Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_28638 LG8 12006334 12007916 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 12006382 intron_variant
T/C 12006438 missense_variant p.Lys329Glu
G/A 12006441 missense_variant p.His328Tyr
A/G 12006446 missense_variant p.Val326Ala
G/A 12006456 missense_variant p.Pro323Ser
G/C 12006465 missense_variant p.Gln320Glu
C/A 12006466 synonymous_variant p.Pro319Pro
G/A,T 12006467 missense_variant p.Pro319Leu
T/C 12006490 synonymous_variant p.Thr311Thr
G/A 12006512 missense_variant p.Ser304Phe
C/G,T 12006520 missense_variant p.Gln301His
T/C,G 12006533 missense_variant p.Gln297Arg
A/T,C 12006538 stop_gained p.Cys295*
C/G 12006539 missense_variant p.Cys295Ser
G/T 12006542 missense_variant p.Ala294Glu
G/A 12006554 missense_variant p.Thr290Ile
G/A 12006565 synonymous_variant p.Ile286Ile
A/T 12006566 missense_variant p.Ile286Asn
G/A 12006569 missense_variant p.Ala285Val
T/A 12006595 splice_region_variant&intron_variant
A/C 12006609 intron_variant
G/A 12006652 intron_variant
G/A,* 12006662 intron_variant
T/C 12006663 intron_variant
G/A 12006664 intron_variant
G/A 12006667 intron_variant
A/G 12006668 intron_variant
G/A 12006675 intron_variant
A/G 12006677 intron_variant
C/A,* 12006682 intron_variant
C/G 12006701 intron_variant
A/T 12006706 intron_variant
G/A 12006710 intron_variant
C/T 12006716 intron_variant
T/C 12006727 missense_variant&splice_region_variant p.Arg278Gly
C/A 12006739 stop_gained p.Glu274*
C/T 12006760 missense_variant p.Glu267Lys
T/G 12006765 missense_variant p.Gln265Pro
C/T 12006767 synonymous_variant p.Glu264Glu
C/G,A 12006771 missense_variant p.Arg263Leu
G/C 12006772 missense_variant p.Arg263Gly
T/C,G 12006773 missense_variant p.Ile262Met
A/T,C 12006774 missense_variant p.Ile262Arg
C/G,T 12006780 stop_lost p.Ter260Serext*?
G/A 12006783 missense_variant p.Pro259Leu
A/C 12006786 missense_variant p.Val258Gly
A/T 12006791 missense_variant p.Phe256Leu
C/T 12006827 intron_variant
G/C 12006829 intron_variant
G/C 12006841 intron_variant
T/C 12006914 synonymous_variant p.Glu243Glu
A/T 12006922 missense_variant p.Cys241Ser
T/A,C 12006927 stop_lost p.Ter239Leuext*?
A/T 12006928 stop_lost p.Ter239Lysext*?
C/G 12006943 missense_variant p.Val234Leu
C/A,G 12006962 missense_variant p.Gln227His
T/C 12006990 missense_variant p.Gln218Arg
T/G 12007001 synonymous_variant p.Leu214Leu
A/C 12007002 missense_variant p.Leu214Arg
