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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_28382 LG8 5074279 5076395 PREDICTED: growth-regulating factor 3-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 5074679 intron_variant
A/G 5074684 intron_variant
T/C 5075099 intron_variant
A/G 5075327 intron_variant
T/C 5075370 intron_variant
C/T 5075526 missense_variant p.Gly90Glu
T/A 5075538 missense_variant p.Glu86Val
T/A 5076004 intron_variant
C/T 5076009 intron_variant
T/A 5076112 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_28382.1
MESCFSFAQWQELELQTLIFRYMLAGTPVPPQLLQPIKKSFFHSPPPFLQLYHPPLLESGYYWGREALDPEPGRCRRTDGKKWRCSREAVEGQKYCERHMHRGRNRSRKPVEQPHASSSSLSSASFKHHLLHHNQISTGAKSNSKSLSENHDHVDGNGRSDGHVLRHFFDDWPRTLQEQDHSKSNGSQNNNTGTYLSMSTQGITSSDVSLRLSTGHAENTSHVASVGGPLAEALRSSTSTSSPTSVLLQLPTSSACNTSFIST*


CDS Sequence:
>Vu_28382.1
ATGGAGAGTTGTTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGACTCTGATATTTAGGTACATGCTGGCCGGTACTCCTGTTCCTCCTCAGCTGCTTCAACCAATCAAGAAAAGCTTCTTTCATTCCCCTCCCCCTTTCCTTCAACTTTATCACCCTCCTTTGTTGGAATCAGGGTACTATTGGGGAAGAGAAGCACTGGATCCGGAGCCAGGTCGGTGCCGGAGAACGGACGGGAAGAAGTGGCGGTGCTCGAGGGAGGCGGTGGAGGGTCAGAAGTACTGCGAGCGGCACATGCATCGTGGCCGAAACCGTTCAAGAAAGCCTGTGGAACAACCTCATGCATCTTCTTCTTCTTTATCCTCTGCTTCCTTCAAACATCATCTCCTTCACCACAATCAAATTTCCACTGGGGCCAAGAGTAACAGCAAGAGCTTGTCTGAAAACCATGATCATGTAGATGGGAATGGCAGATCTGATGGCCATGTCCTGAGGCATTTCTTCGATGATTGGCCAAGGACACTGCAAGAACAAGACCATAGTAAAAGCAATGGTAGCCAGAACAACAACACTGGAACATATCTTTCCATGTCAACACAAGGAATCACTTCCTCGGATGTGTCACTGAGACTGTCCACTGGTCATGCAGAGAATACAAGCCACGTGGCTTCAGTGGGAGGACCACTCGCAGAGGCACTGAGATCATCCACCTCCACTTCTTCACCAACCAGTGTTCTGCTACAGTTGCCAACTAGTTCTGCTTGTAACACCAGCTTCATTAGCACCTAA


Promoter Sequence:
>Vu_28382::LG8:5076395-5078395(-)
