCAAAGCAATTTCGATGTTTGAAGGATGCTATAACAGGTCAAATCAGAGCTGCAAATAAGAGTTTGGGAGAAGAGGATTGTTTTGGGGCTAAAGTTGAAGGTTCTAGGCTGAAATACGTGGACCATCATCTACGCCAACAGAGAGCTATTCAACAGTTGGGTATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCTTACGTGCTTGGCTCTTTGAACACTTTCTCCACCCCTACCCCAAGGACTCCGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGTCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTATTTGGAGGAGATGAAAGAACACGAACTAAATGGAAATGGGTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCCGCGAAGAAACGAGAGAAACGTCCTACCCCTGAGATTGAATCAAAAGGTTCTAAACAAGATGTTTCTAATTCAATAGCTTCAACTTCACCATCAACATCAGCACCTGTAGTGGGTAATGTGAAGAATCAATCAGGATTCAGTTTCATGGGGTCATCAGAGTTAGATGGAATCACACAAGGAAGCCCCAAGAAGCCAAGGAACCATGAAATCCTACTCTCTCCAAATCGGGCTTCTTCAATGAGCATGGATGTTAAAAGCAATGAGGCCAACAATGAGCAACAGCTTTCAATGGAGGAGAGACAGAGCAGGGATGGGTACTCTTTCATGGGGAGCCAAACAAACTTCACAGGTGGTTTTGGACAATACCCAATGGAGGAAATTGGTAGGTTTGATGCTGAAGAATTCACACCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACACATTGTCAGGAACACATCAAACCTTTCTCCCAAACCAGAACATTCAGCTAGGAAGAGGGTTGGACATTGGTCAACCGAATCAGTTTGGTGTGTTGAACAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGGTACTGGACTTTGTGGCATAA

>Vu_29063.3

>Vu_29063.1

Promoter Sequence:
>Vu_29063::LG8:17767756-17769756(-)

ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAGGAAGAAGCAAAAGAAAAGAAGAGCACATGAAGGCATGATGCATATATATCTCTTGCTCTAATCTACTAAAGAAAGATTCTTATCATATGCATTCTGTACATTGAAGTACAGCTTGAAAACTATATATGCTTCTGACATGTGAATATTCATTATTTCGTAAGAAACAGGACATGCAGACCCTATTGTTGTGGTTGTAACATGTGTCCTAGGAAGATCCAACATGCTGCATAAAATGTACATGATGAAAACTAACCTGTTTCTTTAATTCCCAGTTGAGTGAGAACAAAAAGTTGTAATACTAGGTTTTGTGAAAGAATCCAAGACAAGTGTATGAACATGTGAAATAAGCAATGAGTAAATTAATACTAAATATATTGACATTGATCTCTACGAGAATGACAACTTGATTACAAAAGGGCCATTCATAGAACCAACTCTATATAGCATATTAATACCACCTACCACTGCTTTTTCCTTTCTATATCATATGCTACATAATATAATAAACTTCATGAATGAGTGTCCCAAACTTGTAAAATTTTTAGTCTTATTAACATCACAGGCCTTTCATCTGTCACTGCTCATTAGCACAATAATAGTTACTGATGGAGATTGAGAACTTTTCTGGGATGTCGAAAATAATGCTTTCTTGCTGTCTTTGCTGGATTTATTTATTTAATTAATATCTTCATTCTCTCTGTCTTTCTATGTAAATCATGGGATTACCTCACTCACACTTCAAAGGGTTATTAATTACTAATTATTTATCTTCAATTCTAGTCAATATAATCCAAGAGAAGAAGTGTACGATCGAATTACTATGTGCTTATGTCATTTAAAATTTTTAAGTCTTTGGGAGTCATCAAAGATTATTGAGAAAAGTACGACAGATTTTGAAATAAGGGGTTTTCTGCTTATTTTTTCTTCCTTTAGGAAACAGAGAGAGAAATAAAAATACATAAAAAAAGAGTAAATTATTAAGTTTAAATTACAATTTTGCTGATAATGTAAAAGAAAGTTGAAAAAGACATATTCACTGATGAATTTGGACAGATTTGCATAGAAAATTAATGATTAATTTCCACGAATAACTCAAAATATTCCTAACAATTATATCAGCATTGAATAATATAAAAATATGACATTTTTTTACACCAGTTGTTCTCTTAAGACCTGTTGATGAGGCGTGATATAGGTCGTTTGATGCATGAAAAGCCAAAGTGGGACCAATCGCTGATGGCCATGATTCTTACACACATCATGCATGCACTCAATTTGACCCCATTACTTTTCCAAACTCTGCTTTAGTTTTTCCTTTTTTTTTTCTCCTTCTTCTATGATCTTCTTTCTGAATTTACAAATTCATGCAATAACATTGGTAAAAAGTTTGAGGGTACCATTCATTTCTAGTGAATTTGCTTAGAATATTTCTGAAAATAAAAACCTTGCACAAATACATACATACATACATACATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTTTTCAGCTTTTAAAGTATTAAAGTAGGTGTTATGGTGGTTGGTTTTGTGTTCCTTGGCAATTTAATTGCTTTATCTTCAAACTCAGTCATCCAACCACAAAAAATGCACACATAAGTTGAAAAGAAAAAAACATGGAAATTGTGAAAACGACAAGAAGATATTTAATGGAGAAATAAGCAATTGGATCCATCCACCACCCTGTTGTCCATCATCTTCTTCTTCTTCCTTTTTTTTTTCTAATTATTATTTTATTATTACTATTAAACAATGAATGGATTAATTAATTAAGCTTTGTAGAAGAAGACGTTTCCTCGTTTTTCAGCTGGTGGTGACTTTTGCAAACCTTGTTTACATTATTCATTATATACAGATACTTTATTTCTTATCCC

