Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_28700 LG8 13008137 13009409 PREDICTED: transcription factor bHLH106-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   chloroplast, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein dimerization activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/T 13008253 missense_variant p.Leu39Phe
T/A 13008402 intron_variant
G/A 13008479 intron_variant
G/T 13008488 intron_variant
G/A 13008563 intron_variant
G/A 13008590 intron_variant
C/G 13008650 intron_variant
T/C 13008658 intron_variant
A/G,* 13008750 intron_variant
T/G 13008751 intron_variant
T/C 13008854 intron_variant
T/A 13008897 intron_variant
G/C 13009037 missense_variant p.Leu102Phe
G/T 13009040 missense_variant p.Lys103Asn
C/T 13009147 missense_variant p.Thr139Ile
G/A 13009183 missense_variant p.Gly151Asp
C/G 13009226 synonymous_variant p.Leu165Leu
C/G 13009292 synonymous_variant p.Thr187Thr
A/G 13009296 missense_variant p.Lys189Glu
C/A 13009345 missense_variant p.Ser205Tyr
G/A 13009352 synonymous_variant p.Leu207Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_28700.1
MDNSDLFQFLSNTNDSFFPEPASSTMQQSFSASFSSYPLEPFHAPPLQDKALAALRNHKEAEKRRRERINAHLNKLRTLLPCNSKTDKASLLAKVVERLKELKQQMSEITQCETFPSETDEISVLSTSGDESGGDGRVTFKASLCCEDRSGLIPDLVEILKSLHLTTLKAEIATLGGRTRNVLVVATDKDHGVESIHFLHSSLNSLLEHNGTSKRRRVAGPKFIA*


CDS Sequence:
>Vu_28700.1
ATGGATAACTCTGACCTCTTTCAGTTCCTTTCAAACACCAATGATTCTTTCTTCCCTGAACCTGCATCATCAACCATGCAACAAAGCTTCTCTGCTTCCTTTTCTTCTTACCCTTTGGAACCATTTCATGCACCACCTCTTCAAGATAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAATGCCCACCTCAATAAGCTTCGCACTCTCCTTCCTTGTAATTCCAAGACCGACAAGGCTTCACTCTTGGCCAAGGTGGTCGAAAGGTTGAAGGAGTTGAAGCAACAGATGTCTGAAATAACCCAATGCGAAACGTTTCCTTCAGAGACCGACGAGATCTCCGTTCTGTCCACCAGCGGTGACGAGAGTGGTGGTGACGGACGAGTCACATTCAAGGCCTCGTTGTGCTGTGAGGACCGCTCCGGCCTCATCCCTGATCTCGTCGAAATTCTCAAGTCTCTGCACCTCACAACACTCAAAGCCGAAATCGCAACGCTGGGCGGAAGAACCCGCAACGTCCTCGTGGTGGCCACCGACAAAGATCACGGCGTTGAATCGATCCACTTCCTGCACAGTTCGTTGAACTCTCTGCTGGAACACAACGGCACATCCAAACGACGCCGTGTCGCGGGACCAAAGTTCATCGCTTAA