T/C 12007006 missense_variant p.Ile213Val
A/G 12007015 missense_variant p.Ser210Pro
G/C 12007039 missense_variant p.Leu202Val
C/T 12007149 stop_gained p.Trp188*
T/A,C 12007159 missense_variant p.Glu185Val
G/T 12007199 missense_variant p.Leu172Ile
G/T 12007215 synonymous_variant p.Pro166Pro
G/A 12007217 missense_variant p.Pro166Ser
G/C 12007231 stop_gained p.Ser161*
G/T 12007249 stop_gained p.Ser155*
G/T 12007255 missense_variant p.Ala153Asp
C/G 12007260 synonymous_variant p.Thr151Thr
T/G 12007270 missense_variant p.Lys148Thr
T/C 12007283 splice_region_variant&intron_variant
T/G 12007287 intron_variant
T/A 12007318 intron_variant
A/G 12007343 intron_variant
C/T 12007362 intron_variant
C/A 12007503 missense_variant p.Arg112Leu
T/C 12007506 stop_retained_variant p.Ter111Ter
C/T 12007512 missense_variant p.Arg109Gln
A/G 12007521 missense_variant p.Leu106Pro
T/G 12007545 splice_region_variant&intron_variant
C/G 12007598 intron_variant
G/A 12007632 synonymous_variant p.Cys95Cys
C/A,G 12007640 missense_variant p.Val93Phe
T/G 12007651 missense_variant p.Tyr89Ser
A/G 12007652 missense_variant p.Tyr89His
C/A 12007655 missense_variant p.Ala88Ser
G/C 12007656 missense_variant p.Phe87Leu
G/A 12007660 missense_variant p.Ser86Phe
A/T 12007661 missense_variant p.Ser86Thr
C/A 12007668 missense_variant p.Lys83Asn
G/A 12007683 synonymous_variant p.Val78Val
A/G 12007695 synonymous_variant p.Ser74Ser
T/C 12007711 missense_variant p.Gln69Arg
A/T 12007719 stop_gained p.Tyr66*
A/C 12007726 missense_variant p.Ile64Arg
T/A 12007727 missense_variant p.Ile64Leu
A/G,* 12007730 missense_variant p.Ser63Pro
C/G 12007736 missense_variant p.Asp61His
C/A 12007745 missense_variant p.Ala58Ser
G/A 12007762 missense_variant p.Pro52Leu
C/T 12007781 missense_variant p.Glu46Lys
C/T 12007808 missense_variant p.Glu37Lys
C/G 12007810 missense_variant p.Arg36Pro
A/T,G 12007813 missense_variant p.Phe35Ser
A/G 12007814 missense_variant p.Phe35Leu
G/A 12007817 missense_variant p.Arg34Cys
T/G 12007824 missense_variant p.Leu31Phe
T/C 12007836 synonymous_variant p.Arg27Arg
C/T 12007899 synonymous_variant p.Val6Val
T/C 12007902 synonymous_variant p.Arg5Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_28638.1
MKSLRVCFLIFLLLEALWCEGCWREEREALLDLRFREQPGDCCEWEGVHCNPSTGRVAQLDLSIFYDQQYINYSDFSVFKDLKNLSFAYNNIVGCVGDAELPNLQLFSFDNNDLDTTILSCLDGLPSLKSLYLRENKFSTSSLNQVFESVSRKLRRNLEVLHISGNPLTNEILPSLEGFTSLKELNLSGTELDSDLHFDGLCSTLRNLEVLDLSYNNFNQTDIGSALSGFSSLKSLYLDNSALNWRSIYNISKLSSLEFLDLYGSNLNESGSMLRPFKDNQTFKWPSNLRHLDLRVNSLSNRFVPYLRGLPHLQFLDLSRNQFQGELDISDDVYS*


