Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_28859 LG8 15260160 15262449 PREDICTED: disease resistance protein RGA2-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 15260170 missense_variant p.Phe474Ile
C/T 15260171 synonymous_variant p.Thr473Thr
G/T 15260427 upstream_gene_variant
T/C 15260484 upstream_gene_variant
G/C 15260505 upstream_gene_variant
C/A 15260748 missense_variant p.Lys461Asn
C/G 15260910 stop_lost p.Ter407Tyrext*?
T/C 15261041 missense_variant p.Ile364Val
C/A 15261106 missense_variant p.Gly342Val
C/T 15261120 synonymous_variant p.Arg337Arg
C/T 15261121 missense_variant p.Arg337Lys
C/G 15261123 synonymous_variant p.Leu336Leu
C/A 15261129 synonymous_variant p.Leu334Leu
G/C 15261147 missense_variant p.Asn328Lys
T/G 15261149 missense_variant p.Asn328His
G/C 15261164 missense_variant p.Leu323Val
C/A 15261168 missense_variant p.Leu321Phe
A/T 15261220 missense_variant p.Leu304Gln
A/C 15261223 missense_variant p.Phe303Cys
G/A 15261229 missense_variant p.Ala301Val
T/C 15261233 missense_variant p.Lys300Glu
T/C 15261234 synonymous_variant p.Lys299Lys
G/A 15261238 missense_variant p.Thr298Met
T/G 15261246 missense_variant p.Gln295His
G/A 15261248 stop_gained p.Gln295*
G/A 15261256 missense_variant p.Ser292Phe
A/G,C 15261265 missense_variant p.Ile289Arg
T/C 15261289 missense_variant p.Lys281Arg
T/A 15261290 stop_gained p.Lys281*
T/C 15261291 synonymous_variant p.Thr280Thr
G/A 15261292 missense_variant p.Thr280Ile
G/A 15261309 synonymous_variant p.His274His
A/G 15261313 missense_variant p.Val273Ala
C/A 15261319 missense_variant p.Trp271Leu
A/C 15261321 synonymous_variant p.Arg270Arg
C/T 15261322 missense_variant p.Arg270His
C/T 15261334 stop_gained p.Trp266*
T/A 15261337 missense_variant p.His265Leu
T/C 15261343 missense_variant p.Asp263Gly
T/A 15261346 missense_variant p.Glu262Val
T/C 15261357 stop_retained_variant p.Ter258Ter
T/A 15261358 stop_lost p.Ter258Leuext*?
G/T 15261361 stop_gained p.Ser257*
T/A,C 15261388 missense_variant p.His248Leu
G/A 15261393 synonymous_variant p.Ser246Ser
C/T 15261394 missense_variant p.Ser246Asn
C/T 15261400 missense_variant p.Arg244Lys
A/T 15261403 missense_variant p.Met243Lys
T/A 15261412 missense_variant p.Lys240Met
G/T 15261422 missense_variant p.Leu237Met
G/C 15261429 missense_variant p.Phe234Leu
A/C 15261439 missense_variant p.Phe231Cys
G/A 15261454 missense_variant p.Pro226Leu
A/G 15261457 missense_variant p.Phe225Ser
T/C 15261464 missense_variant p.Asn223Asp
T/A 15261466 stop_lost p.Ter222Leuext*?
G/A 15261476 missense_variant p.Arg219Cys
G/T 15261484 missense_variant p.Pro216His
G/T 15261491 missense_variant p.Leu214Ile
T/C 15261494 missense_variant p.Thr213Ala
C/T 15261499 missense_variant p.Arg211Gln
C/T 15261501 synonymous_variant p.Leu210Leu
A/G 15261502 missense_variant p.Leu210Pro
A/G 15261506 synonymous_variant p.Leu209Leu
C/T 15261507 stop_retained_variant p.Ter208Ter
C/T 15261513 missense_variant p.Met206Ile
T/C 15261515 missense_variant p.Met206Val
A/G 15261526 missense_variant p.Leu202Pro
A/G 15261534 synonymous_variant p.Phe199Phe
A/G 15261535 missense_variant p.Phe199Ser
T/C 15261537 synonymous_variant p.Lys198Lys
T/C 15261549 synonymous_variant p.Leu194Leu
C/T 15261554 missense_variant p.Val193Met
T/C 15261555 stop_lost p.Ter192Trpext*?
