Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_28564	LG8	9163278	9167650	PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5-like isoform X2	Map

Annotations

category		relationship type		keyword
Pathway		B 09132 Signal transduction		C 04075 Plant hormone signal transduction [PATH:ko04075]

SNP	Position	Effect	Amino acid change
T/A	9163412	5_prime_UTR_variant
T/A	9163548	5_prime_UTR_variant
A/G	9163568	5_prime_UTR_variant
T/C	9163655	5_prime_UTR_premature_start_codon_gain_variant
T/A	9164664	5_prime_UTR_variant
T/G	9164694	5_prime_UTR_variant
G/A	9165701	synonymous_variant	p.Val247Val
G/T	9165916	missense_variant	p.Gly319Val
G/T	9165951	missense_variant	p.Gly331Trp
A/G	9165957	missense_variant	p.Lys333Glu
T/A	9166159	intron_variant
G/A	9166371	intron_variant
T/A	9166373	intron_variant
C/A	9166374	intron_variant
G/T	9166376	intron_variant
A/T	9166547	intron_variant
G/C	9167015	splice_donor_variant&intron_variant
A/C	9167017	splice_region_variant&intron_variant
C/A	9167160	splice_region_variant&intron_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_28564.2

MVVAESEMNSQNDDESSIELEQQHDVNKNHPFSSLGREASSIYSITLDEFQHTLWENGKNFGSMNMDEFLSSIWCAEEIQILNNSNSSINVSSFSLNEASAEKGLIRKQPSLPRQGSLTLPAPLCRKTVDEVWSEIHKGQQQRQPQKNNDNNCGSVNNDNNAQNTDSASRQPTFGEMTLEDFLIKAGIVREQCAIATPVPASTSQNQHLQQYGFFPNNNRTMEPSFVGRQVMGLGGGGFGGSAGGNVVRPPYQAVTKGGGGGGAVGQSSGYPAAVPSAVCFGPRAVNGGGGYEAVSNVGVVAPVSPVSPEGIGTGENFGSRFGMDKVVSRGRKRAFDGPVEKVVERRQRRMIKNRESAARSRARKLAYTVELEAELTQLKEENAELKLSLADLERRRKQQHLEEGNWRVQNNLQKAKNKSRSLRRIMSCPL*

>Vu_28564.1

>Vu_28564.3

CDS Sequence:
>Vu_28564.2

ATGGTGGTGGCGGAGTCTGAGATGAACTCACAAAACGACGATGAATCTTCGATAGAGTTGGAGCAACAGCACGACGTCAACAAGAATCACCCATTCTCTTCATTGGGAAGAGAAGCTTCTTCCATCTACTCCATCACCCTCGACGAGTTCCAACACACGCTATGGGAGAATGGCAAGAACTTTGGGTCCATGAACATGGACGAGTTTCTCAGCAGCATATGGTGTGCAGAAGAAATTCAAATTTTAAACAACAGCAACAGCAGCATCAACGTTAGCAGCTTCTCACTGAATGAAGCTTCCGCAGAAAAAGGGTTGATAAGGAAGCAACCGAGCCTTCCTCGGCAAGGGTCTCTAACACTTCCTGCACCTTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGACAACAACAACGGCAACCACAGAAAAACAACGACAATAACTGTGGAAGCGTTAATAATGATAACAATGCTCAAAATACCGATTCTGCCAGTCGCCAACCTACCTTTGGAGAGATGACTTTGGAGGACTTCTTGATAAAAGCTGGGATAGTTCGTGAACAGTGTGCCATTGCAACGCCAGTTCCAGCTTCTACAAGTCAAAATCAGCATTTGCAGCAGTATGGCTTCTTTCCTAATAACAACCGTACAATGGAGCCTTCTTTTGTCGGAAGGCAGGTGATGGGGCTTGGTGGCGGCGGTTTCGGCGGTAGTGCTGGTGGGAATGTGGTTAGACCACCTTATCAGGCGGTGACTAAGGGTGGTGGTGGGGGTGGTGCAGTTGGACAGTCTTCTGGGTATCCGGCGGCAGTGCCGTCAGCGGTTTGCTTTGGACCGAGGGCGGTGAATGGTGGCGGTGGTTACGAGGCAGTGAGCAACGTGGGAGTGGTGGCGCCGGTGAGCCCGGTTTCGCCGGAGGGGATAGGTACTGGTGAAAATTTTGGTTCCAGATTTGGGATGGACAAAGTTGTGTCAAGAGGGAGAAAGAGGGCGTTTGATGGGCCTGTGGAAAAGGTGGTGGAGAGAAGACAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCCAGAGCAAGAAAACTGGCATACACAGTTGAATTAGAAGCAGAATTGACCCAGTTGAAAGAAGAGAACGCCGAACTTAAACTATCACTGGCTGATCTTGAAAGGAGAAGAAAGCAACAGCATTTAGAGGAAGGGAATTGGAGAGTTCAAAACAACCTTCAAAAGGCCAAAAATAAATCGAGATCATTGAGAAGGATCATGAGTTGCCCTTTATGA