CDS Sequence:
>Vu_28638.1
ATGAAGAGTTTGAGAGTGTGTTTCCTCATTTTCCTTTTATTGGAAGCCCTGTGGTGTGAAGGATGTTGGAGGGAAGAGAGAGAAGCACTTTTAGACCTACGTTTCCGTGAACAACCCGGTGATTGCTGTGAATGGGAAGGAGTGCACTGCAATCCCTCCACGGGGAGAGTGGCGCAACTCGATCTTTCTATATTCTATGACCAACAATATATAAATTACTCTGATTTTTCTGTCTTCAAAGATTTGAAGAACCTCTCCTTCGCATATAACAATATAGTTGGTTGCGTTGGGGATGCAGAGTTGCCAAATCTCCAGCTCTTTAGCTTCGATAATAACGATCTGGATACCACCATTCTATCTTGTTTGGATGGACTTCCATCTCTTAAGTCTCTTTATTTAAGGGAAAATAAGTTCAGTACATCTTCATTAAACCAGGTTTTTGAAAGTGTGTCACGAAAGCTGCGTCGTAATCTGGAGGTCCTTCACATAAGTGGGAACCCTTTGACTAATGAGATCTTGCCATCCCTTGAGGGATTCACATCTTTAAAGGAACTGAATTTGAGTGGAACTGAATTGGACTCGGATCTTCACTTTGACGGTTTATGCTCAACATTGAGGAATCTTGAGGTTCTTGACTTATCCTATAACAACTTCAACCAAACTGATATTGGCTCTGCTCTCAGTGGATTCTCATCCCTCAAGTCTTTATATTTAGATAACAGTGCATTGAATTGGAGATCGATTTACAATATTTCAAAATTGAGTTCTTTGGAGTTCCTTGACTTATACGGGAGCAACTTGAACGAGTCTGGCAGTATGTTGAGGCCTTTCAAAGATAATCAGACTTTTAAATGGCCATCCAATTTACGACATTTAGACCTGCGTGTAAACAGTTTGAGCAACAGATTTGTTCCATATCTGAGGGGTCTTCCACATCTTCAGTTTCTTGATTTAAGCCGCAATCAATTCCAAGGAGAGTTAGACATAAGCGATGATGTATATAGTTAA


Promoter Sequence:
>Vu_28638::LG8:12007916-12009916(-)
ATGCACTTAAAAGCATTCAGTGACTCTGACTGGGCCACATGTCCTACCACCAGAAGATCCACAACAGGGTTCTGTGTATTTCTCGGATCCTCTCTCATTTGCTGGAAATCTAAGAAGCAGAAAACTGTTTCCAGATCATCCACTGAGGCTGAGTATAGAGCACTTGCTGCCACTGTATGTGAGATACAGTGGCTTTGCTATCTCCTACAGGATTTTCAGATTAAGGCGTCAGGGGTCCCCGCCTTGTACTGCGACAGCAAGTCTGCCCGACACATAGCCCATAACCAGAGCTTCCACGAACGCACCAAGCATATTGAACTCGATTGCCACGTTGTTCGTGAAAAGATTCAGGAACATCTCCTTAATCTCCTTCCAGTGCGATCCGACGAACAGCTTGCCGATATCTTCACAAAATTCCCGCACCGCGTCAAGTTCAAGTCTATTGTTCCCAAGCTTGGACTGGTGACCATACACCGTCCAGCTTGAGGGGAGGCTATTGAGAATCGTATAGATTCTTTACTGTCTAACAGACAGTACTGGACTGTATTATTTAGGTTTTATTGAGCTTTTATTACTAACTGTTTTCAGTTTGCCGGAGCTCTATAAATAGAGTTCCCCTTTGTGTTTTCAGTGTAAGAAACAGTAATGAAGCAACCAGAACAGATATGCATGAAATAAGAAAAGGTTATATTTTACTTACCTCCCTTGCCATCCTCTTCATCTTTGCCTTCTACACCATTGCGGTCTGATGCTTCTACGGCCATCAAACTACCTTGCCATTTTCCTTCTCCTCCATCGCCAGAACACAAGAGTTCTCTGGAAGCTTCATTCTCTCTTTTCACACTCATAAGTCCGTGTGCCACGTCCGCTGCCTTCTTTCAGTAAAAGGGTAATACCCATGCCACGCACAGTGTTGGATTGGGCCATCTCCTCTTCTTACACGCTATTGGGCCTCGTCTTAATAAATACTAATTTATAAACTTAAAAATATTGACTATTTATTTTAATATTTTAATATAATATATATTTATTAAGAAAAATATACATAAAGAATTTATTTAAGTAAATTCATTTTATCAATTCAACTGTTTGAACAATTTATTTAAGGAGGTAAGTTTGAGCGAACTAACTTAAAGTTACTTTTTCTTGTTTGTATTGCTTTATGTTAAATCCTTAGTCTAATTTTATGTGAAATAAAATAAAAAATTTCTTTCAATACTAAAGTTATAAATAAATTTTTATGATAATTCAATTTAATACTTATTCATAAAGTTAAAAATATTTATTATTTATTTTAATTTTTTAATATAATATACATTTATTAATAAATACTAACTCGTCCTAGACACGAGTTTAAAATTAACAATAGAATAAAATATTAACACGACAATTTGAGGTGTGACCTGAAGTCTAAACCATTTGTCACGGACACACCCGTAGTCAAACACGCGTTTGTTACTTTTGGATGAAATGATTAAAGAATTAAATAACATTATCACGTTTATAAAAGAGTATATTTAATTTGGTATAAAAAACTATACAAACATTATTAAAATGTACTTCTTACTTAAAATAAAAACACATAAAACATAATCATCATTTAATAATGAAAATTTACTACACAAAAAAGAACACTAGAAACTATTAGAATTTTATTTGAAACTAAACAAGGTTAAACGAAATGGAGAAGTAATTTTCAAACGAGAAGAAAAATTGTAAAGCTAATTATTTATTAAGACACGTAATATCTGAGTCTATCAATATGATGTGATATGCTAAGGCACAAAAAATTTAAATTTAGTTTAAAACCAATTAAATATAAATAATAATTGGAGAAAGAATATTTTCTTGGTGGAGCTAAGAGAAGTTATGGTCTTCCCTGTTGACCTGAAGTCAAGTGTCTTCATTTACACGGCTTGACAAAATAATGAAATAACGAAATTTTCCTTTTATTTAAGGGATAGGTTGAGACGAAATCCTTGAAGTGGATGAAAAAGAAA


Gene Sequence:
>Vu_28638(-)
ATGAAGAGTTTGAGAGTGTGTTTCCTCATTTTCCTTTTATTGGAAGCCCTGTGGTGTGAAGGATGTTGGAGGGAAGAGAGAGAAGCACTTTTAGACCTACGTTTCCGTGAACAACCCGGTGATTGCTGTGAATGGGAAGGAGTGCACTGCAATCCCTCCACGGGGAGAGTGGCGCAACTCGATCTTTCTATATTCTATGACCAACAATATATAAATTACTCTGATTTTTCTGTCTTCAAAGATTTGAAGAACCTCTCCTTCGCATATAACAATATAGTTGGTTGCGTTGGGGATGCAGGTATCCATTCCTATAAGTCTGTTTGTTATGTTTTATGGAATACTCATTATTTCAACTTTCTTTTACATACTTTACAGAGTTGCCAAATCTCCAGCTCTTTAGCTTCGATAATAACGATCTGGATACCACCATTCTATCTTGTTTGGATGGACTTCCATCTCTTAAGTCTCTTTATTTAAGGGAAAATAAGTTCAGTACATCTTCATTAAACCAGGGTGAGTACCAATTTTTTTATTTATTTAAAGAAATGATAACAGTATTATTTTTTATTATCATGAAGATCTTCTATTTTTTTATACTATATATTTTTTGTTCACATTTGTTGGTGCATATATATAAGTTTTTGAAAGTGTGTCACGAAAGCTGCGTCGTAATCTGGAGGTCCTTCACATAAGTGGGAACCCTTTGACTAATGAGATCTTGCCATCCCTTGAGGGATTCACATCTTTAAAGGAACTGAATTTGAGTGGAACTGAATTGGACTCGGATCTTCACTTTGACGGTAACTTTTCCACTTCATTAATAGAGCTGAGTAGTTGTTAATTAATGGAGGATATATTCCTTGCTTGCAGGTTTATGCTCAACATTGAGGAATCTTGAGGTTCTTGACTTATCCTATAACAACTTCAACCAAACTGATATTGGCTCTGCTCTCAGTGGATTCTCATCCCTCAAGTCTTTATATTTAGATAACAGTGCATTGAATTGGAGATCGATTTACAGTACGGCCCCATATATACTTTCCATATTATAAATCTTGATTACAAAATATATCCACCTGTCTATAATCGGGATATGTATTTTAGATATTTCAAAATTGAGTTCTTTGGAGTTCCTTGACTTATACGGGAGCAACTTGAACGAGTCTGGCAGTATGTTGAGGCCTTTCAAAGGTTAGTTATGATTAACATTTGATAGCATTTTATATTTAAACAAGATATTACTCCCTTTCAACACATGGATATGCATCCTCCTTATTATTTAATTAATTAATATGATAAGTTGATGTTTTCAATTTTGTTTAATCAGATAATCAGACTTTTAAATGGCCATCCAATTTACGACATTTAGACCTGCGTGTAAACAGTTTGAGCAACAGATTTGTTCCATATCTGAGGGGTCTTCCACATCTTCAGTTTCTTGATTTAAGCCGCAATCAATTCCAAGGAGAGTTAGACATAAGCGGTCAGTATTTTATAAATTTGGAACTTTATGTTTTTATTATAAAGATTTTGAATATTTGATGTTATTTATTTTATTTTTTATAGATGATGTATATAGTTAA