Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_28893	LG8	15710605	15713585	PREDICTED: transcription factor bHLH130-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/A	15710691	synonymous_variant	p.Ser29Ser
C/G	15710895	synonymous_variant	p.Ser97Ser
A/G	15710905	missense_variant	p.Met101Val
G/T	15710911	missense_variant	p.Gly103Trp
T/A	15710958	synonymous_variant	p.Pro118Pro
C/T	15710970	synonymous_variant	p.Phe122Phe
A/T	15711137	intron_variant
A/G	15711183	intron_variant
T/A	15711185	intron_variant
C/G	15711210	intron_variant
T/C	15711248	intron_variant
T/A	15711252	intron_variant
C/T	15711305	intron_variant
T/C	15711332	intron_variant
A/G	15711357	intron_variant
G/A	15711388	intron_variant
T/G	15711394	intron_variant
A/G,*	15711397	intron_variant
T/C	15711424	intron_variant
G/A	15711430	intron_variant
T/C	15711499	intron_variant
A/G	15711516	intron_variant
T/A	15711536	intron_variant
G/T	15711604	intron_variant
G/A	15711633	intron_variant
T/C	15711647	intron_variant
G/A	15711838	intron_variant
G/C	15711845	intron_variant
A/G	15711851	intron_variant
A/C	15711909	intron_variant
T/A	15711923	intron_variant
C/T	15712143	synonymous_variant	p.Gly215Gly
A/T	15712225	missense_variant	p.Met243Leu
T/C	15712294	intron_variant
T/A	15712305	intron_variant
G/A	15712445	synonymous_variant	p.Glu286Glu
T/G	15712539	splice_region_variant&intron_variant
T/C	15712571	intron_variant
C/T	15712598	intron_variant
C/T	15712676	intron_variant
C/A	15712690	intron_variant
A/C	15712741	intron_variant
T/C,*	15712773	intron_variant
G/C	15712777	intron_variant
A/G	15712780	intron_variant
T/A	15712781	intron_variant
T/C	15712921	synonymous_variant	p.Asp336Asp
C/T	15712931	splice_region_variant&intron_variant
T/G,A	15712933	intron_variant
C/A	15712940	intron_variant
A/G	15712967	intron_variant
T/A	15713007	intron_variant
A/T	15713109	intron_variant
T/A	15713110	intron_variant
G/A	15713125	intron_variant
A/G	15713237	stop_retained_variant	p.Ter380Ter
G/A	15713317	3_prime_UTR_variant
C/T	15713325	3_prime_UTR_variant
C/A	15713343	3_prime_UTR_variant
A/G	15713457	3_prime_UTR_variant
T/A	15713494	3_prime_UTR_variant
G/A	15713512	3_prime_UTR_variant
A/G	15713558	3_prime_UTR_variant
G/T	15713574	3_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_28893.1

MDSHTHHHQDYQLHLHQNQPSSGLLRFRSAPSSLFSNLTPFVSYGADTAASSSFRELEESSNQKCCSKDFSSMNSHKGYGGGLPPHYPRHGSSSATSSSSMEGPYGLVGSMGMDHEAPNKGFGSSLLRQSSSPAGLFSNNNVSFQNGFVTMKGVGNYGGVNDNNGELSPCISRLKNQINFSPRNSSSLGMLSQISEIGSEDIETTSPDDNTTHGGNDTQHFGPGFPYGSWNETLQLSENLSGMKRGRSDSEKIFSDVQNGEPGNQVNILSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLGDKRSNCKCSNMQKADS*

CDS Sequence:
>Vu_28893.1

Promoter Sequence:
>Vu_28893::LG8:15708605-15710605(+)