>Vu_28564.1

>Vu_28564.3

Promoter Sequence:
>Vu_28564::LG8:9161278-9163278(+)

ATGTCCTCCACAAGAGTAGAATCTTTGAAACTCCATGTTCTTCCATCTTCTTTGACCATGGCTCTTTAGGAGAGGTCCAATGTCTTCTAAGGCTTGAGGGAAAGCAAGAACAAGCTTGAAAGTCCTTCTTCTTCTTCTTCTAATCTCTTAGCCTTAGTTTAAGTTGATGTTCCCTTCATGAATCTCCGTTTAGTTCCCAAAATGGATTCCATCAAAAAGCCATGATTATTCTAGAAGAGTCTTCTAATGAAATTGGAGAAAAAGTCTCTTTAAGGTCAATCTCTTCCTTTTTGAATATAGTCCTTCGCCACAAGACGAGCCTTATACCTCTCCATATTACCTTTGGAATCTCTTTTGGTTTTAAGTATCCATTTACAACCAATGAGTTTTACACACCAATGAGTTTTACACCTTCTAGTAATTAGACAATTCCCAAGTCTTATCATATTGCATGAAGTTATACTTCTCATTCACTACTTAATCCATTTTTCTGAATTAGGATTTTGCATGGCTTGACGAAAGTTGACTAGGTTATCTTTCATCATACCATTATTTTCCTTGTTTTCTTAGAGAGTAATACCACACAATCATATGGAATACTATTCTCCTTTCTCTCATAGATCTTCGGAAAAATACTATCTCATGAAGCATAGATTCTTGAAGATTTTGAGTTTGTTCTTCATAACCAACTAAATTGTCTTGAGTGGGAGATTCAATAACAATATTTTGTAGAGGTTATGAACTTGCTTCATTATAAATAAATATATGAATTAGATAAGAAATTTTCATAAATTCTTCTTCTAAGATACAATCTTTAACCTTAAATATTCTTTCTCCGAAAACTCAATATCCTCAAAAAATGTGCGAGTTTCCGTCTCAAAAAATTATCTTTAAGAAAAACCTAGAAATAATAGTATGTACTCATAAAAATCATAACATTTTTATGTATATTTGTCAATTACGTTTTTTAAAAAATCAATATCCAATATGGTTCTTATCAAATTAAAATATTAAATATAATAATTATATAATTAATATTTCGTAATATATATATATATATATATATATATATATATAATTTTAATCATAAATATAATTATTTAAATCATCTTAATATTTTCACTACTGATCGTAATATATTTAATTATTTATTATATATATCACCCAAATGCTAACATTAGCTATGATTAATGTTATCTTACATATTTGAATATTAAAATTTTCTCGTGTAATTATCTGTCCGATGGAAATTTTAAGAATATTATATTTAAAAGAACTTATTCTACATTCATTTGGTCAACTGATAATATACTATGTAAGGTGAAACAAATATAAAAATTCTATCTTACACTAATAATAAGAAAATGAAACTGTGCAAGTATAAGTAAATATCAGCCAAGCAGAAATGAATATGCCCTTGCAGCATTAGGACACAACCAACCTGCGAGAGTAGATGCTATCAACTGTTCACATTATATCATATTATACCCTTTGAGTCATTAATTTATACAATTTTCATGAGTAATATTTCATATGTTTAGGCATACATGACTGAAGAGTATTTTCAGTACAGTTTGTTTCTTTTGGTAGAACTTTGAAAGTAGCCATTTTTCCAATTTTGTTAAGCTATAAACGTATTATATGTGAAGCTTGCTTTTATACATATATATATATATTCTTTTGCAATGACAGAAAAGTAATTGAAAAAGAATCACCTTACCAAGGCATGTTTCACCAGAAATAGATATCCTTATCTTGGTTTGTACCTCACAGTCAAGAGAGTAGACACCAACACATTTCCAACGAAAAATTTTAAATTTTTTTTGAAGAAATTAAGTAGTAGGTGGCAAAGAAATCGAAGGGTACACGTGTTGAACTCAAAGCAGTGACTGCACAGAACGAGGTTCAACAAACGACACCTGTCCTTAACGTGGCAAAAGGTTCGATCAGGCTTAGGAAATTGGTCCCTGATATTTTGTTCTCTACGTGGGACAACCTCA

