Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_28666 LG8 12466393 12470760 PREDICTED: AP2-like ethylene-responsive transcription factor TOE3
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 12466403 3_prime_UTR_variant
G/A 12466443 3_prime_UTR_variant
C/G 12466446 3_prime_UTR_variant
T/A 12466574 3_prime_UTR_variant
A/G 12466692 synonymous_variant p.Tyr388Tyr
T/A 12466693 missense_variant p.Tyr388Phe
G/A 12466835 intron_variant
T/C 12466867 intron_variant
T/A 12466876 intron_variant
C/T,* 12466881 intron_variant
G/A,* 12466887 intron_variant
C/A,* 12466888 intron_variant
C/T,A 12466893 intron_variant
A/T 12466894 intron_variant
T/G 12466897 intron_variant
A/T 12466898 intron_variant
C/G 12466922 intron_variant
T/A 12466995 intron_variant
C/T 12466997 intron_variant
G/A 12467042 intron_variant
T/*,G 12467115 intron_variant
A/G 12467137 intron_variant
C/T 12467139 intron_variant
A/C 12467171 intron_variant
C/T 12467255 intron_variant
A/G 12467284 intron_variant
A/G 12467308 intron_variant
T/G 12467374 intron_variant
T/A 12467392 intron_variant
A/C 12467417 intron_variant
C/T 12467444 intron_variant
A/C 12467480 intron_variant
A/T 12467622 intron_variant
C/G 12467631 intron_variant
C/G 12467857 intron_variant
A/G 12467882 intron_variant
C/T 12468000 missense_variant p.Glu273Lys
C/A 12468021 intron_variant
T/C 12468031 intron_variant
C/A 12468059 intron_variant
T/A 12468062 intron_variant
T/A 12468065 intron_variant
G/C 12468069 intron_variant
A/G 12468119 intron_variant
T/C 12468137 intron_variant
G/A 12468159 intron_variant
A/T 12468171 intron_variant
A/G 12468206 intron_variant
C/T 12468214 intron_variant
A/C 12468244 intron_variant
T/C 12468249 intron_variant
T/A 12468438 intron_variant
T/C 12468488 intron_variant
T/C 12468514 intron_variant
T/C 12468552 intron_variant
G/A 12468660 intron_variant
T/A 12468671 intron_variant
T/A 12468672 intron_variant
T/C 12468714 intron_variant
A/G 12468730 intron_variant
T/C 12468951 intron_variant
C/T 12469161 intron_variant
G/A 12469164 intron_variant
C/T 12469274 intron_variant
G/C 12469364 splice_region_variant&intron_variant
G/A 12469416 intron_variant
A/G 12469418 intron_variant
C/A 12469476 intron_variant