TGAGACAAAAGAACTTCGCCCTCAGCGCCCCAAAATGACGCTTAGCGCTATCTGAGATTCTTCTATGTGCTACTTTTCCAGCCTTTCCTGACTCCAACTTCTTGCTACTTCAACTTCTTCATCCAATTCATCTTAATTCTTGTCAAAACAAGGAAAGCTAAACATAAAACTAATAATACCATCTTCAACTCTCTTATTCTCACAACTTAAGGAAAAACATGATTAAATATCTTAAAAATAAAGGGTATTTTTAATATCAAAATTAAGTATAAAAATAATGGTATTCCAACCGTTACTAATAGTAGCACATACAGATTAAATATCTTAAAAAAAGATATTTTTTATACCGGTCGTAACGCTAACATGTATAAAGTGTGTCTTTTTATACCTGTTATAGCAGCAATAGGTATAAAAAGTGTGTTTGTGGAGATCGAAAGTAAAAAGAAACTTTTTGTACCTGGTCCCAATATATCAAGTATAATAAAGTCATAATTTTATACCTGTTATGAGCAAACAGGTATAGAAAGACGTAAACTTTCTATGCTCCCTGCTTCTATACGTGCTCAAAAATTAATATCAAAAGTGTTTTTTTACAGGTATAAAAAGTTTTTTTTGTAATAGCGACAACTGCACATTTTTTATTGAAAGTGAAGTGAAAACTAGGGCTTTTGTAACTTTGTGAATTGGCTTAGAAACTTGGTGTGGGCAAGAGCAAAAACTTTCATTGTATGTATGATTGAGTGTTGTTGTTGTTGCTAAGTGAAGTCTGTCATCCTTGATAATTTGGAGGAGGTTTAATCCCTTGTAAGTTTCAAGAGAAGTGAGTATGTTCTTTTCGGATTTCAATATAGGTGTTTTGTAAACCTTAAATTTGTTTTTTTGTGTGATTGTAAAGTTTATTGGTTTTGTGATAGTAAAATGTTTATCTCTTTGAAGATTAACAACTGATCGTAAAATTCTTGTGATCCGAACCAATATAAAATTATATGTGCAATTTTCTATCATTTGTTATTCTATTTTATTTGTTTAAATTATCTGCCAAGTAAAATAAAATTTAAAAAATTTTTAAAAGACACGTTTTAAAAAAGAAACCAATTTATCCCTTCCTATTGTTAACTTGCTATCATTTTAGTGCAAAAACGACTAAATGGGAGAAAGATTTTGAAATGTAAAGATTCTAAAATCTATGTTTTGGAAATAAACCTATGAAAGAACGAAATTTCAATTTCCCACATTATTACCCATTGTTGCCTTACAATTCCACGTAATCAAAAATTAATTAAAAAAAATTACAACTGGATCCATCTTAGTCTATATGTTAGAGTTAAAAAATTGTAAAAAAAAATATCAATATATCATTACTCTTCTTTTTCTCTCTAACCTGTCTTGTCCTTCTCACCATTAACTTGTCCTTTTTCCCAAGTGCTGTAGCCGTTCCCCACTCTGCCTTCAAAACCAACTTATCTTTTACCTCTTTCCCAAGTTTTTCTTATATTTAAACATACACTTTAACATATTATTATTAATTAATTAAGTAGCAAACTCGTGTAATATCTCTTTAAAACAATCTGTTCTAAAATTAAGTTATTTAAAAATATTCAAAGTGATTTTGCAGGAAATATTATAAGGGAAACTAAACAGCGTAGCACTCTGCAAAAGTCTTACAAACCTGATCTGCTCAAATCCAAAGTTTTATCAGCCGACCAAACAAACCAAAAGCAACACAAACAGAACTCAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTTAACCCAGTACCAAAGTCACCAAACTGCCACCGTTTTCTGATTCCACCCTTGCTTCTGCACCTCCCAGATTTCCCAGTAAGATTTACCATTTCCTCTTTTCTTCTCGTTGCTAAAGAAACAAACTATGATGGATTGGTTCATAGTTTTTATACCCTTAGTTTTCAAAGGTTGTCTCTTTTTGTTGTCTAATTTAGTGGGTCTGTATGTATGTAATGTCTCATCAGGG


Gene Sequence:
>Vu_28382(-)
ATGGAGAGTTGTTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGACTCTGATATTTAGGTACATGCTGGCCGGTACTCCTGTTCCTCCTCAGCTGCTTCAACCAATCAAGAAAAGCTTCTTTCATTCCCCTCCCCCTTTCCTTCAACTTTATCACCCTCCTTGTAAATTTCTAACCCCATTTTTCTTCTACTTCCAAATTTCTCATTTACTAATATCAAATGGACATTTTAATGGTAGTCAGGAACAGAACTTAAATTCACCTTGATAGTAGTTTGCTAATTTTTGGACTGATTCTGATTTTATTAGAATTTTATTTCAGTAGTTTTTTTAGTAGAATTATTGAAGTGAAATTGATTGCAATTAATTTCTGAATTGGCTAAAGGTATAATGTTAAGTTGTTTTGATATTCTGTCAGAAAACTGTATAAAGTTTAGTCCTTCTTGTAGTTATATAAGACATGGTGATGTGAGGTTGTTTAAGTTTAGTTCATGATATGAAGTTCGAATTTTGAATATGCAAAACGTTTTAAATATTCAAAAAAAAGAAGAATTTTATTATTAATAGTAATCAAGTTAAGTGGAGTTAAGATTACTTTTGTTACTTTTCTTCTATTTGTTGTTAGTTTACTTTGAGGTGTTGGCTTTACAAAGGTGGTAGAATATGAAAGGTTATTTTTTGGGCTATAATACCTTATGCCCATTAAAGTTAGTCCATTTGGGTGAAAAAATTGTGATGAAAGATTTGATTTTTTTGGCATCAGTGTTGGAATCAGGGTACTATTGGGGAAGAGAAGCACTGGATCCGGAGCCAGGTCGGTGCCGGAGAACGGACGGGAAGAAGTGGCGGTGCTCGAGGGAGGCGGTGGAGGGTCAGAAGTACTGCGAGCGGCACATGCATCGTGGCCGAAACCGTTCAAGAAAGCCTGTGGAACAACCTCATGCATCTTCTTCTTCTTTATCCTCTGCTTCCTTCAAACATCATCTCCTTCACCACAATCAAATGTATGTCTTCACATTGTGAAATTTGTTGCTTTTCTTTTGAGTTTCATTTTGAATTATGTGGATTGCTATGTTAATTGGTCAACCACCATAGATTACCAAAAGGGTTGCTGCTTCATAGTGTAATGAAAGAGCTTCATCTAATTTGGAGGCACTCTCATTTAATTTGTGATTTAAGAATATATATATATATATATATATATATATATATATATATATATACACACACACACATTAAAAAAAAGAAGAGAAAGAATGTAGACATTTATGAATTTGATTCTTGAATTTAAAAGACTTGATCAAAGTTAGAAATGACTAAATGTACATTTTTTTCAAAGTTCCCAATTCATTGTTTGATCGGAAGCTTGTATTTCTAAAACACAATCTTTTTATTGTGAATAACGGTTGTAGAGAGATAGATAAAAGACTATACTTGTTTCAAACCTTATAAAATGAAGCCGTAATTTTCTGAAAACTCAATTTTTTGGATTGCAAATGGTACAATATAGGAAATGGTACAATCAACGATTGTACATTATCAAAACAATATGATGAAACGAGTTGCAGGATGGACTTTCTCTTTTCTTGTCTTATCTTTTCTGTTAATACTTGGTGGGTGTGTAGATATATGTTGTTTCCATTTTACCTGTTTTGGACGTGAATCCAAATTCGTCCATACTGCAATGTCCTTTCGTGAAAACTAAGCTGTTTTTGCCGGTTTCCCTGTAGTTCCACTGGGGCCAAGAGTAACAGCAAGAGCTTGTCTGAAAACCATGATCATGTAGATGGGAATGGCAGATCTGATGGCCATGTCCTGAGGCATTTCTTCGATGATTGGCCAAGGACACTGCAAGAACAAGACCATAGTAAAAGCAATGGTAGCCAGAACAACAACACTGGAACATATCTTTCCATGTCAACACAAGGAATCACTTCCTCGGATGTGTCACTGAGACTGTCCACTGGTCATGCAGAGAATACAAGCCACGTGGCTTCAGTGGGAGGACCACTCGCAGAGGCACTGAGATCATCCACCTCCACTTCTTCACCAACCAGTGTTCTGCTACAGTTGCCAACTAGTTCTGCTTGTAACACCAGCTTCATTAGCACCTAA

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This project is funded by the Department of Biotechnology
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