Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_28643 LG8 12065923 12067457 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C,T 12065925 missense_variant&splice_region_variant p.Val338Gly
T/C 12065948 synonymous_variant p.Lys330Lys
T/C 12065950 missense_variant p.Lys330Glu
A/G 12065958 missense_variant p.Val327Ala
C/T 12065961 missense_variant p.Arg326Lys
A/G 12065968 missense_variant p.Ser324Pro
G/C 12065977 missense_variant p.Gln321Glu
C/G,A 12065978 synonymous_variant p.Leu320Leu
A/G 12065979 missense_variant p.Leu320Pro
G/C 12065980 missense_variant p.Leu320Val
T/A 12065982 missense_variant p.Lys319Met
T/C 12066002 synonymous_variant p.Thr312Thr
G/A 12066018 missense_variant p.Ser307Phe
G/A 12066024 missense_variant p.Ser305Phe
C/G,T 12066032 missense_variant p.Gln302His
T/G,C 12066045 missense_variant p.Gln298Arg
A/G,C 12066050 missense_variant p.Cys296Trp
C/G 12066051 missense_variant p.Cys296Ser
G/T 12066054 missense_variant p.Ala295Glu
C/T 12066060 missense_variant p.Arg293Lys
G/A 12066066 missense_variant p.Thr291Ile
G/A 12066077 synonymous_variant p.Asn287Asn
T/A 12066078 missense_variant p.Asn287Ile
G/A 12066081 missense_variant p.Ala286Val
G/A 12066091 missense_variant p.Leu283Phe
A/C 12066121 intron_variant
T/C,* 12066129 intron_variant
T/A 12066131 intron_variant
G/A 12066152 intron_variant
A/C 12066164 intron_variant
T/G 12066177 intron_variant
C/A 12066193 intron_variant
A/T 12066217 intron_variant
G/A 12066228 intron_variant
T/C 12066238 missense_variant&splice_region_variant p.Arg279Gly
C/A 12066250 stop_gained p.Glu275*
T/C 12066271 missense_variant p.Lys268Glu
C/A 12066280 stop_gained p.Glu265*
C/G,A 12066282 missense_variant p.Arg264Leu
G/C 12066283 missense_variant p.Arg264Gly
T/C,G 12066284 missense_variant p.Ile263Met
A/T 12066285 missense_variant p.Ile263Lys
C/T,A 12066291 stop_lost p.Ter261Leuext*?
T/A 12066337 intron_variant
C/T 12066339 intron_variant
G/C 12066341 intron_variant
G/A 12066356 intron_variant
T/A 12066370 intron_variant
G/A 12066399 intron_variant
A/G 12066400 intron_variant
G/A 12066401 splice_region_variant&intron_variant
A/C 12066425 missense_variant p.Leu245Val
C/T 12066426 synonymous_variant p.Glu244Glu
A/T 12066434 missense_variant p.Cys242Ser
T/A 12066439 stop_lost p.Ter240Leuext*?
A/T 12066440 stop_lost p.Ter240Lysext*?
C/A 12066442 missense_variant p.Arg239Ile
C/T 12066449 missense_variant p.Val237Ile
C/G 12066455 missense_variant p.Val235Leu
A/G 12066469 missense_variant p.Ile230Thr
G/A,C 12066474 missense_variant p.His228Gln
C/T 12066481 missense_variant p.Cys226Tyr
T/G 12066497 missense_variant p.Asn221His
T/C 12066502 missense_variant p.Gln219Arg
G/A,C 12066506 missense_variant p.Leu218Phe
T/C,G 12066513 synonymous_variant p.Leu215Leu
A/G,C 12066514 missense_variant p.Leu215Arg
G/T 12066515 missense_variant p.Leu215Ile
C/G 12066521 missense_variant p.Val213Leu
T/C 12066522 synonymous_variant p.Ser212Ser
G/C 12066523 stop_gained p.Ser212*
G/C 12066526 missense_variant p.Pro211Arg
C/T 12066540 synonymous_variant p.Glu206Glu
C/T 12066542 missense_variant p.Glu206Lys
G/C 12066551 missense_variant p.Leu203Val
C/A 12066581 intron_variant
C/T 12066605 intron_variant
A/T 12066621 splice_region_variant&intron_variant
A/G 12066642 missense_variant p.Ser196Pro
C/T 12066656 stop_retained_variant p.Ter191Ter
C/T 12066661 stop_gained p.Trp189*
C/A 12066664 synonymous_variant p.Gly188Gly
C/T,A 12066665 missense_variant p.Gly188Val
T/C 12066694 synonymous_variant p.Gly178Gly
A/T 12066699 stop_lost p.Ter177Argext*?