T/A 12469514 intron_variant
T/G 12469538 intron_variant
G/A 12469576 intron_variant
T/G 12469590 intron_variant
C/T 12469607 intron_variant
T/C 12469631 intron_variant
A/C 12469637 intron_variant
T/C 12469640 intron_variant
C/T 12469660 intron_variant
A/T 12469734 intron_variant
C/T 12469753 intron_variant
C/A 12470107 stop_gained p.Gly84*
T/A 12470447 5_prime_UTR_variant
C/T 12470455 5_prime_UTR_variant
G/A 12470609 intron_variant
C/G 12470628 intron_variant
G/T 12470636 intron_variant
T/C 12470640 intron_variant
A/T 12470641 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_28666.1
MAMFDLNVDINHADADSGSSCAQKEAKLQSFPTEISDSRTSNSSVWNPADEDSSNNSSPLIFDILKKERGGSEFNMEQNMAQKGEMATRTLFPVTSSDKGGRVPDFKSGLWGNTQLLKPSFPESDEQNELRTLQQKLPHVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGMDADINFSLRDYEEDLKQMRGLSKEEFVLVLRRQINGISRRNATYKSALALHKGGQGEPSMGPFLSKTFYPESSIKYDEEKVESSFRAFSYKEKIIGNSSIAGTCHDLDLRLGISPCSKKLKNCDYGGDYSFGCVACKIPQEIGTMCEEKSMVERMRSVPLQKFCSNGSIGSRALQSNAASSGFVTYQLCQHNSSLTLQGCGVTLVDQIKPL*


CDS Sequence:
>Vu_28666.1
ATGGCTATGTTTGATCTCAATGTTGACATCAACCATGCTGATGCAGATTCTGGCTCAAGCTGTGCTCAAAAGGAGGCGAAACTGCAGAGTTTTCCGACTGAAATCTCAGATTCCAGAACCTCCAACTCCTCTGTGTGGAATCCTGCAGATGAAGATTCCTCAAACAATTCCTCTCCCCTGATTTTTGACATACTGAAGAAAGAGAGGGGTGGCTCAGAGTTCAACATGGAGCAAAACATGGCACAGAAGGGAGAGATGGCGACAAGGACCCTTTTCCCCGTGACTTCTTCTGATAAAGGAGGAAGAGTTCCTGATTTCAAATCTGGGTTGTGGGGTAATACTCAATTGTTGAAACCGTCCTTTCCTGAATCTGATGAACAGAATGAACTGAGAACCTTACAGCAGAAGCTACCACATGTGAGGAAAAACAGGAGAGGACCAAGGTCTCGCAGTTCTCAATACCGAGGTGTCACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATTTGGGATTGTGGGAAGCAGGTCTATCTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGAGCGTACGATAGGGCTGCTATTAAGTTTCGTGGAATGGATGCTGATATAAACTTTAGTCTGAGAGATTATGAGGAGGATTTGAAGCAGATGAGAGGTTTGAGTAAGGAAGAGTTTGTGCTTGTTCTTCGTCGACAAATCAATGGAATCTCGAGGAGAAACGCAACTTACAAAAGTGCATTAGCTCTTCACAAAGGTGGTCAAGGAGAGCCAAGTATGGGACCATTTCTTAGCAAGACATTTTATCCCGAGTCTTCCATCAAGTATGATGAAGAAAAAGTGGAGAGCAGTTTTAGAGCTTTTTCCTATAAGGAAAAAATAATTGGAAATTCCAGTATAGCAGGCACTTGCCATGATCTTGATTTGAGGCTGGGGATTTCTCCATGTTCTAAAAAGTTGAAGAATTGTGATTATGGTGGAGACTATTCCTTTGGATGTGTGGCTTGTAAGATACCCCAGGAGATAGGAACAATGTGTGAGGAGAAGAGCATGGTGGAGAGAATGAGAAGTGTTCCTCTGCAAAAGTTTTGCAGCAATGGCAGCATTGGCTCAAGGGCTTTGCAATCAAATGCAGCATCATCAGGATTCGTCACATATCAATTGTGCCAACACAACTCATCATTAACTCTCCAAGGTTGTGGTGTCACACTAGTAGATCAAATCAAACCACTATAA