ACGTTCCTACGGTCTCTGAAAATTGATCGGAGTTAAGGAATGAGTAATAGTAGAGAGAAGATGAAAGTTCTTAGAGAGAAGTTGGAGAAGATGAAGGGTTTGGGTTCTGAGGAAGAAGATGAGTGGTGCAGGTGAGAGAGAGAGTTTTAAAAATCTGGTTTTGTTAAACTCACGTTCGTTTGAACGAACGTCTCCCAAGCTGACACCTGCACACCAAACTCTGAATTGGAAGCTTCTCCCGCGACAGGTGGCGTGTGTGCATGCAGTGTTTAGTGCGTTTTTAATGTTTCAGAGAAATGATGGGCGCGGCTTTCCGTGTATGACAGAGGGGGATGGGATCAGATTAGGGAGTGGGTTTTAATGACTGAGAAATGATGTGGCGTGCATAAGTTGGTGAGGTGTCAGAATTTATCTTTGCTAATTATCCAGGTTCTCACAATACACATCTTAATTCTTGTCCAGAGACATCACAATATTTCTAATAAAAAAATTGGATGGCTCATGACAACTAAAACATGTACACATTAATTTTTTCTTTAACTCTTAAAAATTAAACTCACATGCTTAACTCCATTAAAAAAGGTTAATCTTTACATGTTAGCTTTATCAAAATGGATGTTCATTTAGAAAAAATTTCAATACATTCTCTATAAATCCTTAGAAACTACATATCTTTATAATTTTCTGTTGTTGTTCCCAACGCAACGGAACTCGAACCTTCAAGGGTTAACTGCAATTCCACATGTCTTGAAAATTGAACTTGTTCGAAGGAGAAGTCACTTTAACCATTTGCTATACAATATTTGGTTTGAGAATTTGTAACACAATCTTCAAATGTTTCTCATTCATTCTCTTTATGACTTTTAAAATAAATGAAAATGTCAATTATGAGCTACAACAAATTTGTGAAAAAAAATTCTTAAAAGTACGATTTATATAACTTATAGAAAAAAAAAGAGAACATTATCATAAATATTCATAACCATATCTGATCTAAATATTATTCTTTGAATATGTTAAGTTTTGACACAAATATAAGAATAATCAAATTTAGAATATACCATCAAACATTATCAAAGTGTTTTATCAAAATAATCTTATTTTATAATATGATTTTAATATTATATTTAATGATTTTGACTTTTGTTTACGTGTTTGATTGTAAGGAAAAACAATGGTAAATATAAACAAGACTTATTAAATATGTTCTAAATTTATAAAAGAGAAAAAAAAATAAAGAGTATACATTATTTATACTAAAACAAACTAGTACTAAAAAATTCGATATAAACTAATCAAGCTAAAAAAGCATTTACATACTACAACTTATTGGCTGCCATTATTGTTATGTAATTACTATTATTTTTTTTTTGAAAAATATAGAAAAACACACTGTCTCTTTTTCATTAATTATAATAATATAATTATTTTTAAAATAATAAAATAAAATTAGAAATATTTAAGAGATCTAAGTTTTAACATAATGTCTTAAGCATAAAGTCGAATAAATAAATAGAGGAAGGACAGTGATTGATGGTTTTTGTACTTTCCATTGGGCAAACATAATACCAAGATAAATATGTTGCCTCCCTTACTCTCTTTCTCTTTCTTCATTCATTAGATCTTCCTTGTTTTCACTTCTTTCTAAAGCAAATCTGAAACCTGCTCTTAACACTTTTGTTTATCCCTATCTCCATAGCCACCTCTCTCTCTCTCTCTCAAACCGGTCCCTTTCACTGGATCTCTCTCCCTCGAACTGTGTGCAAACTCATCTCTTCCCTTCCTTCACCTACAAGATCTTATCTCACTACAGCTTAGTCCCTAAGCTGAAAAACACACCAAAAAAACACAAAAGAAAAAAAATTCTCAGAATTTTCCCCCCTAGATAAAAAGGAACCAGTCTTTTCAACAATGATTCCCCAGCTTCTCATTTCACTGTGACTTTACCTTTTCTTTTTAATCTTTTTACAGTGACTTATTATTATATAATTGTTCAACAA

Gene Sequence:

>Vu_28893(+)