Promoter Sequence:
>Vu_28700::LG8:13006137-13008137(+)
ATGAAAAACTAATTTGAACTAGAAGCATAAAGTAATAGATGTCACAATCAATAAAAATTTGAGCTATCACTATATTTCTAGAGGTGGTTTTGGAGAAAACCTCTGGAAATAGGGACGGTTAAAAGAAACTACAACTATTTTCGATAGTTTTCATAAAATTCCAGCTATTTTCAGCGGTTTTCAAAAATCCTTCAAAATAGCGGCGGTTTTACCAGAACTCCAAGAAATTGTTACGGTTTCATATAAAATCGCCGGTAATGTTTAACGACGCTGCTTTTCTCCGAGACTTTTGTAACCGCGGGAAACAAATTTAGGGGTTAAAATCGCCAGTAATACTATAAATAACTCCTGGAAAAATTATAATTTTTTGTAATGTGACAAGTCCTAACATAATTACTTTCTTCTTTCGAGGTTCGATAAAAATCTAAATGAGAGAATACCTACTCTTACCTAATTACCATCAATCGCTTTCGAAAATTTTTTGAATTTAGATTCAGATTTGGTATTGAATTTGAGTACGTATAGGTTATCTGAATATGAATTCATATGTGTCTATTTTACAAATAGAATGAATGGTAGAAAAAGCTCAAAAGATATATAACAAATGGATAATGCGAGATGAGAAAGCATAGAAAGAAAACAAATTGATATTATAGAAAAACATCGCCCATTCAATATTTTTTAAGTAAAGAAGAACACTTTGTAATATTTTCAATTGTCATTTCCCAAAAGTATATGTTGTCTAAGGTTAGCTAAATATTATCAAATACTTCCCAACACTTTGATAATGTCGGGATAAAAGTAGACCCTTTTGCAATCAAGTGAACCAATTTAAGGCAGACATTTTAATACACCTATAATCATCAGACAACGTAACAATTTAATATTCTCACATACACAAGTAAGTTAGAATTCAAAAGTTAATACAAATATATATATATATATATATATATATATATATATATATATAATAATAATAATAATAATAAATAAAACCCAAAGGATATATATACCTTGAGAAAAAAATATAAATTTTGTACTTATTATATAGAAAGATATCAAATAAAATGATATATTAATTAGTTTTTTCAGATTAAATATTTAGAAAGATTGTTCAAATAAATCAACTAAATCAATTGGATGTACATACGTTGAGAATTTGGTTTCCGCAGAGTGGACTTCGTGAATTGTGTTATCATTTTCTCCTTTCATCTTTTGCTTTTCATTTTTTTCAAAAAGTAAATTGAAAAAATCGTATCTCTTAGTTTTAGAGAACAAATCTCAGTGTGAACAATAAAAAGATCTAGCAGTTTGAACATTAAGGTGGAAATATACTTATCTGAACAAATTATTTTTAAAATGAGTTTTTTTTTTTCGAAAAAAAATCGTATTGGTTAAAACATATATAAAATAAAAATTAAATATGTTTTTAACTTTTAAACTTAAAAATAAAATTAATCTTTATCTATGTACTAAATTATAATAATGCATTTTTGTCTTAAATTTTAAAATAAATAAATATAACCTTTTAATTTAATGATATTAATTTTTTTTACATGTTAAACAATGTATTAAATTAGTATTTAAACTAAAACATAATAAATTATATAAATAATTGAAATATTAACTTGAAATACTATTTAAAATGTAAAAACATTAACATAAATTAAAAAAGTTATATCTATTTTTTAAAAAATTAAAAATTAAATTATTTCAAAATTTGAAAAGTATAAATTATAATTTTACATTTAAGAATTAAAAACATATTTAATCTAAAAATCATCCAAAAATTGCACCGAAAAGTGTGTAAGTTTGAGTATTGGATTTCATTCCACACTTGTGATAGGGCTCTCTCTCTCTCTTAGGGCAGTCAAAAAGCACAACCATAAGTATAAAGACCATTCACAAAACCTGAAACTATAAGATACACACTCTCTCTCACCTTCTCTCATAAATTGACCTCTAACCTACACTATCTGAGATCCAGCATCAGATAGAGA


Gene Sequence:
>Vu_28700(+)
ATGGATAACTCTGACCTCTTTCAGTTCCTTTCAAACACCAATGATTCTTTCTTCCCTGAACCTGCATCATCAACCATGCAACAAAGCTTCTCTGCTTCCTTTTCTTCTTACCCTTTGGAACCATTTCATGCACCACCTCTTCAAGATAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAATGCCCACCTCAATAAGCTTCGCACTCTCCTTCCTTGTAATTCCAAGGTATATATAATCTTTTCATTTCATAGTACTCCATCAATCTTCATTCATATTGAGGGCATTCAAAAACAATTGCAATGACAACAAACCGTGTGAAAGGTTAACAACAATATAGTGTAAAACGTTTTCCTTTTCTTCTCTTTTTTCTCAGAAAGGTTGCATACTTTTTTGACTGACTGCACCTTTTGACTATAATAGTTAGCTCATTTTATATAATATCAGTTCATCTTAATCATAAGAAAGAAAATAAATAGATAAAAACATCTTAATAGTGTATGTATGAATGTAATCATAAGACCCTTTTGAATATTCTTTTATTTTCTATTGTAAAGATTTTTTCTAACATAACCCCACATAAATTATATACAATTTTATCACTCAAAATTAAATCTTTTTTCACAAAGTATGTATTTTTAAAAGTAAAATAAGAAGAAAAATAATTTAATTCTCTCACAATTTTACATTTTACTTTCTGCTCTACACCTTAAACACACTTGTTGTGTAGCCTTTTTCTTGTTTTTCTTCCACCCTAGGATTCTTTCATGCTTTTTTTTGAACCTTCGAGAAAGTCAAATAGCTTTTCAACGATTTTGTTCAGACCGACAAGGCTTCACTCTTGGCCAAGGTGGTCGAAAGGTTGAAGGAGTTGAAGCAACAGATGTCTGAAATAACCCAATGCGAAACGTTTCCTTCAGAGACCGACGAGATCTCCGTTCTGTCCACCAGCGGTGACGAGAGTGGTGGTGACGGACGAGTCACATTCAAGGCCTCGTTGTGCTGTGAGGACCGCTCCGGCCTCATCCCTGATCTCGTCGAAATTCTCAAGTCTCTGCACCTCACAACACTCAAAGCCGAAATCGCAACGCTGGGCGGAAGAACCCGCAACGTCCTCGTGGTGGCCACCGACAAAGATCACGGCGTTGAATCGATCCACTTCCTGCACAGTTCGTTGAACTCTCTGCTGGAACACAACGGCACATCCAAACGACGCCGTGTCGCGGGACCAAAGTTCATCGCTTAA