Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_27957	LG7	43088828	43090756	PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	43089061	synonymous_variant	p.Leu78Leu
A/C	43089196	synonymous_variant	p.Thr123Thr
C/G	43089376	synonymous_variant	p.Leu183Leu
T/A	43089569	missense_variant	p.Leu248Ile
T/C	43089579	missense_variant	p.Ile251Thr
A/T	43089694	synonymous_variant	p.Gly289Gly
T/C	43089946	synonymous_variant	p.Leu373Leu
G/T	43090165	missense_variant	p.Gln446His
T/C,*	43090189	synonymous_variant	p.Ser454Ser
A/G	43090729	synonymous_variant	p.Gly634Gly

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_27957.1

MGYQLVQIVTLLTVIAFGALRKVRGECSSDDLEGLMAFKNGIQMDTSGRLAKWVGRNCCEWEGVVCDNATTRVTQILLPGLNEKDFVQTQMVGQLSPSMTLLTSLEILDLGGLVGLSGAIPLTIGLQMPKLQKLYLYGNNLTGPVPESIGGFPNLQELALHENRISGSIPSSLGSLRKLKRLLLYSNQISGTIPFSLGSLTNLVELDVHDNALMGHIPNNIGQMLSLEKLDLSSNMLSGSIPSSITNLTAISVLYFDTNYLEGTIPFPSRPGEMPSLNFLRLHNNHLSGNIPPSFGYLVSLQRVSLSNNKLEGALPSSLGNLHSLTELYLSDNSFSGQIPKSIGQLSQLIMLNISNNLIQWPLPQEMSSLQNLQTLDLSFNPLSLSSIPPWLTSMSSLSRLYLAACGIKGQIPDSLQTTQSPIQELDLSGNLLSGPIPSWLGSFSQLYLLNLSSNSLELHIPDSLTNLPDLAVLDLHSNKLTGSITGVFNTAQQGTSGGSLTYIDLSNNNFSSGVEAIGVGEQLNIQHLNLSHNLLKGTLPGSLGRLNSIHSLDLSFNELASNLPEVLAKLILLESLKLQSNHFSGNIPNGFLKLRKLKELDLSDNVLEGEIPKGKPLIDFPGSTYSGNKGLCGKPLSPCKV*