Gene Sequence:

>Vu_29063(-)

AACCCAAACAAGTTTCTTTCTCTCTGTTTCTCTCTCTCTACCTTCAAAAGTTCCTTAGCTTCTCATCAAGGGCTGCATTAGGTGATTTGAAAAGAGAGGGTCAAATCAATAGAACTTCCCCTGTTTTGATCTGTTCGCAGGTACTTCTCCCGATAAAAGGCCACACAGAGATAAAGAGATACTAAAATGTTTCACTTCACTGTTTTCTTTAATAATGACAATAACCGTTGCTGCCCAGAATTAATTTCAATTTCAAAATTTTAAAAAGAATATATTTTTTCAAGAAAAATGTGAATAAATGAGTGGATAATGAGACGAATAAAGATGGGTATCTTTTCCCTCAAGTCTTTTTAACCCCATCTCTCTTCTTTAACTCCTTTTTATTCCACTTTCAGCTGTGGTGGAAGTGCAGGTGATCTGAGTCTGACACAGAGCTTTACCTCTTGCAAGTGAAGGGACTCATAAATCCCAAACAAACATAGATCGGACACACATATTGTGACAAGTGGGTAACTTGATGCATATATCTGCTAATGATGTTTTCTACTGTGTTTGCTTTGGTGAAGACTGTGTGTGCGTCTGTCCTGTGTCTCTCTTTCTCTCTGTTCATTATGATTGAAAATTCTTCCTTTTTTTTTCAGCAGTAGTAGAAGTAGTTCAGAGACGATCATGAACCACGTGCACACATAATCTCATTAATTTCTTTATACAAATAATCAAATCCATCCCTTACCCTTTTCTCTCTCACCAAATCTCTTCTAAGCTTTTTCACCACTTTCATTTTCAAGTTCTTCACCATGCCATAAAAAGAGTATGCACATGGCCAAAAACCAGTTTCATGTACACCTTAATATGTCAAGTGTGTTAAGTTTTCTGCGTAATTCATCATTTCTCCATGTCTTCACTTTCTCAGGATCTTAGAAGGCTAAAAAGTTAGCTTCCGTTACCAAGAATTGTTTGATGGGTTGATCCAAAATTCACACTCCAAACCAGATTCGCAGCACTGAAAGGTACAGCTAACTCAAGTCTTAGAATGTTAATTTTCGTATGTGGGGAAGAGTACTATAATACTATTACGAGGTTTTAAATTCTGGTCATCGTTGTCATGATTTTTGATGTTATGAAAAATTACAGATAGAAATTGTTGATACGATTACGCTTACGGTTGTGCCATGAGTTAAATACAGTCAAAATCGCAATCAGACACTGTATTAATCAAAATCTTAGTTATTTTTGTTTCTTTCTGTGTTGTGATGCGTTCTTGTGGGATCGTTATCTTTGCTATTTTTTACTGTATTACGTTGTGTTGTGATGTGTTCTTATTATGGGATTATTATTATTATTATTACGGAGCGAAGTTTCTATCTTTATTTTTATTTTTCTTTTTGGGATGTGATTGAAAAACATGAAAGTCCGACACTAACTAGGTTTTGTTTTCGGTTTTTCAGTGTGAATAAGTGACAAAGCAGAAGAAAGTTTTCTCCAATGGCGACATATTTTCAAAGCAACCCCAAAATTCAAGCAGGTGCTGACGGTCTTCAAACTCTCGTACTAATGAACCCTGACTATGTCCAATACTCCGACGCGCCGCCGCCACCCCACGGCGGAAACCACTTGTTTCTCAACTCCGCCGCCACCGTTGCCAACAACTCCTCCCTACTGAATCTCCCTCACGCGCCGTCCCCTCACGCGCCGTCCCCTCACGCGCCGTCCCCTCACACTCAGCAATTCGTCGGCGTGCCTCTCTCCGCAGCAGCGCAGGAGCCGCCGCCGTCCATGCCCCATGACGTCTCCGCCCTGCATGGCTTCCTGCCACGCATGCAGTACAACCTTTGGAACACAATTGACCCCAGCACGGCGGCGCGTGATGCCACACTCGCTTCCCAGGGACTGTCACTTAGCCTTCACGGTGAGGAGGTGCGTCCAAGGTCATCCTCCGCCCCTGGGGCCTCCAACGGCGGCGGTATGGCGGGGATTCAGAGTGTTCTCTTGAGTTCCAAGTTCTTGAGGGTCACGCAAGAACTTCTGGACGAGATTGTGAATGTTAACAGCGGAATTAAGGTTGAACAAGGGAAGCAAAGCTTCGAGAAAACTAAGGCGGTTGGAGAATCATCAACCGCTGCTAGTGGTGACGGCGGAGAGGCATGTGGGAAACGTAGCTCTGAACTGTCTACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGACGAGGTAATCTCTTTTATTTCTTCTGTATTTGATCAATGACTGCATAAATAAAACCACAAAATTTTGATGTCCTTTTGTTTCCAATTGAACTCAAAATTCCATTTTAATCATTGAGATAATATTCTTTCTTCCAAGTAAAATTTCTTTGTTTTTATGACATGGTTTGTAGCATTGTTTTGTTGATTTGATCTCTGGAATTGAAGGTGGAGCAAAGGTACAGGCAGTACCACAACCAGATGCAGATTGTGACAGCCTCCTTTGAGCAAGTTGCAGGGATTGGTTCTGCGAGGACGTACACAGCACTTGCATTGCAAACAATTTCAAAGCAATTTCGATGTTTGAAGGATGCTATAACAGGTCAAATCAGAGCTGCAAATAAGAGTTTGGGAGAAGAGGATTGTTTTGGGGCTAAAGTTGAAGGTTCTAGGCTGAAATACGTGGACCATCATCTACGCCAACAGAGAGCTATTCAACAGTTGGGTATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCTTACGTGCTTGGCTCTTTGAACACTTTCTCCACCCGTAAGAACTTTCAAAATTCAATCTTTCAAACTCTTTATTTCCACTTCCATGGTTCTTGCTCTTGAAACAAGTTGAGCTTATCTGGTTTCAGCTACCCCAAGGACTCCGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGTCAGGTAACACCACTGCTACTCAACAACTGTTCAATTGTGTAAAAGAATGAATAAGATTCAATGAGAGCGTGTATGAAGATTGATTGGAATATTGGAATGGAACAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTATTTGGAGGAGATGAAAGAACACGAACTAAATGGAAATGGGTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCCGCGAAGAAACGAGAGAAACGTCCTACCCCTGAGATTGAATCAAAAGGTTCTAAACAAGATGTTTCTAATTCAATAGCTTCAACTTCACCATCAACATCAGCACCTGTAGTGGGTAATGTGAAGAATCAATCAGGATTCAGTTTCATGGGGTCATCAGAGTTAGATGGAATCACACAAGGAAGCCCCAAGAAGCCAAGGAACCATGAAATCCTACTCTCTCCAAATCGGGCTTCTTCAATGAGCATGGATGTTAAAAGCAATGAGGCCAACAATGAGCAACAGCTTTCAATGGAGGAGAGACAGAGCAGGGATGGGTACTCTTTCATGGGGAGCCAAACAAACTTCACAGGTGGTTTTGGACAATACCCAATGGAGGAAATTGGTAGGTTTGATGCTGAAGAATTCACACCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACACATTGTCAGGAACACATCAAACCTTTCTCCCAAACCAGAACATTCAGCTAGGAAGAGGGTTGGACATTGGTCAACCGAATCAGTTTGGTGTGTTGAACAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGGTACTGGACTTTGTGGCATAAACAGGACATTGAAGGGGACAGACTATGGTTAGTGTAAAGAAAGAAGGAATTTTACTCTAGTATAGGTGTATACCTTGCATAGAACCATTTGAGTTCTTAGATAGCTTGGTGATTTCAAAAATATATGCTTACTTGAGTTGTATATTAATTTTGTAATTTTTGAAAATGGGATAGATGGGTTGGTGTCATAAAATTTCAATTGGTAAAGATAGTATATCTTTGATTTGAGAGTATATGTCATGAATTACCTTTCTTTTTTTAAGTCTTAACCTACTTTTCTTTGGGTGGATTACATAAATCAAAGAAAAAGGTACAAGTGGAGCAATATGGTAGATTGTTATGGATGAAAACTTATACTTACCCTTTTCTTTTATATATAAAAGTTCCCATTTATCATTTTCATAACTTTATTTATG