Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_28964 LG8 16592455 16594548 PREDICTED: homeobox-leucine zipper protein HOX11-like
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Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 16592832 synonymous_variant p.Leu61Leu
C/T 16592906 splice_region_variant&intron_variant
C/G 16592912 intron_variant
A/C 16592920 intron_variant
A/T 16593026 intron_variant
T/C 16593073 intron_variant
G/T 16593432 missense_variant p.Arg134Ser
A/G 16593589 intron_variant
T/C 16593626 intron_variant
A/C 16593630 intron_variant
T/C 16593632 intron_variant
A/G 16593636 intron_variant
A/T 16593643 intron_variant
G/A 16593672 intron_variant
T/A 16593764 missense_variant p.Val196Glu
G/T 16593765 synonymous_variant p.Val196Val
G/C 16593896 missense_variant&splice_region_variant p.Arg206Ser
T/C 16594130 synonymous_variant p.Asn284Asn
A/T,* 16594313 3_prime_UTR_variant
T/A 16594314 3_prime_UTR_variant
A/T 16594319 3_prime_UTR_variant
T/A 16594333 3_prime_UTR_variant
G/A 16594337 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_28964.1
MELALSLGDTSKPFTFLDKPANLPSKDPPGFCIGPGKGFDDKRSDAEKRGSSDPPVQLDLLPFTPVLRSQPPSQLRIPWLTEPCGAARVLDVNLFPEDGDDGTSLSSPSSAVSPFQMDFSMRNGNAEFGGRNKREQQEGEGTRASDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSSTINNNASQIPVELSLSKPRILPFHNSQAQATQPQAQAQAHQIASS*


CDS Sequence:
>Vu_28964.1
ATGGAACTGGCTTTGAGCTTAGGCGACACTTCCAAACCCTTTACTTTTCTCGACAAGCCTGCTAATTTACCCTCCAAGGACCCTCCTGGGTTCTGCATAGGACCGGGGAAAGGGTTTGATGACAAAAGAAGTGATGCTGAGAAAAGGGGTTCTTCAGATCCACCGGTTCAGCTTGATCTTCTTCCTTTCACTCCCGTTCTCAGATCCCAACCTCCTTCCCAGCTACGAATCCCTTGGCTCACTGAACCATGTGGAGCGGCGAGGGTGCTGGACGTGAACCTTTTTCCGGAGGACGGGGATGACGGGACGTCGCTGTCGTCGCCGAGCAGTGCGGTGTCGCCGTTTCAGATGGATTTCAGCATGAGAAACGGTAATGCTGAGTTTGGAGGAAGAAACAAGAGGGAACAACAAGAGGGTGAAGGTACCAGAGCCAGTGATGACGAAGAAAATGGCTCAACCAGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCGAAGCAGAAACTTGCTTTGGCTAAACAGTTGAATCTCCTTCCTCGTCAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTAACAGAAGAGAATAGAAGGTTACAGAAGGAGCTTCAAGAACTTAGAGCCTTGAAAACTTCTCAACCTTTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACAACAACGAACCAAACTTCTTCCACTATCAACAATAATGCTTCTCAAATCCCTGTCGAGTTATCTCTCAGCAAGCCCAGAATATTGCCCTTCCATAATAGCCAGGCCCAAGCAACCCAGCCACAAGCCCAAGCTCAAGCCCACCAGATAGCCTCTTCATGA