ATGGATTCCCATACCCATCATCATCAGGATTACCAGCTTCATCTCCATCAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCACCCAGTTCGCTCTTTTCAAATCTCACACCTTTTGTCAGCTACGGTGCTGACACTGCTGCTTCAAGTAGCTTCCGGGAGTTGGAAGAAAGCAGCAACCAAAAGTGTTGTTCTAAGGATTTCAGTTCGATGAATTCGCATAAGGGTTATGGTGGAGGGTTGCCACCTCACTATCCAAGACATGGTTCTTCATCTGCTACTTCCAGTTCTTCTATGGAAGGGCCTTATGGGTTGGTTGGTTCAATGGGAATGGATCATGAAGCTCCTAATAAGGGCTTCGGGTCAAGTCTTCTCAGGCAGAGTAGCTCTCCTGCTGGCCTTTTCTCCAACAACAATGTTTCATTCCAAAATGGTATTGTTTTTCTTTGATTTTCGATGTTCTGTTGGCCTTGGTTGTGAATAGAACAGATAATTTATAACAATGATTATTAGTTGCTGGCTGTGTAGTACTTGATAGATACGACAATTACACTTGCAAGCCTAGAGATTTTAGTGTATGAGAATAGAAAAGATAGATTCTTTTTTGACATTTTATATGTTTTCTTTTGTTGGCCACTCTTTTGGAAATTTTGAGCTCCTTTACTTCTTCTGTTTTCACTTCCTGTTTTGAGCCCCTCTTTACATTATTTTCGATCTGTTTTGAAATATTTGTAAAGAAAAAGGAGAAAATGGAAACAGGTAATGAAAACTGGAGTAGACTGGTTAATCTTTATATTCATGTTTCTGGAAAAATAATTCGTTTCTAATTCTTTCACTACAGTGTTTATAATCTGAATCTATGCTATCTTGAAGAAGAATAATGAAATTTCATTACAACACTCTGAATGGGATAGATATTCTGGTGTATAAAAATAGAAAGTAATGATTCCTGGAAATACATTTTATGCAGTTCTTGTTTGTTTAAGATCTGATGATCCACATACATTGTCTATATCTGAGTCGGAAATGCAGTTCCTAGTATTCAAACTCTTCCCAGATTGAAATTTTCCCGTGTTCGACATTTAATCAACTCTCTTATACTTCAAGCTTATCACTTAGTGTAGTTAGAGACACAAGATTGGAAACTTAAGCATGTACTGATGTAGTAATATCAATCTGAGGAACTAGATTCTACATCGATTTGACAGCACATGATATATTATAACCGACCCTGGTTCTTATTTTGTGAAGACAAATTTCTTTTAGAGGGGTACAATTCTATTCATTCCTAATGGCTAATGAGAAGTTATAATTTTGCAAACGGCAGGCTTTGTCACCATGAAAGGGGTTGGAAACTATGGTGGGGTGAATGACAATAATGGTGAACTCAGTCCATGTATTAGCAGGTTGAAGAATCAGATTAACTTCTCACCAAGAAATTCTTCTTCCCTGGGAATGTTGTCTCAGATCTCTGAAATAGGGAGTGAAGACATTGAGACAACTAGTCCTGATGATAATACCACTCATGGAGGCAATGATACTCAACATTTTGGCCCTGGATTCCCTTATGGTTCTTGGAATGAGACTCTACAACTGTCAGAAAATCTCAGTGGCATGAAAAGAGGGAGAAGTGACAGTGAAAAGATCTTTTCTGATGTTCAGGTGCATATAGATACTTAATTGTTATATTTTCTTGTTGCATGTCTTGCATTTTAGTTTCTTATTTTAATACAAAAAATTGTTGTGCTCAGAATGGAGAACCTGGAAACCAAGTTAATATATTATCACATCACTTGAGTTTACCGAAAACTTCAGCAGAGATGATTACAATGGAGAAGTTGCTTCAGTTTCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGGTGTGCTACTCATCCTCGTAGCATTGCTGAAAGGGTAGGATTTTGTCTTCAGAATTGAATTTAATTAGAATGTACAGACAATGTTGAAGCTTTTTATACCGTCTTCTATATACGAGGGTAACAATATTTATTCTGGTATTCATAAAATTGATGATTTCTGATTAATAGAGACCTTATCGTTGGAAGTCTTGCGTTAGAAGTTGTACATCAATTAAAAATAAGATGATTTCTATGTAAGTGAGAGTAAATCTACTTTAGAAATTGGTAAATCTACTTTAGAAATTGGTTACATTATATTTAAAATTTACTTAACATTTATACATGAAATAATTTGAAAAAAAAGGTGATGACTTGTTTCAGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTTCCAAACATGGATAAGGTAAGACCTTAAGCACATTTAACTTTGGAATGTGTCGATTGTATGTTACATTATAGTTGTGGTTGAAAAATTAACACTCTTCTTCATTCTCTTGCAGCAAACCAACACAGCAGACATGTTGGACTTAGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGGTATATACAAAAACATACATTTACAAATACAAAAGCAATAAATCTTGTTACTATTATGCATACACTCATTTTTCATACAACATGCAGACTCTTGGTGATAAAAGGTCAAACTGCAAGTGTTCAAACATGCAAAAGGCAGATTCATAAAGCGTGCAAAGATGGCTTGGATTATTGGTGCTTTTAACTTCAATGCTGAACAAACAGAAAGAAAGATGCTAATATATAGGATGATGGCATTACCAAAAATAGAAACAAAAATAGAGTAGAAATAAGAGGAGAAAGATGTGTTATTTGAATTGATAGAAATAGAAGATAAAGGAGGGAGAGAAAATTCTCTTGACATATATCACGAGTGATGAAAAGAATAGAATATAAAAAAGTAGAGTAACTTGTCTTTACATGTTTCATGAATGATATAAAAGTGGAAATCAATCTATAAATGATTGTGTAAAGAAACTTTTTATAACAATAATAAAAATTTAAGCTTTATAATAC