Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_28605 LG8 11526734 11529964 leucine-rich repeat-containing protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 11526894 missense_variant p.Asp54Gly
C/T 11526897 missense_variant p.Ala55Val
T/A 11527181 intron_variant
T/C 11527803 intron_variant
C/T 11527806 intron_variant
C/T 11527942 intron_variant
A/G 11527957 intron_variant
C/A 11528219 missense_variant p.Leu168Ile
A/G 11528237 missense_variant p.Asn174Asp
A/T 11528365 splice_region_variant&synonymous_variant p.Val216Val
G/A 11528655 stop_retained_variant p.Ter285Ter
G/T 11529079 missense_variant p.Ala427Ser
T/A 11529091 missense_variant p.Trp431Arg
C/T 11529095 missense_variant p.Thr432Ile
T/C 11529099 synonymous_variant p.Thr433Thr
T/G 11529203 missense_variant p.Phe468Cys
A/G 11529232 missense_variant p.Thr478Ala
A/G 11529499 missense_variant p.Ile567Val
A/T 11529517 stop_gained p.Lys573*
C/T 11529526 missense_variant p.Leu576Phe
C/T 11529559 stop_gained p.Gln587*
G/C 11529574 missense_variant p.Gly592Arg
G/A 11529817 missense_variant p.Gly673Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_28605.1
MELVAGPLMGAIFNVLLERIASTEVVNFFKNKNCEKLLKRLKIILLSVNVVLNDAEEKQMKNGAVKEWLEELKDVAFAAEDLLDEIYTDAKIKAKQVNTLHSGPMSFYCKGVEEKIEDVHERLEFIMRQKEVLDLKVEGFLQQSKRHRRIEEVGNEYFCELFVSGTFSLRMECSNSNEIKERTRHLSHIIADSSSYVNLKDVSKANCLRTFLQIRPVGTHIYSLPNSVGELKHLRYLEVADTEIVRLPESICSLFNLQTLKLVGCHNLIELPASIHKLVNLRHLDIRGTSLRWMPLQINELNSLQNLSDFFVGKGCGSSLGELGELICLHGELFIHCLEHIVSDKDCEKAKLKEKHGLEKLSLDWCGNGETENSQKEKTILNSLQPHTNLKKLDIYDYPGTEFPEWLGDHSFYNLVSLMLNGCKYCYRLPPLGQLPMLKELQISKFEGLVSVGSEFLGNRTSYLTDCFPSLEILRIESIPLWEKWYPNAENAGSKAFFYLREIHIGNCPKLRGDLPDNLPSLTLLVIRDCKRLLCSLPNSPSLRVLNIQNCESLEFKVHSPLCHQSLTSLFLHGSCDSLVFLPLDLFPNIKSLDIWGCKNLEALTVSESDATRPNLKSLHSLRIRHCPNFTSFPKGGFAASKLTLLTINYCQKLNSLPEQMHDLMPSLKEVQLRGCPKIESSSTRPLRIRICSKHMEGKQNLSDPLFARLKGLATDQSPSSS*


CDS Sequence:
>Vu_28605.1
ATGGAACTTGTCGCTGGACCATTAATGGGAGCTATTTTCAACGTGTTGCTTGAAAGGATAGCTTCCACTGAGGTTGTCAACTTCTTCAAGAACAAAAACTGTGAGAAGTTGCTCAAAAGGTTGAAAATCATCTTGCTGTCAGTCAATGTTGTTCTCAATGATGCTGAGGAAAAGCAAATGAAAAATGGGGCAGTGAAGGAGTGGCTTGAGGAACTCAAAGATGTGGCCTTTGCTGCTGAGGACCTACTTGATGAGATCTACACTGATGCAAAGATCAAGGCAAAACAGGTAAACACGCTTCACTCTGGTCCTATGAGTTTTTATTGTAAAGGGGTTGAAGAGAAAATTGAAGATGTTCATGAGAGATTAGAATTTATCATGAGACAGAAAGAAGTGCTTGATCTGAAAGTGGAGGGTTTTCTCCAACAATCCAAAAGACATAGAAGAATTGAAGAAGTTGGCAATGAGTACTTCTGTGAACTGTTTGTGTCAGGAACATTTTCTCTCAGAATGGAATGTAGCAATTCTAATGAAATCAAAGAAAGAACTCGCCATTTGTCACACATTATTGCAGATAGTTCCTCATACGTAAACCTGAAAGATGTTAGCAAAGCAAATTGCCTACGCACTTTTCTGCAAATAAGACCAGTAGGAACACATATCTATAGCTTACCTAATTCAGTAGGTGAACTAAAGCATCTCCGCTATCTGGAAGTGGCTGATACTGAGATTGTGAGGTTACCCGAATCCATCTGCAGCTTGTTCAATTTACAAACTCTCAAGCTAGTTGGATGTCACAATCTTATTGAACTGCCAGCAAGTATTCATAAGCTTGTTAATTTGCGCCATTTGGATATTAGAGGAACAAGTTTAAGGTGGATGCCATTGCAAATCAATGAGTTAAACAGCCTCCAAAATTTGAGTGACTTTTTTGTGGGAAAGGGATGTGGATCTTCCCTCGGTGAATTGGGTGAGTTAATATGCTTACATGGAGAATTGTTTATTCATTGCCTAGAACACATTGTTAGTGACAAGGATTGTGAAAAGGCAAAGTTGAAGGAAAAGCATGGTCTTGAAAAGTTGTCTTTGGACTGGTGTGGGAATGGTGAAACTGAGAACTCTCAGAAAGAAAAAACCATACTGAACAGCCTGCAACCACATACAAATTTGAAGAAGCTGGATATCTATGACTATCCAGGTACAGAATTTCCAGAGTGGTTGGGGGATCACTCCTTCTACAATTTGGTGTCCTTAATGCTTAATGGCTGTAAATATTGCTATAGGCTGCCTCCCCTTGGACAACTTCCAATGTTGAAAGAGCTTCAGATCAGTAAATTTGAGGGACTAGTGAGTGTGGGATCTGAGTTTCTTGGAAATAGAACCTCTTATTTAACTGATTGCTTTCCTTCACTAGAAATTCTAAGGATTGAGTCTATACCATTATGGGAGAAATGGTATCCTAATGCTGAAAATGCAGGAAGTAAAGCTTTCTTTTATCTTAGAGAGATTCATATTGGAAACTGTCCCAAACTGAGGGGGGATTTACCAGATAACCTTCCATCTTTGACATTACTTGTAATCAGAGATTGTAAACGTCTACTTTGTTCACTTCCTAATTCTCCATCTCTGCGCGTGTTGAACATTCAGAATTGTGAGAGTCTAGAATTCAAAGTACACTCACCTCTGTGCCACCAATCACTGACATCATTGTTCTTGCATGGAAGCTGTGACTCACTCGTGTTCTTGCCTTTAGATCTCTTCCCCAATATCAAGTCTTTGGATATATGGGGATGTAAAAATCTTGAAGCACTTACTGTTTCAGAATCAGATGCAACCCGTCCAAATTTGAAGTCCCTCCATTCCTTGCGCATAAGGCACTGTCCAAATTTCACATCATTTCCCAAGGGTGGATTTGCAGCATCAAAGCTCACTTTGTTAACCATCAACTACTGTCAGAAGTTGAATTCTCTGCCTGAACAAATGCATGACCTTATGCCAAGTTTGAAGGAAGTTCAACTGAGGGGATGTCCCAAAATTGAGTCATCAAGTACGAGGCCACTAAGGATCAGGATTTGCAGCAAACACATGGAAGGCAAACAAAACCTCTCTGATCCTCTCTTTGCAAGGTTGAAAGGTCTGGCTACTGATCAAAGCCCCTCATCAAGTTAG


Promoter Sequence:
>Vu_28605::LG8:11524734-11526734(+)
TCATTAGGTTGTTATCAGGTTTGTTACGCACTGAGTAAGACAATGTAATCTGCATTGGTGTAATATGTATTAGGTTGTTATCTTTTGGTATAATTTCATCAGGTTTGTTATGAGGTTTTGTCATCGTAAGACAATGTTTGTTTTGTTATAAGATATTATAAGACAAAGTTTATTGACCATTACGTATTGATGTGGTGATCATTCTTGTATGATGGTTATTGACCATTACGTATGATGTTACTTGTGCACTTTCTTTAACTTATTGTCTCAGATTAGCAAGTATTTGGATTAGCAAAGGAAATATAACAAATAAGACAAATAAGACGACAGTATTAAACACTAACAAGTCACCTTTATAAATAAAACAGACAATAACCTTCCAAATATCAAATTATATTACATAACCTTTCATTAACAAATCAACCTAGTTTCATCAACATTGATATCACAATTACATTACAAACACATATAATAACCACCATCCCCATTAACACCTTCAACCACTTTTGCAAACTAACAAGTAAACAGGTTATTTTCAGCTTTTCAACATCTCTCTCTTCCATCTTCATTAGCATTTGTTCCATCTTCATCAAACTTCCACCCACTTCTTTATTTCTTCCACAGTAACCACATTTCCTTCATGAATTACATCTTCACTGCACCATTGAAAGAAGTTGCATCCAGAAGAACAATCTTCACTCCCACCCTGTCCTAGAAGAAAACACACTCCGTGAACGCAATCTTCACTCCCACCCTCTGGAAGAAGAAGAAAACCACATTAAAAGTCAGATTATTGCATCCATTAAACTTACCTTGAACTTGGGGCATCGCAAAATCTTTTGCCCTTGTTTTTAGGGGTTCTTGCAATGCGAAAGACTGCATTCTGACCACAGAAGTAAGTGGGTTTTACACCCAACCTGCTGACACTGCCACAACTCTGTTGAAACCCCGAACCCAAGCATTTGCAAGAAGAGGATGAAGCAGACATTTGATGAGCTCAAGTATAAACACTGCTTCCACAACTCTGCTTCCAGCACTCTTCCTCCCTAGCACGAACAAGTATAAACTTTCGATGTCAGGGTTGATTAAATATTAGGGCTTAGGGCTATCAACATAAAAAATTTAGTTGTTCACGTGGAATGTTTCATTATACAAAAGAACACCCATTCAACTTAATACATATTGTCATGCATATAAAAATATTTACAGCTCACCATGTGGAGACAGCATCAGTCGAAAATTAACGGATAGGGCTTTATTCCTCAAATTAACAAGTATTTGGATTCAATTGGGAAAAAAAAAAACGAGGACCCAGTTGAGATTCGCGAACAAATATGATGACCAAAAGACATATTTAACCTTATATTAAAAATAAAATATGTTAATATATATTGTAGGAACTTTTTATCACAAAATTAACTTATTAAATTATAAGTATTTAACTAACTAGTTGTTAAACGTAAAATAAGGTAAAAGAATAAATATAACTTACATAATTTTATTATATGATTTTATATTTATTATATTTATTATATTTCTTAGTGTTTTTATTTCTTTTTAAAAAAATATATTTTTATTATAATTAATCATTTCTATAAAATGAAAATAAACAACAAAAGGTAAAAAAGAATAAAAAAGAAGATACACATTAAAACATAAAAATTAATAATAAAATTCTTAAAATAAATTATATTGCTTTAAAATATTTTGTTAAATACATATTTTTGTAAAAGTAACTTTGAAGTTATTTAAATAAGCTACTAGCTAATTAGCCTCATCCAACATTTCTGCTTTATAGAAAAGGGATTCCATGTAATTCAGAGATTCCTTAAACTTTTCGGAGTGGTTGCCAGCTGCAGAACACTGATTGACTTCAAATAATCATTCAACTCTACGATCTTTCAACACTGCAAAGCCAAGCAAACAACATAATTACAGCAGTTACTCCACTTTACCATACACCAAAAATCTATAATCTTGGAACACACACAGCATAGCTA


Gene Sequence:
>Vu_28605(+)
ATGGAACTTGTCGCTGGACCATTAATGGGAGCTATTTTCAACGTGTTGCTTGAAAGGATAGCTTCCACTGAGGTTGTCAACTTCTTCAAGAACAAAAACTGTGAGAAGTTGCTCAAAAGGTTGAAAATCATCTTGCTGTCAGTCAATGTTGTTCTCAATGATGCTGAGGAAAAGCAAATGAAAAATGGGGCAGTGAAGGAGTGGCTTGAGGAACTCAAAGATGTGGCCTTTGCTGCTGAGGACCTACTTGATGAGATCTACACTGATGCAAAGATCAAGGCAAAACAGGTAAACACGCTTCACTCTGGTCCTATGAGTTTTTATTGTAAAGGGGTTGAAGAGAAAATTGAAGATGTTCATGAGAGATTAGAATTTATCATGAGACAGAAAGAAGTGCTTGATCTGAAAGTGGGTAAGGAAGTCAAAATGGCACACAAGACTCCAACCTCATCTGTAATGGAAGCATGTGATGTGTTCGGAAGAGATAATGATAAAGAATCCTTGGTTGACTTGGTGTTGACTCATAATGAGAAAATAGGTGTTATTCCCATTGTTGGAATGGGAGGAATTGGAAAAACCACCTTAGCTCAACTGATATACAATGATCAAAGAGTGCAGAAGGAATTTGATGTCAAAGCCTGGATTTATGTCTCTGAGGAATTTGACATTTGTAAGATTACAAAAACCCTTTTGGAGGCTGTCACGTCTTGTAGTTGTGACGTTGAGGATTTAAATTTTCTGCAGAGGGATCTAAAAATGCATGTAATGAACAAAAAGTTTTTGTTTGTGTTGGATGACGTGTGGAATGAAAATTATGACAATTGGGACAAGTTCAGGAGTCCATTTAAGCATGCTGGGGAACATGGAAGTAAGATTATTGTAACTACTCGAAGTGGGTGTGTTGCATCCATCATGCAGACTGTTTCACCCTATAATCTCAGAGAGTTGTCCAATGAAGATTCCTGGAATTTATTTTCAAAACATGCATTTGATTATGGTGATTCAAGTTTGCAATTGCATCAAAGTTTAGACAAAGTTGGGAGAGAAATAGTGAGGAAGTGCAAAGGGTTGCCTTTGGCTGTGAAGACACTTGCAGGACTTTTGAGGTGTAAAAGTGATAGACAAGAATGGTGTAAAGTACTGGACAGTGAGATGTGGGATTTGCAAGATTCTGAGAGTAACATTCTTCCGGCTTTAAGATTAAGTTACCATTATCTCCCATCACATTTGAAGAGATGTTTTGCTTATTGTTCAATTTTCCCAAAAGATTATGAATTTGAGAAGGAGAACCTGGTTTTGTTGTGGATGGCAGAGGGTTTTCTCCAACAATCCAAAAGACATAGAAGAATTGAAGAAGTTGGCAATGAGTACTTCTGTGAACTGGTATCTAGATCATTTTTCCAGCAACCAAGGCGTGGCAAGTCATGTTTTCTAATGCATCACCTTGTAAATGATTTGGCTCAGTTTGTGTCAGGAACATTTTCTCTCAGAATGGAATGTAGCAATTCTAATGAAATCAAAGAAAGAACTCGCCATTTGTCACACATTATTGCAGATAGTTCCTCATACGTAAACCTGAAAGATGTTAGCAAAGCAAATTGCCTACGCACTTTTCTGCAAATAAGACCAGTAGGTACATCCATTGATTTGTTCAACAACATGCCAAATGATCTGTTAACAAAGTTAAGGTCCTTAAGGGTGTTATCTTTGGTAGGAACACATATCTATAGCTTACCTAATTCAGTAGGTGAACTAAAGCATCTCCGCTATCTGGAAGTGGCTGATACTGAGATTGTGAGGTTACCCGAATCCATCTGCAGCTTGTTCAATTTACAAACTCTCAAGCTAGTTGGATGTCACAATCTTATTGAACTGCCAGCAAGTATTCATAAGCTTGTTAATTTGCGCCATTTGGATATTAGAGGAACAAGTTTAAGGTGGATGCCATTGCAAATCAATGAGTTAAACAGCCTCCAAAATTTGAGTGACTTTTTTGTGGGAAAGGGATGTGGATCTTCCCTCGGTGAATTGGGTGAGTTAATATGCTTACATGGAGAATTGTTTATTCATTGCCTAGAACACATTGTTAGTGACAAGGATTGTGAAAAGGCAAAGTTGAAGGAAAAGCATGGTCTTGAAAAGTTGTCTTTGGACTGGTGTGGGAATGGTGAAACTGAGAACTCTCAGAAAGAAAAAACCATACTGAACAGCCTGCAACCACATACAAATTTGAAGAAGCTGGATATCTATGACTATCCAGGTACAGAATTTCCAGAGTGGTTGGGGGATCACTCCTTCTACAATTTGGTGTCCTTAATGCTTAATGGCTGTAAATATTGCTATAGGCTGCCTCCCCTTGGACAACTTCCAATGTTGAAAGAGCTTCAGATCAGTAAATTTGAGGGACTAGTGAGTGTGGGATCTGAGTTTCTTGGAAATAGAACCTCTTATTTAACTGATTGCTTTCCTTCACTAGAAATTCTAAGGATTGAGTCTATACCATTATGGGAGAAATGGTATCCTAATGCTGAAAATGCAGGAAGTAAAGCTTTCTTTTATCTTAGAGAGATTCATATTGGAAACTGTCCCAAACTGAGGGGGGATTTACCAGATAACCTTCCATCTTTGACATTACTTGTAATCAGAGATTGTAAACGTCTACTTTGTTCACTTCCTAATTCTCCATCTCTGCGCGTGTTGAACATTCAGAATTGTGAGAGTCTAGAATTCAAAGTACACTCACCTCTGTGCCACCAATCACTGACATCATTGTTCTTGCATGGAAGCTGTGACTCACTCGTGTTCTTGCCTTTAGATCTCTTCCCCAATATCAAGTCTTTGGATATATGGGGATGTAAAAATCTTGAAGCACTTACTGTTTCAGAATCAGATGCAACCCGTCCAAATTTGAAGTCCCTCCATTCCTTGCGCATAAGGCACTGTCCAAATTTCACATCATTTCCCAAGGGTGGATTTGCAGCATCAAAGCTCACTTTGTTAACCATCAACTACTGTCAGAAGTTGAATTCTCTGCCTGAACAAATGCATGACCTTATGCCAAGTTTGAAGGAAGTTCAACTGAGGGGATGTCCCAAAATTGAGTCATCAAGTACGAGGCCACTAAGGATCAGGATTTGCAGCAAACACATGGAAGGCAAACAAAACCTCTCTGATCCTCTCTTTGCAAGGTTGAAAGGTCTGGCTACTGATCAAAGCCCCTCATCAAGTTAG