A/T 15261558 synonymous_variant p.Ile191Ile
C/T 15261562 stop_gained p.Trp190*
T/G 15261565 stop_lost p.Ter189Serext*?
C/T 15261587 missense_variant p.Asp182Asn
G/T 15261590 missense_variant p.Gln181Lys
G/C 15261593 missense_variant p.Leu180Val
G/C 15261601 missense_variant p.Thr177Arg
G/A 15261622 missense_variant p.Ser170Leu
T/C 15261634 missense_variant p.Lys166Arg
T/C 15261638 missense_variant p.Ile165Val
C/T 15261686 missense_variant p.Ala149Thr
A/T 15261698 stop_lost p.Ter145Lysext*?
A/C 15261700 missense_variant p.Val144Gly
T/G 15261702 synonymous_variant p.Leu143Leu
C/T 15261705 synonymous_variant p.Gln142Gln
A/G 15261709 missense_variant p.Ile141Thr
T/G 15261718 missense_variant p.Gln138Pro
C/T 15261722 missense_variant p.Val137Ile
G/A 15261736 missense_variant p.Ser132Leu
C/G 15261739 missense_variant p.Cys131Ser
T/G 15261772 upstream_gene_variant
C/A 15261775 upstream_gene_variant
T/C 15261781 upstream_gene_variant
C/T 15261782 upstream_gene_variant
C/G 15261787 upstream_gene_variant
T/G 15261788 upstream_gene_variant
G/A 15261789 upstream_gene_variant
G/T 15261797 upstream_gene_variant
G/C 15261801 upstream_gene_variant
G/T 15261805 upstream_gene_variant
G/T,A 15261806 upstream_gene_variant
G/T 15261808 upstream_gene_variant
G/T 15261809 upstream_gene_variant
T/G 15261810 upstream_gene_variant
G/A 15261811 upstream_gene_variant
A/G 15261850 upstream_gene_variant
A/C 15261862 upstream_gene_variant
T/C 15261876 upstream_gene_variant
A/G 15261880 upstream_gene_variant
A/G 15261883 upstream_gene_variant
A/G 15261889 upstream_gene_variant
C/T 15261890 upstream_gene_variant
T/G 15261896 upstream_gene_variant
T/C 15261904 upstream_gene_variant
T/C 15261913 upstream_gene_variant
T/C 15261914 upstream_gene_variant
C/A 15261925 upstream_gene_variant
T/C 15261928 upstream_gene_variant
G/A 15261934 upstream_gene_variant
G/C 15261936 upstream_gene_variant
T/C 15261940 upstream_gene_variant
C/T 15261964 upstream_gene_variant
A/G 15261967 upstream_gene_variant
G/A 15261969 upstream_gene_variant
A/G 15261989 upstream_gene_variant
A/T 15262009 upstream_gene_variant
C/G 15262014 upstream_gene_variant
T/G 15262046 upstream_gene_variant
C/T 15262047 upstream_gene_variant
G/T 15262049 upstream_gene_variant
T/C 15262090 synonymous_variant p.Ala120Ala
C/A 15262097 missense_variant p.Arg118Ile
T/C 15262126 synonymous_variant p.Ser108Ser
G/A 15262138 synonymous_variant p.Arg104Arg
T/A 15262145 missense_variant p.Lys102Met
G/A 15262154 missense_variant p.Ser99Phe
C/T 15262158 missense_variant p.Gly98Ser
G/A 15262172 missense_variant p.Ala93Val
C/T 15262186 synonymous_variant p.Leu88Leu
G/C 15262198 missense_variant p.Asp84Glu
C/G 15262200 missense_variant p.Asp84His
A/G 15262201 synonymous_variant p.Phe83Phe
C/A 15262225 missense_variant p.Glu75Asp
T/C 15262246 synonymous_variant p.Gln68Gln
A/T 15262249 synonymous_variant p.Val67Val
A/C 15262250 missense_variant p.Val67Gly
C/T 15262251 missense_variant p.Val67Ile
C/G 15262260 missense_variant p.Glu64Gln
G/A 15262266 synonymous_variant p.Leu62Leu
T/A,C 15262267 synonymous_variant p.Ala61Ala
G/C 15262268 missense_variant p.Ala61Gly
A/C 15262276 missense_variant p.His58Gln
G/T 15262281 missense_variant p.Pro57Thr
T/G 15262283 missense_variant p.Asn56Thr
G/T 15262290 missense_variant p.Gln54Lys
G/A 15262294 synonymous_variant p.Ala52Ala
A/G 15262318 synonymous_variant p.Leu44Leu
G/T 15262320 missense_variant p.Leu44Ile
T/C 15262324 synonymous_variant p.Thr42Thr
G/A 15262325 missense_variant p.Thr42Ile
G/T 15262328 missense_variant p.Thr41Asn
C/T 15262330 synonymous_variant p.Ala40Ala
G/T 15262331 missense_variant p.Ala40Glu
G/C 15262350 missense_variant p.Gln34Glu
G/T 15262353 missense_variant p.Arg33Ser
C/G 15262356 missense_variant p.Asp32His
A/G 15262365 missense_variant p.Phe29Leu
C/G 15262367 missense_variant p.Gly28Ala
G/A 15262388 missense_variant p.Ala21Val
G/A 15262391 missense_variant p.Ala20Val
G/A 15262396 synonymous_variant p.Ala18Ala
G/C 15262397 missense_variant p.Ala18Gly
C/T 15262405 synonymous_variant p.Arg15Arg
G/C 15262407 missense_variant p.Arg15Gly
G/A 15262410 synonymous_variant p.Leu14Leu
G/A 15262411 synonymous_variant p.Leu13Leu
G/C 15262413 missense_variant p.Leu13Val
C/T 15262414 synonymous_variant p.Ser12Ser
T/C 15262418 missense_variant p.Glu11Gly