Promoter Sequence:
>Vu_28964::LG8:16590455-16592455(+)
AAATATTATTATTTTATATAATAAAGATTTGCTCTTTTTGAAAAAATATAAACCAATAAATAAGTTCACAGGTTTGGTCTTTTAAGTAACAATAGATTAAAGATGTTTACCTAAAAAACAGCAAACGAACAATATTTTATCATAAATTTTCAGACTCTAATTAACTCGTGACAATATTTTATAATATAAATCAGCAGAGAAATGCATGGGAAATTATAGTTCTTATTATTCCAATATCAAGTAAAGACTCAAATAATTGAATTTTGTCCTTTATAATACATTTCATTACGATGGAATTGTTTTTATTATAAAAAACATTCGTTGTGTTAAAAAATTAAAGTAGGTACAAAAAAAATATTATATTTTTATTAAAAAGTGACAATAGAAACAAACCCTAACATATTTCATAGATAACCTGGAAGCTAGAAGCAGGTCATTTCAGTTCAATGGAAGAGTTGTAAAAAATGTGGTAATTTAAGTTTGGTTAATATTATTTAAGTGGGGAAGTGCAGAAATGTAATAGGAGGGTTAATTAATTAGCAAAGGGTTGAGGAAAATGAAAGGGTGAAAGAGTACAGTTGAACTGTTTATACATGCCTTAATAGACATAGCCCACATGATTCTGTATTGGGTACCAAAGACAAATGATCATTCTTATCATACTGTCATGCATAATGAGAATGAGAATAAGCATGATGGTGACGATAGATGAAAGGCCAACATATATACTGGCTAATCAATAAGACAACAGGAGCAGGTTTATAATCCCAGACATGTCTCTCAGATGATATATCATTTTCTTCTTGTCATCATGACGCTATTTTCTTTTTCCTTCTTCTTCTTTCTTTAGCTTGTTTGGTGTACCCTCTTAAATTTCACTCCATTTAATGGGGTTGGTTCAGTAAAAAGAAAACTACATTTAATTACTCTTTGCTTAAACTCAGTTGAAAATTGACTACACATTTTCTTTGTACCACTTTTTCCTGCTTCAGTACGCACCACAACATTACACTAAAATGGAATTTCTTTGTACCCCTTTTCTTTATACCACTTTTTGCTTAAGCATTTTATATCGTCTTATTAAATTTTTGATCATGACAACTCTGCCAGCAAAAACTCTTAACAGAAAGACCATAGAAAAATTCTCTTGTTGTTGGAAGATAGATAAAAAAGAGGAATAAAAAGATGACAAATGCCAAGAGGGTTATGGTGTGGTGTGGTGCTTCGTTCTTAAAATTTATTACACAAGTTAGCTTCACCTACCCATGAAATTAAAACACCAAAATAGGGCTAACTTGATTCACTTAAAACGGTATAAACTGGCAAATAACTAATAGAATCTCAGGCGGCTTTTCTGACCACTAATTATAATTTTCCTTCCTTCTAGATTCTCCAAACTTTATCCTATCATTTCTTAATTCCATTTGCTTCATTAAGCCTAGTTTATTGAAATAAATGCTGAATCGGTACAAATACTTTTCCAATTTTTAAAAAATTGATTACATGTTCGGTTTTGTACAATTATTTTTTACTCATATGAATACTATATTTTAATCTTACACTAATAATTATTTTACAACTTACTTGTATCATTAAATATCTTTATCTATCTATAAAATTTGAACCGGAATATAATGGATTGATTAAAAGTATTTACTAATTCATTTTAATTTGCTAAAATGAATATATTGGTGGTGACTCCTACTCGGTAAAGGATATTTTTTTAATATATATAACAAATATATATAAGTCATTATCTCTCTTATCTTAATGCATGAGAAGTGTGTACAAAGCTACCATATATATAAAATAAAATCTTTGTCTACATGGTGGTGGTGTATTTTATGGCAGTGTGGTGGTGGGGAAAGGCATGACAACGGTTGAATATTTAAATAGATTCACGTGCCTTTGTCAACCTGTGTTTGTCGGTCAATCTTTATTCCCACAAAGGCAAGGGAAGAAACCAACATAAAAAGGCAGTGTTGTTGCTGTTCTTGTTG