G/T 12066711 missense_variant p.Leu173Ile
A/T 12066720 stop_lost p.Ter170Lysext*?
G/C,T 12066727 synonymous_variant p.Pro167Pro
G/A 12066728 missense_variant p.Pro167Leu
C/A 12066733 missense_variant p.Leu165Phe
A/C 12066734 missense_variant p.Leu165Trp
C/G 12066743 stop_lost p.Ter162Serext*?
A/G 12066754 synonymous_variant p.Ser158Ser
A/T 12066759 stop_lost p.Ter157Lysext*?
G/T 12066761 stop_gained p.Ser156*
G/C 12066767 missense_variant p.Ala154Gly
C/G 12066772 synonymous_variant p.Thr152Thr
T/C 12066774 missense_variant p.Thr152Ala
A/C 12066786 stop_lost p.Ter148Glyext*?
T/C 12066795 splice_region_variant&intron_variant
A/C 12066819 intron_variant
A/C 12066821 intron_variant
A/G 12066825 intron_variant
A/G,* 12066829 intron_variant
T/A,* 12066830 intron_variant
T/C 12066835 intron_variant
A/C,T 12066842 intron_variant
A/G,* 12066855 intron_variant
T/A 12066872 intron_variant
C/T 12066874 intron_variant
A/G 12066882 intron_variant
T/C 12066907 intron_variant
G/A 12066926 missense_variant p.Thr143Ile
T/A 12066935 missense_variant p.Tyr140Phe
T/*,C 12066944 stop_retained_variant p.Ter137Ter
A/T 12066948 stop_lost p.Ter136Lysext*?
T/G,C 12066949 stop_lost p.Ter135Trpext*?
A/C 12066951 stop_lost p.Ter135Glyext*?
A/C 12066959 stop_gained p.Leu132*
T/G 12066967 stop_lost p.Ter129Tyrext*?
A/T 12066970 synonymous_variant p.Ser128Ser
A/T 12067003 missense_variant p.His117Gln
G/T 12067022 missense_variant p.Ser111Tyr
T/A 12067024 synonymous_variant p.Leu110Leu
A/C 12067029 stop_lost p.Ter109Gluext*?
