Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_29059	LG8	17708405	17709295	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/A	17708525	missense_variant	p.Cys41Ser
C/A	17708760	stop_gained	p.Ser119*
G/C	17708795	missense_variant	p.Ala131Pro
G/A	17708801	missense_variant	p.Val133Ile
C/T	17708828	missense_variant	p.Pro142Ser
G/T	17708879	missense_variant	p.Ala159Ser
A/T	17709051	missense_variant	p.Asn216Ile
C/T	17709052	synonymous_variant	p.Asn216Asn
C/A	17709151	synonymous_variant	p.Ala249Ala
T/A	17709152	missense_variant	p.Ser250Thr
G/A	17709234	missense_variant	p.Gly277Glu
T/A	17709292	synonymous_variant	p.Pro296Pro
T/G	17709293	stop_lost&splice_region_variant	p.Ter297Glyext*?

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_29059.1

MMESGWKAEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLLRQSIDGFTFKTSSSSPCGNATDHNNNPVGHSYDPRIRTSAASSSSSGMSDGPNIDLALVYANFLNQNPSSESGIESSNPDQVRTAFDPSLENNSRLSNTDVSDPSTLPQEIALTGCLNLPEQPSTHSAEANNGGQICYGDFNSMQTIQKDGIQQCSSHGGAVNFELPPLPDEVEASHDDDHHHMMWSNSEMMTFQATQPPLLGPEVHDADLLIGNWSPFDLP*

CDS Sequence:
>Vu_29059.1

ATGATGGAGAGTGGATGGAAGGCTGAGGTTGAGATATCACCAAATTGTCCAAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAAGGGTGCAGAAGGTACTGGACCAAAGGAGGCTCTCTTCGGAATGTGCCTGTTGGTGGTGGCTGCAGGAAGAACAGAAGAGGTAACAAGACCTTGTTGAGACAATCCATTGATGGTTTCACTTTCAAAACTTCATCATCATCACCTTGTGGGAATGCCACAGATCATAATAATAACCCTGTTGGGCATTCTTATGATCCCAGAATAAGGACTTCTGCAGCTTCTAGCTCCTCATCAGGGATGAGTGATGGACCAAATATTGATCTTGCACTAGTTTATGCAAATTTCCTCAACCAAAACCCCAGTTCTGAATCTGGGATTGAGAGCAGTAATCCAGATCAAGTTCGAACAGCTTTTGATCCTTCTCTGGAGAATAATTCAAGGCTATCAAACACAGATGTTTCTGATCCAAGTACTTTGCCTCAAGAAATTGCTCTTACTGGGTGTTTGAATCTTCCAGAACAACCATCCACACATTCTGCTGAAGCTAATAATGGTGGCCAAATATGCTATGGTGACTTCAACTCTATGCAGACTATTCAAAAAGATGGAATTCAGCAGTGTAGTAGTCATGGTGGTGCTGTGAATTTTGAGCTGCCGCCATTACCTGATGAAGTGGAAGCCTCACATGATGATGATCATCATCATATGATGTGGTCAAATTCTGAGATGATGACATTTCAAGCCACGCAACCACCACTTCTTGGACCTGAAGTTCATGATGCAGACTTGTTAATAGGTAATTGGAGCCCCTTTGATTTGCCTTGA

Promoter Sequence:
>Vu_29059::LG8:17706405-17708405(+)

AAATTATGCGCATTGGAAGAGTATCAAAACCATCATCCAACTTTCCCCGAGGACAACCATAACTCTAGAAGGAAGCAAGAAAGAAAGAAATGTAGAGAACAATATTTTGTAGAGAAGTATGATTTGTTTAATAATGCAATTCGATGATGGATATTTTTGACTTATGCATGCATTCCTTGAAAAGAGTCAAGCATTGAGTTACACATATTAAGCTCTTTAACCTTCTCACGAACAATTATCCACTAATTTCTCCCTCATTGAGTTACACATATTAAGCTCTTTAACCTTCTCACGAACAATTATCCACTAATTTCTCCCTCGTTGCACTATTGCTAACACGCGTAAGCAAAACTTCCTTACCATGTGGCTAACATGCAACTGGACATCTCAACACATATGACAACATCTAACGCTTTCAACCTCAACTTGTCTTACCAAAGTAAATGCTCTCATCATCTGCTATGTATATGTTACACTTACAATATCTACACAGTGTAGAACACACCTAATCTCTGATTAGTGCAACTTATACCCCTCATATAACACTCAACCAACAATTATCATCTCTCCAACCAACACTACATTTATCTAGTGCAAGAATATATACTATGTGTTCATAAGCTACTGGAAGAATCTTCCTAGGATTTGACATGGTCTAGTAAACGTAGAAGAAAACATTGTGCATCTCAATGCTCTTCTTGTAGTAGGAGTAACTCGTACAAACACATGATCCCAACCTCAAATTTCAAAGGTCTTCTCTTATTTGCATATGACTTTTGCATATTACTTTTGCCTAGTGTGAGTTGCTTTCATTTGATTCTAAATCAACTTTATATTTTTTGTGGTTTGCTAGAGTAATTATGACCCTACCAACATTGTCTCACTGTCTTGGAACCAACACAAAAGAGTCATACACCTCCTTCCATATAAGAACTCATGGGGAACTAACCCAATATTAGTGTGAAAATTATTATTGTAAATGAACTCTACTAGGGTTGCATTTTCTCCCCAGATTATCCAAGACTCAAACCTTTAATGAATTATTCTACTTACCTTTTTCTAATTTTGTAAAATGGTTAGTCGACACCCAATTCTAAATGATAGGCAGGAAAAAGAAAATCTAGTAATTAATATGTAATATAAGCTGAAATAAAGATGAAATTACGTGTTTGGAATTACATAAGGCATGTAAAGTCAATAATATAATTCTTCATGTTAGGCATCTAAATATCAGTATGAAAAAAGTTTGTAACTTATTCACAGCCTCAATTCCTAAGCATCATGAAGCACAGTTTATGAGCTATTTGTGATGTAAATTCTTCAATTTGCAACAGTTGGATTGGTGTGAAATGGTGAGTTCCCACTTTCTACTTTGAACTAGAGTAAGTGGTTGGGATGCTTACCCTTTTGTGGAAATGTGTTTCTCATATCTAGGCTGTCTGCTGTTGAAAGAAACCTGAAATGATGATATCGATGCCTTTGCTTCCCGACTCACCCTCATCACCACCACTCCCATCACGCCACGTGTCTTCAACACCGACACTTTCTATTAGCCTACGGGGTTGTGGTACACCACCAGGCCTACCTACCCCATGCATCCTCATGTGCATGCATGGTGCATACACATTCCCAAGATCATAATATCCATCATATCATGTGCATCAAATCAAACTTCACCACAACTCTCAATGTGCTTTGGGAGTTCAAGCCTCACTTCGACCACATATAACCCCTCTCTGCACCAAATTAGCATTACCACCTTCTCTTAACTTGTCCCTCTTTCGCTCTCACACGAAAAGTGTGTGTATATACATGTTTTTCTTTGAAACAAATGCATGTAAGGTTTAAAAAAAAGTCTGCATTTATGATTTTGACCGTAATATCAAGATTTCTTTTATGTGTCTGCGACCATAGTACAACTTTAGTAGTAATATCAAGGTTTTTGTTGTGATTTTGACCTTAATATCACAACTTTAGTAGTAACATCAAGGTTTTTGTGA

Gene Sequence:

>Vu_29059(+)