Gene Sequence:
>Vu_28964(+)
GCTTCTGAGGAGAAGAAGAAGAACAGGTTGAAGTAGAAGAGGTTTTCTGCAACACAAAACCAACCAACCAACCCAATGTGCCCTTTCTAACCCTCTTCTCCATTCAACAAACTACAACTACTCTCTGTCGGTACATATATAACAACAACAACATCAGTATCTTCAAATTACACACCTTTTATCCACCCCTTTACCATGGAACTGGCTTTGAGCTTAGGCGACACTTCCAAACCCTTTACTTTTCTCGACAAGCCTGCTAATTTACCCTCCAAGGACCCTCCTGGGTTCTGCATAGGACCGGGGAAAGGGTTTGATGACAAAAGAAGTGATGCTGAGAAAAGGGGTTCTTCAGATCCACCGGTTCAGCTTGATCTTCTTCCTTTCACTCCCGTTCTCAGATCCCAACCTCCTTCCCAGCTACGAATCCCTTGGCTCACTGAACCATGTAATGCTCTCTCCCTTTTAAGTTTCTTTCAGTGGTTCACTCATTCAATCTCATCCCTTTTCACACAAACAACATCTTATCGTTGCATTTTTAGTTTACATTAACAATTTACCTCGTTTGAGTATCAGTTAAAAGAGAACATTTTACTAGAAATTGTGAGTCGGGTTTCTTTGTACGAGATTAGACCATAGTAAAACTGATGTTTTCTTTATGTTTGGTATATCAATAGGTATAAAAAGATGTATGTTTTGTTGTTTAGGATGAATGGACGCTGAAAAATTTCTTGCTTTTATTTTATCTTATTGTTTGTTATGATGATGAGAGCTGTGTTGTGTTGTGATGTGTAGCTAAGGTTTGGTGTGTTGTGGTTCTTGACTGTAGGTGGAGCGGCGAGGGTGCTGGACGTGAACCTTTTTCCGGAGGACGGGGATGACGGGACGTCGCTGTCGTCGCCGAGCAGTGCGGTGTCGCCGTTTCAGATGGATTTCAGCATGAGAAACGGTAATGCTGAGTTTGGAGGAAGAAACAAGAGGGAACAACAAGAGGGTGAAGGTACCAGAGCCAGTGATGACGAAGAAAATGGCTCAACCAGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCGGTAAAGTCTACACACAACAACACCATTTTGTTCCTTCTTTGGATAAACTAGATTAGTTTGTTAGTTCTACCTTTTAAATTCTGTAAATGGGTCCTAAATATTTTGTTAAGTTATTTATTAATCTCTAATTTTGACCATAACTTGCAGAAGCAGAAACTTGCTTTGGCTAAACAGTTGAATCTCCTTCCTCGTCAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGGTAACTGAATCTGTAGCGAACAACAACCTTCGTTAACATTTTGTTCAAGTTAATGTTAAACATTGTGTTGTGTTGTGTTTGATTTGTGAATGTGATTTCAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTAACAGAAGAGAATAGAAGGTTACAGAAGGAGCTTCAAGAACTTAGAGCCTTGAAAACTTCTCAACCTTTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACAACAACGAACCAAACTTCTTCCACTATCAACAATAATGCTTCTCAAATCCCTGTCGAGTTATCTCTCAGCAAGCCCAGAATATTGCCCTTCCATAATAGCCAGGCCCAAGCAACCCAGCCACAAGCCCAAGCTCAAGCCCACCAGATAGCCTCTTCATGAGCTTCATTCAATAAACATTTTTTTTGGATGGTTTTTACATATGATATAATATATATATAATATATATATAGTTTGATATTATGGTATATCATAGAGGATAAAGACAAAGGATTCACTACCCTTATTTATCGTTTTGTATATATTTTAGACTCTTCTATATCTTCTTTCATTCATCTGTTTTTTCTTCTCTTCGATTGAAAGAGCTATGAATGATCCTTTTTGTTGATCGGTTAGAATGCACCAAACTTTTTGGTGGTGAAATTGTGAAATGAAAGGCTTTTTTTTTTCTTTTCAG