Promoter Sequence:
>Vu_28666::LG8:12470760-12472760(-)
AAAAATTTTATGAATAAATTTATTCCTACATATCCAAGGAAAAAAAACATGGACATAAATTGTAATGAAAAAGAAAAGATTTTGATTCTGGTAAATCTTATCAACATGCATTTTAGTTCTTATATTTTTACATTGATGCATTATTAAGCTACCTTTTAAAAAAATAAATGGTTTTAGTTATTCTTTTGATTCAACACTTAGATTGTATTTCGATGTGATTCAAAACTTAAATACGAATTAGGCAAGTATTAAACTAGATTAGCCTTATCTGTTTTACTTTATTTTTATTTATAAATAGATTCAGTTAAATTGTAAACACTTTATGAATTGAAATATTTTTAATTAATCTTATACCAAAAATTTCAATTTTATTAAATATTACATTTTACTTTTAAACATTTTTCTATTCAATCTTTTAAGCATTTTACTTAACATTAAATATTATGTCACCTTTGTTTCTCTCCTTGTATGTTTACCTTATCTATCGACTTCTTCATTCTCATTTTAATTTCCATCAACTCATAAAAAAAATAATAATAGAAGTGGCTATTTCCAACAAATTAAAAAAGATATTCAAAAGGATATTTAAAAAAGTTAAAAATATCTTAAACATTTAGTATTAGTCTTGTTGGAAATTCAATTACGAGGAAAGTTGAATTTTTTTTAAGGAATATTTATTGTAAGATTTTTGGGTAGAAGTGACATTATTTTTTTATGTAGATTTGATTAAGCTTTTATTAGTATTATATCTTCTTAGTAAATATGTTTGAAAGATCCATTGATATTAAAGTTGATAATTTGTTTTGGTGACTAATTTAACTTAAATAAATACAATATAAATAAAAAATCATAAATTTGAGAATTTCTTGTATTTTTTGAAAGGAGAATGAGACAAACATATTTCGTTATTATAATATAACAACAATATAAAAAGGTTATAATTGATGTATTTTGATTGAAATTATTGTCGTGCAAGTAAAAGTAAACGCGAAAGAGATTGAATCTTGAAAAAAAAATGGTTATGAATTCAAATATGAAATTAAATCTCATATTAAATAAATATAAAAAATTAAAGACGTTATAAATTATATTTTTTTACAAAGTTATTATATTAAAGTTGAGTCAGAATCGATGTCATATTTTTTGTTTTTTTTTTTTAAGTTTGACCCACGTCACATTAATAATGTTTTGTCTGATTAGTATTTTATTTATGGAATAAATATTATTTAGAAGAGACATTTTTTAATAAAAAAAAAGAAATAAAAATGTGTAGATTTATAGTGTCCTTAAAATAGAAGAAATGTGTTTATGGAGGGATATAGAATCCGGGAGAGGATGCACAGGGCCAATTATTAAAGGCTGCGTATGGAGAAAAAGGTTGAAAGAATTAAGTGTGGTGATAGCCCACTCTATCTGTCTCTTTACTCATACTGCCTGCCCTATAATTATATCTATTATATCACCTTTCAATGTGTGACTCACAGGAGTTATATCCCTTTCCGGTTACCTTATGGACCAAAATCAAAACACTCTATTCGCCCATTTGTGGTCCTTTTTTTCATTCATTGCCTTTTCCTCTATACCATTTCTCACATGTCAAAACCATTTTTCCATCCCAAAACACAAATATCTACCTTCATTTTCTTTTATGCCATATTTCCTTATTTTTAGAACCACTTAACATCATAATTCCCTCTTTTCTCACTACACTTTCTCATTAAGAAAATCCCATATTAGTTAATTTAATTTAGTCCTCTTTTCGGACATACGACAAATACTTTCTATTTTATATGCTCTAGAGTTATTCTATATTTAGTATTATTATGTCTTTCCCCTCCTCCTAAGCCCTTTTAGCTCTTTTCAAATCTTATCTTCTTGTCTTTAAGCTGGTTCAAAGCATATTTTTAGCATTTTTTTTTATGTATGGGTAAAACCTTAAATTGAAAGTTAAATATATTCAATATCTTAAATGTAAACAAAAAGCTAATGTTGTGTCTGCT


Gene Sequence:
>Vu_28666(-)
GAGTCTGCCCAAAAGATAAGAGCATGTGCCTCAGTTCTCACAGTTAGCATTTCTTTTCAATATCTTTGCATTTCAGGTAAATCACATCTCTGAGTCAGTCTCGACCGGTTCTTGTGCTTTATTTCCTTTTATGTTGGAACAAGCTCTTGTTCTTTATCCAATCTTCTCTCTCGTATCTTCCAGTAACCTTAATTTCAGTCTTTCTGTTGTTCTGTCAGATACTTTTTTCTACGCTCACCAATTCACTCTTCTATATTCTTCTTTTCCTTTAAAGGGTCCTCTCTCTCGTACCCAGTTTGAGTTTCGTTGTTTGATTTCACTGCACTGGGAAGTACATGAGACTCTTCCAGAAGTGTGAGATTTGAAGACCAGAATCTGGTGAAAGAAGAGAGCTTTTCCGAGACATGGCTATGTTTGATCTCAATGTTGACATCAACCATGCTGATGCAGATTCTGGCTCAAGCTGTGCTCAAAAGGAGGCGAAACTGCAGAGTTTTCCGACTGAAATCTCAGATTCCAGAACCTCCAACTCCTCTGTGTGGAATCCTGCAGATGAAGATTCCTCAAACAATTCCTCTCCCCTGATTTTTGACATACTGAAGAAAGAGAGGGGTGGCTCAGAGTTCAACATGGAGCAAAACATGGCACAGAAGGGAGAGATGGCGACAAGGACCCTTTTCCCCGTGACTTCTTCTGATAAAGGAGGAAGAGTTCCTGATTTCAAATCTGGGTTGTGGGGTAATACTCAATTGTTGAAACCGTCCTTTCCTGAATCTGATGAACAGAATGAACTGAGAACCTTACAGCAGAAGCTACCACATGTGAGGAAAAACAGGAGAGGACCAAGGTCTCGCAGTTCTCAATACCGAGGTGTCACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATTTGGTATGGTTTATGATGTTGAATTTCTACTCCAAGATGTTACAGTTTCAATATATTTTCCTGATAGATCACAAAAACTGATATGCAGCTATTGGTGGATGTAGTTAAGGTTTTTAAGTTATAATCTATAATTACCAAGGTTTTGAATTGTTGTCACGATTACGATTTTGATCCGATCCATAACATAGTAGAAAGTTGTGAACAATTATTTTTGTTATTGCAGTTATAATTGTGGTAACTGTGTGGTGGCAGAGACCAAAAAAAGCCTTGACATTGCGGCTCCAATTGGTTGTAGAAAGTTGCTTAAAAATTTGTGTGATTATAGTTGATGACATGGTTTCATAAATGTAGTTGCATTTGCCTATAATTTTGTAGCTACCATTGATCGACAACTTAAACCATGAAAGCAGTAATCTTAAATATTGTCCCTGCTGTCATGAACTGTTTGGTGGTCTGGACTAACATAATTGAATATTTGCTCGACTGCAGGGATTGTGGGAAGCAGGTCTATCTGGGTAAGTGGATGTTTGATTTGGTTGATGTTTTTCCTTAGTTGGAAGCTATTTCTGTGGTGATTTATTTTCAAGTATGAGTATTTGGTTCACTGAATTGGCCTAATTTGATGTTTGTTAGGTGGATTTGACACTGCTCAAGCTGCTGCAAGGTAAGAACTGCCCTTTGACCGAGCCAAAACCACTTTTTATGGTTTAGTTATCTGTAACACTTGTTGACAAAATTGATATTGTTATCTGCACAGAGCGTACGATAGGGCTGCTATTAAGTTTCGTGGAATGGATGCTGATATAAACTTTAGTCTGAGAGATTATGAGGAGGATTTGAAGCAGGTATTGAACGAAAAGCATGGTAGGCCATCAGTTTTATTTGAGTTTTCTGTCAGTTTAATTCATGATTTGATTGAGTTGCAGATGAGAGGTTTGAGTAAGGAAGAGTTTGTGCTTGTTCTTCGTCGACAAATCAATGGAATCTCGAGGAGAAACGCAACTTACAAAAGTGCATTAGCTCTTCACAAAGGTGGTCAAGGAGAGCCAAGTATGGGACCATTTCTTAGCAAGACGTGAGAACTTCTATTTCAACCATTATTATAACTTATTCTAATTTTACTCATCTTTTAAACAATGTTTCATGTATCCTTGTTGTTATTTAATTAAAGGCTTAATATATTTATTCATACAAATTTTGAATACAGACACTTAAAAACATATTTAAACTTTAGTTGATTATATTGTTAGTTTCTCATCTTAGTTAATGAAGTTTTATATACAAAATATGTGGAAATTATCAAACACTATTATCCAAAAGTTGTTGTTATATAAAAATGAAGTACAGCTACAATTACTTATTTTATATCCTACCATGATAAGGTTTCATGAATTTGTGTGCCGCTGACAAGGTTATCAAAAAGGAAAGTCTGCAATAGTCGGTTATTGGGATACTGAATTTATTGTCCTTGTATGAATGAAATTGTGTATATTAGTCCTGTTCTCTTGAGTGGATTTGAGGGAATGGATTTGAGGGGATTTGAGAGGATTTGAAAATAATTTTTTTTATCGTTTTTAAGAGCGAATTTGGAGGTAAATAAGAGTGAATTTGAAAATAAAATTTGTGAGAATTAGTATAGAATTGTATTGACATGACATATTAAAAAAAATTATTTTTAAATTCACTCTCATTTACCTCCAAATTTGCTCAAAAAAACGATAAAAAAATTATCTTCAAATCCTCTCAAATCCCCTCAAATCCATTCCCTCAAATCCACTCAAGAGAACAGGAAGAGTTTAATCGAAAAGGGTTCTTCATTTTGTATTGTTTTGTGCAGATTTTATCCCGAGTCTTCCATCAAGTATGATGAAGAAAAAGTGGAGAGCAGTTTTAGAGCTTTTTCCTATAAGGAAAAAATAATTGGAAATTCCAGTATAGCAGGTTTTATATGATGTGTTTAATTTATTTTTCTGCTCTGTTTCTTTTCTATGTGTTCTTGAGAACATTGACTGATGAAACTTGACTTTTAATTTAAGCAGGCACTTGCCATGATCTTGATTTGAGGCTGGGGATTTCTCCATGTTCTAAAAAGTTGAAGAATTGTGATTATGGTGGAGACTATTCCTTTGGATGTGTGGCTTGTAAGATACCCCAGGAGATAGGAACAATGGTACTTCTATTTGCTTTCCTTCTTCTTGCATTATTTTTTTTTAGCAGAAATGATATTTTGAGAAACATACATTCATTTTACACTATCATTCTTTATTTTTATTTATTTTTTTCTTCTAAAATACAAAAGTTTCTTCTTTAATGATTATTTTACTTTTTTAATAAGTATTAAATGAATATAAAATGTTTTATAAAGAGTGTCAAATGAATATAATAAATTTGTACATTTTTAGTGTGTTATACTCACTTGAAAATCAACAATGTATTTGCTATTAATATCTTTTTAAATGTATGTGTTGGGATTAATCAATTTTATGGTGAAATAAATTTTGTTAGTTAAGTACAATACTTAAATTTTAAGTATTTCTAATACAATCTTTATTAAGATATTTTGTTTTATCGAGTATTGAATTTTTTTCTTAAGTTTTTTAAATTTGTTATCTTATTTACCATCTTATTTAATAATTTTATGATTAATATAAAATAATATCATAGTTAATATCAAATTATTAATATGATAATCCATTATTATCTAACACGTTTTTAATAAAAATAATAAAAATAATAAAAATTACTTATCCTTTTGTTTTAGTTTTAATATTATTTTACATTAACCCAAAATCTTTCATTTTTTATCATTAAATAAGTATCATTTGTTAAAAGAAAAATTAAATGAAAAAAGAAACACTCAAGAGTCAATTAAAAATGGTCAATTTTGTAAAATACTTAAAAGATTTAGACATTTCTTTGATTGAAGAATTAGATTGAAAGTTGAAGTTATATTTGATTTGCTATAAGTTTAAAAAGTCTTAGTAAGTGTAGCAAGTAGAATGGGATTTGTAACAGTGATAAATGATGTGTTAGTGTGAGGAGAAGAGCATGGTGGAGAGAATGAGAAGTGTTCCTCTGCAAAAGTTTTGCAGCAATGGCAGCATTGGCTCAAGGGCTTTGCAATCAAATGCAGCATCATCAGGATTCGTCACATATCAATTGTGCCAACACAACTCATCATTAACTCTCCAAGGTTGTGGTGTCACACTAGTAGATCAAATCAAACCACTATAATATCTACCATTTCCTTCTTTCTGCAACATTTTATCAAACAGCATTAATGCATCATAACCACACTCTGTAATATTATATTGCTTTCCTCATATATCATTGTGTTTAATAATGTTGCCAAGCATTCATTGCAATGCAAACCAGTAACTTGTATTCATCATTGTGATTTAGTACACTCTCTTGAACTATGTAAATATTTCTTTATAAAATGCAACTGCTTTGTC