C/T 15262420 synonymous_variant p.Ala10Ala
C/G 15262444 synonymous_variant p.Ala2Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_28859.1
MAESLLFSFAESLLRKLATAAVQEASLGFGVDRQLQQMKATTALIKAVLLDAEQKNPHSSALSEWLVQVKRVFSEAEDIVDDFDCEALRKHVANTYGGSSRKVRRFFSTSNPVVYRLRMAHHIQDINTRNVLIKILSSAPNPASVNFNSFETEQLQNHLRNKLQDQKFLLVLDDVWNEDPARWDELKEIMDLSVKGSKILVTTRSHAVVAAMHTKSSNSYLLECLSEEDSLSLFLKSAFEDGDEKKHPQFSEIGKEIVKKCGGLPLAVKTLGSSLFSKFDKKEWESIRDNEIWNSKQNEKGIFPALKLSYDQLPSYLKPCFASFSLYQQDSVFTAAEVCMLWGALGFLPPPKQGESMTDISTQYLHELWTRSFLLDFVDLGGDCYFKLHDLVSDLAVFVGKGEFERIDHRNPKISENIQHLAFEENNFYGETLLPTSPRTVIFLNGGSDKDFLKTLLSRCKGLSGYKDVQTLYVPY*


CDS Sequence:
>Vu_28859.1
ATGGCGGAATCACTTCTTTTCAGCTTCGCGGAATCGCTCCTACGGAAGCTTGCCACTGCTGCCGTTCAAGAAGCTTCTTTGGGGTTTGGTGTGGATCGCCAGCTACAACAGATGAAAGCGACTACAGCACTTATCAAGGCTGTGCTGTTAGATGCCGAGCAGAAGAATCCGCATAGCAGTGCACTGAGCGAATGGCTGGTTCAAGTCAAGCGCGTGTTTTCTGAGGCTGAAGACATAGTCGATGATTTTGACTGCGAAGCGTTGCGGAAGCATGTTGCCAACACCTATGGTGGCTCCTCAAGGAAGGTACGCCGTTTCTTCTCAACAAGTAATCCTGTTGTTTATCGTCTTAGAATGGCACATCACATTCAAGACATCAACACCAGGAATGTGCTCATTAAAATCCTCAGTTCAGCTCCAAATCCAGCTAGTGTAAACTTCAATAGCTTTGAGACGGAGCAACTTCAAAATCATTTGAGGAACAAACTTCAAGATCAAAAGTTCTTGCTCGTGTTGGATGACGTGTGGAACGAGGATCCTGCAAGATGGGATGAGTTGAAGGAAATAATGGATTTGAGTGTTAAAGGGAGTAAAATTTTAGTGACTACTCGTAGCCATGCAGTAGTTGCTGCGATGCACACTAAATCCTCAAATTCGTACCTTCTAGAATGTCTTTCCGAAGAGGATTCTCTTTCTCTATTTCTGAAATCTGCTTTTGAAGATGGAGATGAGAAAAAGCATCCACAGTTCTCGGAGATTGGAAAAGAAATCGTAAAAAAATGTGGAGGATTACCATTGGCAGTGAAAACGTTGGGGAGTTCACTGTTCTCGAAATTTGACAAAAAGGAGTGGGAGTCTATAAGAGATAATGAGATCTGGAATTCAAAACAAAACGAAAAAGGCATTTTTCCTGCTCTCAAACTAAGTTACGATCAACTCCCTTCATATTTAAAACCTTGTTTTGCTTCTTTCTCCCTTTACCAACAGGATAGCGTGTTTACTGCTGCTGAGGTTTGTATGTTATGGGGAGCACTCGGTTTTCTTCCACCACCAAAGCAAGGTGAATCAATGACTGATATTTCCACTCAATATTTGCACGAACTATGGACAAGATCGTTTCTTTTAGATTTTGTTGACCTTGGTGGTGATTGTTATTTTAAATTGCACGATTTGGTGTCTGATCTTGCAGTGTTTGTTGGGAAAGGTGAGTTTGAAAGAATAGATCACCGCAATCCAAAAATATCCGAGAATATCCAACATTTGGCATTTGAAGAAAATAATTTTTATGGTGAAACTCTTCTCCCCACTAGTCCCAGAACTGTCATTTTTCTTAATGGAGGGAGCGATAAAGATTTCTTGAAAACATTGTTGTCAAGGTGCAAAGGCTTGAGTGGTTACAAGGATGTGCAAACACTTTACGTTCCTTACTGA


Promoter Sequence:
>Vu_28859::LG8:15262449-15264449(-)