G/A 12067043 missense_variant p.Pro104Leu
G/T 12067120 intron_variant
G/A 12067139 intron_variant
C/T 12067159 splice_region_variant&intron_variant
A/G 12067161 splice_region_variant&intron_variant
G/T 12067168 missense_variant&splice_region_variant p.Ala97Glu
G/A 12067182 synonymous_variant p.Gly92Gly
C/G 12067187 missense_variant p.Val91Leu
G/A 12067189 missense_variant p.Thr90Ile
G/T 12067195 missense_variant p.Ser88Tyr
C/G 12067200 missense_variant p.Leu86Phe
A/T 12067202 missense_variant p.Leu86Met
G/A 12067204 missense_variant p.Ser85Phe
T/A 12067211 missense_variant p.Asn83Tyr
A/G 12067239 synonymous_variant p.Ser73Ser
T/C 12067261 missense_variant p.Asp66Gly
T/G 12067264 missense_variant p.Tyr65Ser
C/G,T 12067269 missense_variant p.Leu63Phe
G/A,* 12067274 missense_variant p.Leu62Phe
C/G 12067280 missense_variant p.Asp60His
G/C 12067286 missense_variant p.Gln58Glu
C/T 12067296 synonymous_variant p.Gly54Gly
G/A 12067306 missense_variant p.Pro51Leu
G/C 12067316 missense_variant p.His48Asp
T/A 12067345 missense_variant p.Asp38Val
C/G 12067346 missense_variant p.Asp38His
C/T 12067349 missense_variant p.Glu37Lys
C/G,T 12067351 missense_variant p.Arg36Pro
G/C 12067352 missense_variant p.Arg36Gly
T/A,G 12067354 missense_variant p.Tyr35Phe
A/G 12067355 missense_variant p.Tyr35His
A/G 12067358 missense_variant p.Cys34Arg
T/G,A 12067359 synonymous_variant p.Leu33Leu
A/T 12067367 missense_variant p.Leu31Ile
C/G 12067376 missense_variant p.Glu28Gln
C/T 12067387 missense_variant p.Arg24Lys
A/T 12067437 stop_gained p.Cys7*
C/T 12067440 synonymous_variant p.Val6Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_28643.1
MKSLRVCFLIFLLLEALWCEGCWREEREALLDLCYREDGDCCEWEGVHCNPSTGRVAQLDLLLIYDQQYINYSDFSVFKDLKNLSLSSNTVGCVGDAELPNLQLLSFNYNYLDNATTILLSCLDGLPSLKSLYLSDNKFSTSSLNHVFESVSRKLRRNLEVLDISWNPLTNEILPSLEEFTSLKELYLGGTELDSDLHFDGLCSTLRNLEVLQLSYNNFNQTDIGSALTGFSSLKSLYLDNSALSWRSIYNISKLSSLEFLDLYGNNLNESGSMLRPFKDNQTFKWPTNLRHLDLRVNSLSNRFVPYLRGLPHLQFLDLSCNQFQGELDINGQYFINL*


CDS Sequence:
>Vu_28643.1
