Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_28389	LG8	5321678	5322259	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/T	5321798	missense_variant	p.Ala41Ser
G/A	5321848	synonymous_variant	p.Ala57Ala
G/A	5321923	synonymous_variant	p.Pro82Pro
G/A	5322020	missense_variant	p.Gly115Arg
A/T	5322024	missense_variant	p.Asp116Val
G/A	5322133	synonymous_variant	p.Val152Val
T/C	5322135	missense_variant	p.Phe153Ser
C/G	5322188	missense_variant	p.Pro171Ala

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_28389.1

MQKRKAGRKKFHETRHPVYKGVRQRNGKWVSELRQPNNKNARVWLGTFARPDMAAVAYDVAALAFKGDNASLNFPDAISSLPHLNSATSSVKTIQIAATEAAEKHFSCAEFQKLGDYLSSEGGSGSFSWDEDCSELSSEESSRKFFWDEEEVFNMPELLNSMAEALVITPPALQKGFNWVGGETTVDLTLWRN*

CDS Sequence:
>Vu_28389.1

ATGCAGAAACGAAAAGCAGGGAGGAAGAAGTTCCATGAGACACGTCACCCGGTGTACAAAGGTGTGAGACAGAGGAACGGGAAATGGGTGTCTGAGTTACGACAACCTAATAACAAAAACGCACGCGTGTGGCTTGGAACCTTCGCACGCCCCGACATGGCTGCTGTTGCGTACGACGTTGCTGCTTTGGCTTTCAAGGGTGATAACGCTTCCTTGAACTTCCCTGACGCGATTTCTTCATTGCCGCATCTCAACTCGGCTACGTCCTCTGTCAAGACCATTCAGATTGCCGCGACAGAAGCAGCGGAGAAGCACTTTTCTTGTGCCGAGTTTCAAAAGCTGGGAGACTATCTTTCTTCAGAGGGAGGTTCTGGAAGCTTCTCTTGGGATGAAGATTGTTCGGAGCTGTCATCTGAAGAGAGTTCTAGAAAGTTCTTTTGGGATGAGGAAGAGGTGTTTAACATGCCGGAGTTGTTGAACAGCATGGCGGAAGCGTTGGTCATTACACCCCCTGCTTTGCAGAAAGGGTTCAATTGGGTTGGTGGGGAAACCACAGTAGATTTGACTCTGTGGCGAAACTGA

Promoter Sequence:
>Vu_28389::LG8:5319678-5321678(+)

TATATATATATATATATATATATATATATATATATATATATATATTATAAATTGGCCTTATCTTTAGTCGATGTGGGACTTCCAACACATATTGCTAATCTGTTTGGTAACTATTCTGAATGAATTTAATGGTGTAGTGACGTCCTATTGGAGCATTCAAGTTGTAGAAACCTTCCCCTACCAAGGTAGTATCTTAGGAAGTGGAGAGGGAGGTGAATTTGGAGTTCAAGTAGGTTGTCCCAGAAATCTGTTTTGATATCCCAGCAAGATTTCATCAACCAGAATAGGCTATTTTCAATATGTTTTGGAGGAGTTCAAGTTTTAGACTATAATTCAAGTGTGTTTGGGTGCCAATATCATAGAACACTTGCTGTTTTAGAGTAGATTTTGTTATTTGATTAAGTGACTTGGAAAAATGCCCTTGATGCAATTCTAAGTTCACAATTGAACTTTGTAATAGCTTAAAACAGTGGATTAGTGTGAAAGTGTGTCAAGGGGTTCCAAGTGTTACTTGCACTTTCACTTAGGAGTGTCTAGCATTTCTATTTGCATTTACATTTATATTATTTTGCTTGACTTCTTGAATGCTGGCTTTGTTTTAAGTCTCTGTGATATTTAGGATAACATAGCATATTAGTCTAACCCTCCTTTGGTTTAGGAACATTTTAATTTGCATTTGAAAAAGCTTTTTGAAAGATTTTTACTTAGAAGCTTAGGTAAAGATAATCCGAGAAAACTCTGGCTAGGAAGTGGTTCTTAAGCTTGTCCATTTGTGACTCACTTTTCTTCCCTGGGAGCTACTTAAAGAAACTTTACCTTTAGTTTCTCTTTAGAAATCCTTCAAGTAAAAAATATGAAAAGTTTATGAAAATCTCTTTCACCAGTTCTTGAAAAATTTGTGAAAACAATTTGTAACATTTCACAATTATGACTCAATCTAGTGTACAAGGTAGTGTGAGACCTGATATCATGCAACTAATGGAAGAATTCAATGGAACATAAACTTGGATGAATCAATGGAAAGATTAAAATGTACTTCTCTACTATTTATTTCACTTGTTTGGTTGTTTTTAAAAGCTCTTTGTGAGAGTCTTTATGAAACTCTTAAATTATCAAAGAGTTATCTATAAACCTTTTCATTACCACTAGGTTACAATAAGTTTGCAAAGTTTATATTGGATCTCTTTTCCAAAATTAATATTTTGTTCATTTAACACCTTTTACTAGGATATAATTTTTTAAATTATTTATAATATTTTTTTTTTCACTTATTATATTATTACAGTTTATACAATAAAATTTTAGGACAGAAAATCGTTGATGAAGCTAGAACAAAAATTGATTTTAGGATATATTTATTAAGTTAAAATGTTTGTTATTACTTTTTTATACTTTTAAATGAAGTGAATATATATATATATATATATATATATATATATATATATATATTAGTATATCCAGTTTTAGTGAAATTTTAGAGAAGAGTATATGATAGGTGTACATATGGCATGACTGATTTAATTTTTTACTTTAAAAAACACCTAAAAAAATAATGTAAAGATAATGAATTGAGGAGACTTTGTTTAAAAAAGACATTTTGAGTAGACTCATAAAAGTTGTAATAGACACTACTAGGCTGAAATCTCTTTTTGAAACACAACAATAACCAACATTTTTTATTCAGTTTCCCCACGTGTTTCTGTGCACCAAAGTTCAGAATCAGACACGTGCATCATAAAATATACTGGTCCAAACAATTTACGCACGCTTCTCACACCATCCTGGTGCCACAATGATACGTCGCTGTAGTTCTGTCACGTTCCGTGACAACGGTATCCTCTTGGGGCCGCAAGCAACCCGTAACATACCACACAAGTTCCCACCTCACTAATTTTTTCCCTCCCAGTATAAAATCACCCTCATTCAACACTTCTCTACGGTCACTAAACCTAATTCCTTACAACTACAGTGCCAACTTTTGGATTAACACTGTGCACAAA

Gene Sequence:

>Vu_28389(+)