TCAAAATGGACTGATATTCAGCATGAAGCTAGAGAATATCCTATTTACATATAAAATTTGTATCTGCTGTAAGTTTATGCATTTTATTCTTTTAATTTTCAACTTTCTTACCAATATTTTCTTGTATATAAAATAAGGTATTGGCAGGTCAATGTTAAATAATAGTGTTATTAACATTAAGTGTATGTCAAATCAAGAAGAAGAATATATATATTGTCATGCTTTGAATGTTTCTTGAGATCCTTGCTGTGGAGCTGGAAGTGAAACATAAGCACTTTAAAATACCCTTAGATAACATCGTGTATATTTAGAAGCTTTTAAAAAGTTTGACGACCAATTTAAAAATTAATGTTATAAAATGAGACCCTTTTACTTTTATTATTGATTAATTCAAAAGTAATTTTTTAATTTATTATTGTGTTAACTTTTATACAAAATGTTACTTTTTAAATCATTTGTTTTAAAAATATTTCAAAATAATTTTTTAAATTAGTTTTTTTTTTCAGCTAACCGATTCAAAGAAGGTTTCTTTTACCATATTTCCAAAATCCGTAAAATGTAATTATTTTTAGACTTTTTAATTAATTTACCGTAAAATGTAATTATTTCTTTTTACCAAATTTATTTATTTATAAATTGAATAAATTTAAAAATAAAAAAATAAACAATTGATTCAATATAATAAATATTAGTATGCTAATAAGAAAATTAAACTCTTAACAACTTCAATGATGTTTGGTTTATTATTAAATTGATAATTAATATTATTGAGAAAAATTAATTATATGTTAATGTTAACTTTCTAAATAAACATATATAACAATTAACAATTACTAAATACTAAAGTCCTCAACCATTAATGAAATTTAAACAAAATTAAAGTTTACAAAATGTAAATTGTATTCCAAATAGACTCTTTGCCCGGATAAAGATTTAACCTTTCCAATGAATTATTGATAAAATTAAGCTAAATCAAAAGCACAAAAATGGATGGATAAAGAGTCTATAAATTCCTTATAATATTTCGTATATGTAGAGGATTAAGTGATACTAATCACAATGTTTTAATTAAACTTTATGCTTCATATTATATTTTTCACTCAAAACTGATGATAATAGTAAAGAATTAATAGAAGCATGCATGACTATTAAATCGTGTGGAGAAATTTTGATAACTTTGACATGTATGCTATACTAAAAAGTGATCACTTCCGAATTCTACTAAAATAACATTATTTTGTTCCCATGTCCTTCGCTAATGTGAAGATCAACTTAAAATAATGGAACTTCATATAACAGTATCATTATTTGTTACGAAGGATTAAATCTGTAACCTTCTAAAAAAAGAAGTCTAAATAAAACAAAGTTTAGAAGAGAAATCAAAACAAAAAATACGTAAAAAAACAAAAAACATAATTAATTCTAATTATTCGAAGCTTAAACACTATTAACTCTTTTTATTGCCGCTCTTCATCTATATTTCAGTTAGCTTTATGCATATTTCCCAGGTGTTTTATTCTTATGCATTTATTCATTTATTGAAGCATTTCTGTTTTAAAATGTTATTCTTTCAAATTCTTTTAATACTTTAAATAATATTTATATAAACCTTGCTCATTAAATGAGTGTTGGCACGATGCTCAGTTGTCAACGCCAAATAGTGGTTAGGTACATGAAACCTATACGAAATTTGTGTTAAATTAGTGAAAATAATTTTAATTAGTAATTATAGGACTTAAGTTTTTTATTATTGATTTACTTTAAGTAAGAGCTAACGAGTATTACTAGGAATTGAAATAGAGAGTTGCAGTCTTAGGTTGGATAAAAACAAGTGTGATAAACAAGGAGAAAGATGTATAAATGTCATACATGCAGGCTGTTATATGTCTTTTGTGTGTGTACGAATCACATATACCAAAACGGCCGACGGAATATATATTTCTTTTATAAATATCATAATGTTGTCAAATGATTCACAATTGCGTTCTTCTCTTATACTC


Gene Sequence:
>Vu_28859(-)