ATGAAGAGTTTGAGAGTGTGTTTCCTCATTTTCCTTTTATTGGAAGCCCTGTGGTGTGAAGGATGTTGGAGGGAAGAGAGAGAAGCACTTTTAGACCTATGTTACCGTGAAGACGGTGATTGCTGTGAATGGGAAGGAGTGCACTGCAATCCCTCCACGGGGAGAGTGGCGCAACTCGATCTTCTTTTGATCTATGACCAACAATATATAAATTACTCTGATTTTTCTGTCTTCAAAGATTTGAAGAACCTCTCCTTGTCATCTAATACAGTTGGCTGTGTTGGGGATGCAGAGTTGCCAAATCTCCAGCTCCTTAGCTTCAATTATAACTATCTGGATAATGCTACCACCATTCTTCTATCTTGTTTGGATGGACTTCCATCTCTTAAGTCTCTTTATTTAAGTGATAATAAGTTCAGTACATCTTCACTAAACCACGTTTTTGAAAGTGTGTCACGAAAGCTGCGTCGTAATCTGGAGGTCCTTGACATAAGTTGGAACCCTTTGACTAATGAGATCTTGCCATCCCTTGAGGAATTCACATCTTTAAAGGAACTGTATTTGGGTGGAACTGAATTGGACTCGGATCTTCACTTTGACGGTTTATGCTCAACATTGAGGAATCTTGAGGTCCTTCAGTTGTCCTATAACAACTTCAACCAAACTGATATTGGCTCTGCTCTCACTGGATTCTCATCCCTCAAGTCTTTGTATTTAGATAACAGTGCATTGAGTTGGAGATCGATTTACAATATTTCAAAATTGAGTTCTTTGGAGTTCCTTGACTTATACGGGAACAACTTAAACGAGTCTGGCAGTATGTTGAGGCCTTTCAAAGATAATCAGACCTTTAAATGGCCAACCAATTTACGACATTTAGACCTGCGTGTAAACAGTTTGAGCAACAGATTTGTTCCATATCTGAGGGGTCTTCCACATCTTCAGTTTCTTGATTTAAGCTGCAATCAATTTCAAGGAGAGTTAGATATAAACGGTCAGTATTTTATAAATTTGTAA


Promoter Sequence:
>Vu_28643::LG8:12067457-12069457(-)
TTTTATTTAATAGTTTTGTACCTTTTTATAATGTAAATGTAGTGTTATTTGGGTAAATAAAATATAGTGTTATTTGGATAAATGTAGTGTTACATCAATATATTTGTTATAACTTTTATACTTATATTCATTACTTTGATAGGGAATTTTGCCAACAATACAAGAATTTCTATCTGGTGTGGACCAAAGGTTGAGGGAGGTTGGAAAGAGGGCTTTTGGTGGAAAACAAAGAGGGGGAGAGGGAAATCAAGTTCTAATTTATAAACTCGAAGAACTTATTGAAAACCATCGTCTGTAGGTAATGACTGATGACGATTACTAATGGTATATTGAGGGATATATCCACCAATAAGTAACAAAATCCATTACCAACAATATTTGATCTGTGAGTAAATATGTATTTTGCATTTGTCATCAATAATAATCTGTCGATAATATACTAGTGGAAGTTATAGATAAATGAAGGAACTATAAATAAATAGTTAGAGGATAATGTTTAGGAAAAAAAAATTATATAAATCAGTAAATTGATAAATATAACTTTTCATGTATGCATAACCATGATTATAGGTATTGTAGCTGTGTTAAAGCTATCTTCATTTTTAATAGTTTATTCTTACATTTGTTATCTTAAGTCCTAATTTTACAGAGATTTAAATCATCATAAATAGTGTACTTGGTAACTAATACATATAGTGGTTGGTATCTTTTTTTGTAATCAATTCATTTTATCAATGGAACTGTTTGAACAATATATTTAAAGAAGAATTAGACATATAATTTGTAAGTTTGAATCAGCTAACTTAAAATTACTTTTTCTATTTTAAACCGTTAGTCTAGTTTTATGTAAAAAAAAATAATATAAAGCTTCTTTCAATACTAGAATTTTATATATATATATATATATATATATATATATATATATATATATTCACTTTTTAAAATTATAAATAAATATTTATGACAATTCAATTTAATACTTATAAACTTAAAAATATTGATTATTTATTTTAATATAATATATATTTATTAAGATAAATATACATAAATAATTTATTTAAGTAAATTCATTTTATCAATTGAACTGTTTGAACAATTTATTTAAGGAGGTAAGTTTGAGCGAACTAACTTAAAGTTACTTTTTCTTGTTTGTATTGCTTTATGTTAAATCGTTAGTCTAGTTTTATGTGAAATAAAATTAAAAATTTCTTTCAATACTAAAATTATAAATAAATTTTTATGATAATTCAATTTAATACTTATTCATAAACTTAAAAATATTTATTATTTATTTTAATTTTTTAATATAATATACATTTATTAATAAATACTAACTCGTCCTAGGCACGAGTTTAAAATTAACAATAGAATAAAATATTATAACACGGCAATTTGAGGTGTGACCTGAAGTCTAAACCATTTGTCACGGACACACCCGTAGTCAAACACGCGTTTGTTACTTTTGGATGAAATGATTAAAGAATTAAATAACATTATCACGTTTATAAAAGAATATATTTAATTTGGTATAAAAAACCATACAAACATTATTAAAATGTACTTCTTACTTAAAATAAAAACACATAAAACATAATCATCATTAAATAATGAAAATTTACTACACAAAAAAGAACACTAGAAACTATTAGAATTTTATTTGAAACTAAACAAGGTTAAACGAAATGGAGAAGTAATTTTCAAACGAGAAGAAAAATTGTAAAGCTAATTATTTATTAAGACACGTAATATCTGACTCTATCCATATGATGTGATATGCTAAGGCACAAAAATTTAAATTTAGTTCAAAACCAATTAAATATAAATAATAATTGGGAAAAGAATATTTTCTTGGTGGAGCCAACAGAAGTTATGGTCTTCCCTGTTGACCTGAAGTCAAGTGTCTTCATTTACACGGCTTGACAAAATAATGAAATAAGGAAATTTTCCTTTTATTTAAGGGATAGGTTGAGACGAAATCCTTGAAGTGGATGAAAAAGAAA


Gene Sequence:
>Vu_28643(-)
ATGAAGAGTTTGAGAGTGTGTTTCCTCATTTTCCTTTTATTGGAAGCCCTGTGGTGTGAAGGATGTTGGAGGGAAGAGAGAGAAGCACTTTTAGACCTATGTTACCGTGAAGACGGTGATTGCTGTGAATGGGAAGGAGTGCACTGCAATCCCTCCACGGGGAGAGTGGCGCAACTCGATCTTCTTTTGATCTATGACCAACAATATATAAATTACTCTGATTTTTCTGTCTTCAAAGATTTGAAGAACCTCTCCTTGTCATCTAATACAGTTGGCTGTGTTGGGGATGCAGGTATTCGTTCCTATAATTGCTCTTTGCTTATTCAAAACTGCAAATCTGTGTTATGTTTTATGGAATACTCATTATTTCAACTTTCTTTTACATACTTTCCAGAGTTGCCAAATCTCCAGCTCCTTAGCTTCAATTATAACTATCTGGATAATGCTACCACCATTCTTCTATCTTGTTTGGATGGACTTCCATCTCTTAAGTCTCTTTATTTAAGTGATAATAAGTTCAGTACATCTTCACTAAACCACGGTGAGTACCAATTTTTAATTTATTTAAAGAAAAATGATAACAGTATTATTTTTTATTATCATGAAGATCTTCTATTTTTTTATACTATATATTTTTTTTTCACATTTGTTGGTGCATATATATAAGTTTTTGAAAGTGTGTCACGAAAGCTGCGTCGTAATCTGGAGGTCCTTGACATAAGTTGGAACCCTTTGACTAATGAGATCTTGCCATCCCTTGAGGAATTCACATCTTTAAAGGAACTGTATTTGGGTGGAACTGAATTGGACTCGGATCTTCACTTTGACGGTAACTTTTCCACTTCATTAATAGAGCTGAGTAGTTGTTAATTAATGGAGGATATATTCCTTGCTTGCAGGTTTATGCTCAACATTGAGGAATCTTGAGGTCCTTCAGTTGTCCTATAACAACTTCAACCAAACTGATATTGGCTCTGCTCTCACTGGATTCTCATCCCTCAAGTCTTTGTATTTAGATAACAGTGCATTGAGTTGGAGATCGATTTACAGTACGGCCTCATATATACTTTCCATATTATAAATCTTGATTACAAAATATATCCAGCTGTCTATAATCGGGATATGTATTTTTAGATATTTCAAAATTGAGTTCTTTGGAGTTCCTTGACTTATACGGGAACAACTTAAACGAGTCTGGCAGTATGTTGAGGCCTTTCAAAGGTTAGTTACGATTAACATTTGATAGCATTTTATATTTAAACAAGATATTACTCCCTTTCAACATATGGATATTCATCTCCTTATCATTTAATTAATTAATATGATAAATTGATGTTTTCAATTTTGTTTTATCAGATAATCAGACCTTTAAATGGCCAACCAATTTACGACATTTAGACCTGCGTGTAAACAGTTTGAGCAACAGATTTGTTCCATATCTGAGGGGTCTTCCACATCTTCAGTTTCTTGATTTAAGCTGCAATCAATTTCAAGGAGAGTTAGATATAAACGGTCAGTATTTTATAAATTTGTAA