Gene Sequence:

>Vu_28564(+)

AGTTCCTCAATTCTTATATAATATGTTCCTGCATTTAACAGCTTTTTATCCTTTAATTTAGTAACTGTGTTTTTGTGTGGCGTCTCTGTGAGTTTGAACACACACACTGTGCAAGTGTTGCCACTTCCAAAACCTCTTCTTCCCAATTAGCCTTATAATCAAGTTCTGAAAATGTTGTAAGCCACACAAAAAGAACTGGTATTTGAGTTGAACACATTTTTCAGGTATCTTTTCTTTTATTTTTTTACTATATTTTTGTATACATTTATATTTATATAATGTAATTGTGTATCCTTGCTGATCTGTGTTGTCATTGCATTATTCATTCTGTCTTTTGGTTTGAATGAGTTATAGATTTCACATACCAGAATGCATGCTTGATCCTTTGGCTTGACTTTCTGGATTATTTTTTTTTTACTTGTAAATTTATATTTGAACAAGAGACTTTCACCTTCGAATTTTCTTCGAGTTTTTACACAAAAGAATTGATAGAACATATAATTTTTCGTTAAGAATAGCCCACACTATGTCTAACGACTTTTTCTTTTGTTAACTAACTCACTTTTCAAATGATGTATCAGAGTTTACAAGTTTTCTATATTTTCATTTAATTATAAATTAGGACATGCTATTTCTTAATTTGTATTATAATTTAAAAAGTTATACTATTTTATGATTGAACAAAAACCTACTTTTTATTTTTTGAAATCTGGCCATTTTTATTTCTCTGAAAAGAATTACATTTGAGAAGAGTTGTAGTTGTTGTTTTTGGTATTTTTGTTTAGTGAAAACTTAACTCACTTTAAAGAAAAACTTGAACTTTATATTCATTACATTATTACTATCATTATCAATATACTTGTAATTTTGATTAGGCACATAAAAGAGTGAAATCCCCCTAAGAACAAGGTTCTAAATTTTGACCTCTTGAATTGGTACAATGTTAATGGTTACGGAGGCCCATCCATACCTACTGCACTTCTGTGCTGTGTGCCAATTAAACAGGTAGTTGCTTCGATATTTGTAGGCAACGCACTAGACAAAGGATTCAACTTTTGCTGCCATCCCTTGCCCAACTTCATACACTCATAATATTCTTTCTTCATGCACTTTCTTAAGTGGGATTCGGTGGAGACCAAGAATTTCCTCTTCAGTCCAACAAGAATCAAAATCCACATATATGTTTCTCCATACCCTTTCGGATAATATTAAATAACACAGCTAAGTTTTTTTTTTTTTTTCTTTTTCAATTGCTTTCTTGCACCTGACTGAGAAAAAAGGACTTCACTCTACTACAGTCTCTTACACATTGCAGAGAAAAAATTGTTTTTGACTTTTATCTGTGTATTGAATTTTACTATGTGGATGTGAGCTTGGGAAACCCCTTGTTTGATTCTCTTACTCATCAAATAGATGTGCTACAATTGTCACTACCACTGCGACATCTAGTTCTAGAGCTATGAATTGAAACATTCATTGCTCCCTTTAATTTTGATATATGTTTGGATTTCTATTTACTAACGCAATGCCAAAAATAAGAATTGAAAAGATAGTTTTTTGTTCTTTTATTAAGAACACAGTGCCATCATAATAAAGTTGTTTAGTTTCCCTCCTATTCATCTTTTGACCTTTCACAATGCAAGTGTAAGAATAAAGAGAACAAAAAACCAACGCTTGAAAAGCATGGTGGTGGCGGAGTCTGAGATGAACTCACAAAACGACGATGAATCTTCGATAGAGTTGGAGCAACAGCACGACGTCAACAAGAATCACCCATTCTCTTCATTGGGAAGAGAAGCTTCTTCCATCTACTCCATCACCCTCGACGAGTTCCAACACACGCTATGGGAGAATGGCAAGAACTTTGGGTCCATGAACATGGACGAGTTTCTCAGCAGCATATGGTGTGCAGAAGAAATTCAAATTTTAAACAACAGCAACAGCAGCATCAACGTTAGCAGCTTCTCACTGAATGAAGCTTCCGCAGAAAAAGGGTTGATAAGGAAGCAACCGAGCCTTCCTCGGCAAGGGTCTCTAACACTTCCTGCACCTTTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGGACAACAACAACGGCAACCACAGAAAAACAACGACAATAACTGTGGAAGCGTTAATAATGATAACAATGCTCAAAATACCGATTCTGCCAGTCGCCAACCTACCTTTGGAGAGATGACTTTGGAGGACTTCTTGATAAAAGCTGGGATAGTTCGTGAACAGTGTGCCATTGCAACGCCAGTTCCAGCTTCTACAAGTCAAAATCAGCATTTGCAGCAGTATGGCTTCTTTCCTAATAACAACCGTACAATGGAGCCTTCTTTTGTCGGAAGGCAGGTGATGGGGCTTGGTGGCGGCGGTTTCGGCGGTAGTGCTGGTGGGAATGTGGTTAGACCACCTTATCAGGCGGTGACTAAGGGTGGTGGTGGGGGTGGTGCAGTTGGACAGTCTTCTGGGTATCCGGCGGCAGTGCCGTCAGCGGTTTGCTTTGGACCGAGGGCGGTGAATGGTGGCGGTGGTTACGAGGCAGTGAGCAACGTGGGAGTGGTGGCGCCGGTGAGCCCGGTTTCGCCGGAGGGGATAGGTACTGGTGAAAATTTTGGTTCCAGATTTGGGATGGACAAAGTTGTGTCAAGAGGGAGAAAGAGGGCGTTTGATGGGCCTGTGGAAAAGGTGGTGGAGAGAAGACAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCCAGAGCAAGAAAACTGGTACTTTCTGCATTTCATGATTAAACTGCATTGATACGAAGCTAGATGTCTTGTCTTGTTAATCATTGTTCTTGATAAATATGCTTTTTGTTTGTCTGGTTCTTAGAAATTATACTGTGAAATTTGCACTGCAGCTTTCATAGTTTAGATTTGAAGTTCTGTTCTTCCAATTTTTATGAGGGTTACACACTTTCTTTTAGCAATACAACTTCTCTCCAAAAAGGAGTGAGAAAAAGGAAAATTAATCTACAAATGAAGTAGTTTGTCCCTCTTGAAAATATGTTACTAAATCAACTCCTAATTTAGCCACAGGATCTGGCAACTTGTTTTGATATATTCTTTTTCAAAATTTAGATAACAAGGATATCAAATTGTCAGTAAAATTTTGTTGGCTGCCACATGCCTAGGTGCGTTGTGATTTTCAGTTGGTGAGCTCCCGCATCACTGATAATTGAGGCAGGCAAAACAGTTAGGCTAATTAATTATAAAAGCACCTTTTTTTAACATTGTATAGTTTACTCTTATGATTCTTCTTTATTGATAAACTTTCTTTCCCGTAAGTGACAAAAGGGTGATGTAAAGGGGTAGCGTAAAAGATGTTAGAATAGGCTTTTTCTTGTTAATTAAACTGATTACCTGCTTTGGAGGAAAAGGTAGAGAAAAAGGTACCTGATTAGATAAGTAGGATTACTTTTGAGAGCTTTTGGCCTTAGAAAACTTCCCCCTGTATAAATTCAAACAAAGGAATGAAATTGCAGTAGAGGGATAAAAAGTTTTAAACCTGTAAAATACAAAATGGTTGCTTTCTTATCTTAAACCTTTGAACATAATATTGTTAATGACCTTTCTTTTCGTGGTATTATCTTTCACTTTTGCTTTGGCAGGCATACACAGTTGAATTAGAAGCAGAATTGACCCAGTTGAAAGAAGAGAACGCCGAACTTAAACTATCACTGGTATGCCAACTATATTGTACTTTGATCAATGTTGAAGTTCTTTCTTTATTTTGTATATTGTACCCAGTAATTAGATTCCATATCTAACATGGATCATGCTTCTATACATAGGCTGATCTTGAAAGGAGAAGAAAGCAACAGGTAACTAATATTCTTATGCAATTAATCACAAACATTTATTTATTCTAAGATTTAGGTAATGGTTGTCCTTTCAAATTCCCTGAGCATAAGAACATCACAATGTGAACTACAGTCACCTTTTTTGCAGCATTTAGAGGAAGGGAATTGGAGAGTTCAAAACAACCTTCAAAAGGCCAAAAATAAATCGAGATCATTGAGAAGGATCATGAGTTGCCCTTTATGAGAAAATGATCTGCATCTATAAACAGTACTGACAATGCTTAGATTTTAGCACAGAAAAGACTCCATGACGCAAAACTAAGAAGAAAGCAGCAGGACATAGAAAAAACACTGAAACTAATGTCAAAGCCAATAAGGGAAGTTCGTGTCGATCAAAGGATTAGTTTACTGTTTTTCATGATGAGTGACCGGTTAGTGAAACATAGTAAATATATGTAGTTGCTTGTGTTATATTAATAATATTTTCAGTGTCAAATAAATAAAATCATTTACACT