ATGGCGGAATCACTTCTTTTCAGCTTCGCGGAATCGCTCCTACGGAAGCTTGCCACTGCTGCCGTTCAAGAAGCTTCTTTGGGGTTTGGTGTGGATCGCCAGCTACAACAGATGAAAGCGACTACAGCACTTATCAAGGCTGTGCTGTTAGATGCCGAGCAGAAGAATCCGCATAGCAGTGCACTGAGCGAATGGCTGGTTCAAGTCAAGCGCGTGTTTTCTGAGGCTGAAGACATAGTCGATGATTTTGACTGCGAAGCGTTGCGGAAGCATGTTGCCAACACCTATGGTGGCTCCTCAAGGAAGGTACGCCGTTTCTTCTCAACAAGTAATCCTGTTGTTTATCGTCTTAGAATGGCACATCACATTCAAGACATCAACACCAGGTTGGCCAAACTTGCAGATCAAAGAAGCATGTTTGGCCTTCAAATCATTGACCATGATACACGTGTGGTGCAACTGAGGGAAATGACACATTCTCATGTGAACCCTTCCAATGTTACAGGAAGAGAACACGATAAAAAGGAAATAGTAAAACTTTTGGTACAAGATGATGATCGTGAAAGTCTTTCTATTATTCCCATTGTTGGAATGGGAGGTTTGGGAAAAACCACACTTGCTAAGTTGGTCTTCAATGACACCACCATTCATGCATGTTTTCAGTTGAGAATGTGGGTATGTGTCTCTAATGATTTTGAACTTAGGAATGTGCTCATTAAAATCCTCAGTTCAGCTCCAAATCCAGCTAGTGTAAACTTCAATAGCTTTGAGACGGAGCAACTTCAAAATCATTTGAGGAACAAACTTCAAGATCAAAAGTTCTTGCTCGTGTTGGATGACGTGTGGAACGAGGATCCTGCAAGATGGGATGAGTTGAAGGAAATAATGGATTTGAGTGTTAAAGGGAGTAAAATTTTAGTGACTACTCGTAGCCATGCAGTAGTTGCTGCGATGCACACTAAATCCTCAAATTCGTACCTTCTAGAATGTCTTTCCGAAGAGGATTCTCTTTCTCTATTTCTGAAATCTGCTTTTGAAGATGGAGATGAGAAAAAGCATCCACAGTTCTCGGAGATTGGAAAAGAAATCGTAAAAAAATGTGGAGGATTACCATTGGCAGTGAAAACGTTGGGGAGTTCACTGTTCTCGAAATTTGACAAAAAGGAGTGGGAGTCTATAAGAGATAATGAGATCTGGAATTCAAAACAAAACGAAAAAGGCATTTTTCCTGCTCTCAAACTAAGTTACGATCAACTCCCTTCATATTTAAAACCTTGTTTTGCTTCTTTCTCCCTTTACCAACAGGATAGCGTGTTTACTGCTGCTGAGGTTTGTATGTTATGGGGAGCACTCGGTTTTCTTCCACCACCAAAGCAAGGTGAATCAATGACTGATATTTCCACTCAATATTTGCACGAACTATGGACAAGATCGTTTCTTTTAGATTTTGTTGACCTTGGTGGTGATTGTTATTTTAAATTGCACGATTTGGTGTCTGATCTTGCAGTGTTTGTTGGGAAAGGTGAGTTTGAAAGAATAGATCACCGCAATCCAAAAATATCCGAGAATATCCAACATTTGGCATTTGAAGAAAATAATTTTTATGGTGAAACTCTTCTCCCCACTAGTCCCAGAACTGTCATTTTTCTTAATGGAGGGAGCGATAAAGATTTCTTGAAAACATTGTTGTCAAGGTGCAAAGGCTTGAGGTATTTAAACTTAAAAAATTGTGAATACGAGAGTCTACCTCGCTGCATCGGAAAGTTGAAGCATTTAAGATTCCTCAGTCTTGCGAAAAATGAAAAACTTAAGGAACTCCCTTATTCACTTTGCAAACTTCAAAATTTGCAGACTTTGTTTCTTAATGGATGCATAAAGCTACAAATGTTACCCAAAGGAATAGAAAATCTCATCAGTCTTCGTCACTTGGCTATAACCACCACACAAGCCGCTTTTCCCGAAGAAATGATTGCAAAATTGACTTCTTTAGAAAATTTATATATCAGTTATTGTGATAATCTGCGGTCATTATTTGAAGAAGTACAACTCTTCACACTTAAAACTTTCCATTTATGTAATTGTGGAAGTCTAAAGTCGGTGTCATTCCATGCCATCAGAAATTTAGAGGGTTTGGTCATAAAAAACTGCGACAATTTGGATTTGTCATTAGGTCTTGGCAGCCAAATCTCCAATTCAAGGTTAAAGTATGTTGTTCTTACTGATTTGCCACAACTACTCACTTTGCCTCAGTGGTTACAAGGATGTGCAAACACTTTACGTTCCTTACTGA