CDS Sequence:
>Vu_27957.1

ATGGGCTATCAGCTGGTACAGATAGTTACACTTCTGACAGTGATAGCATTTGGAGCATTAAGGAAAGTAAGAGGAGAATGTAGCTCAGATGATTTGGAAGGTTTGATGGCATTCAAGAATGGCATTCAGATGGATACATCTGGCCGGTTGGCAAAGTGGGTTGGTAGGAACTGCTGTGAATGGGAAGGTGTTGTCTGTGACAATGCAACCACCAGAGTGACACAGATCCTTCTCCCAGGCCTCAATGAAAAAGATTTTGTTCAAACACAAATGGTGGGCCAGCTTTCTCCTTCCATGACACTCCTCACCTCTCTTGAAATCCTTGATCTCGGAGGCTTAGTAGGCCTCAGTGGAGCAATTCCCCTAACAATTGGGTTGCAAATGCCAAAGCTCCAAAAGCTTTACCTTTATGGTAACAATTTAACTGGCCCAGTACCAGAAAGCATTGGTGGTTTTCCAAACCTCCAGGAACTGGCACTGCATGAAAATAGGATATCTGGGTCAATCCCTTCTAGCCTTGGAAGTTTAAGAAAACTCAAAAGGCTGCTCCTTTACTCAAACCAAATTTCAGGTACAATACCCTTCTCACTTGGGAGTTTGACCAATTTGGTAGAACTGGATGTTCATGACAATGCTCTTATGGGTCATATACCCAACAACATTGGTCAGATGCTGTCTTTAGAGAAGCTTGATCTTTCAAGCAATATGTTAAGTGGAAGCATACCTTCTTCAATAACCAATTTAACTGCCATTTCAGTTTTGTATTTTGACACCAACTATCTTGAGGGAACCATCCCATTTCCCTCAAGACCTGGTGAAATGCCTTCACTGAACTTCCTAAGACTCCACAATAACCACCTGAGTGGAAACATACCTCCCAGTTTTGGCTACCTGGTTTCCCTTCAAAGAGTTTCATTATCAAACAACAAACTTGAAGGAGCATTGCCTTCTAGTTTGGGCAATTTGCATTCTTTGACAGAGCTATACCTCAGTGACAACTCCTTCTCTGGCCAAATACCAAAATCAATAGGCCAGCTCTCTCAGCTCATAATGTTGAACATTTCCAACAATTTGATTCAATGGCCATTGCCTCAGGAGATGTCTTCCCTTCAAAACCTTCAGACACTTGATCTATCTTTCAACCCTTTGAGCCTCTCTTCCATTCCACCATGGCTTACAAGTATGTCATCTCTTTCCCGTCTTTACCTCGCAGCCTGTGGCATCAAAGGCCAAATTCCAGACTCATTGCAAACAACACAGAGTCCAATACAGGAACTGGATTTATCAGGGAACCTTCTCAGTGGACCAATACCATCATGGTTAGGATCCTTCAGTCAGCTCTACCTGTTAAACCTCTCAAGTAATTCACTTGAGTTACACATACCTGATTCCCTCACAAACTTGCCTGATCTTGCTGTTCTTGATCTTCACTCAAACAAGTTAACAGGCTCCATAACTGGAGTATTTAACACTGCTCAACAAGGTACTTCTGGGGGATCACTGACATACATTGATCTTTCTAATAACAACTTCTCAAGTGGAGTTGAGGCAATTGGTGTGGGAGAACAGTTAAACATTCAACATCTTAATTTGTCTCACAACCTTCTGAAGGGTACCTTGCCAGGTTCCCTTGGGAGGCTGAACTCCATTCACAGTTTGGATTTGAGCTTCAATGAATTAGCTTCCAACTTACCTGAAGTTCTGGCAAAGTTGATCTTGTTGGAGAGTCTGAAGCTGCAAAGTAATCACTTCAGTGGAAACATACCCAATGGATTTCTCAAGCTGAGAAAGCTGAAGGAATTGGACTTATCAGATAATGTACTTGAAGGGGAAATTCCAAAGGGTAAGCCTCTAATTGATTTTCCTGGGAGTACTTATTCTGGAAATAAAGGTTTGTGTGGAAAGCCTCTCAGTCCCTGTAAAGTTTGA

Promoter Sequence:
>Vu_27957::LG7:43086828-43088828(+)

TGCTTCAAGGGTAAGTGTTTCTCCAAAAATGAATTTGAATTTGATGTTCACCTTAAACTTTTATGATAAATATAGTTATGATAATTTTACTTTGTGTTTTTAATCTGTACAGAGTTATTGGTAAATCTCGCGGTCAACTAGTTCAAATTGTATATCCAAAGGTTGATTGTCATTTATAGTTATAATTCATTTTGTATGTTATTGAATGATCTAAATTATTGACGATTTAGTGCATCATTTTAGTGTAACCAGCAGCAGGATTCATGGGAATGTGGCTTCTATGTTATGTGTTGGATTAAGACCATCATTCGAGTTGCCATTACAGATGACTGGAATGAGGTAATGATGCATACCTTGAAGACATTACAAATCAAATTCAGCTTTAAACATATATGAAACCATAATGAATCTTTCTTCAATTTTGCAGTGCTTCAAGAGTACATCTCCTATACCAGAGGAAACGATTAGGCAAATAAGGCAGGAGTGGACAACTTATCTTCTGCAAAGATGGAGTTAGGAACAATTTTATTTGTTGTTGAACATTGATTAATTTTAGTTTTATAAGTTTATATATTGATAGTTTTGGTATTGGATTATTTTGTACATTAAGTAGAACTTTCTTTATATGAAACGCAAATATATTATACTATATATTGTTCTGGGACAATTTTCTGCTTTTCAGGTGTGGTTTTAATGCAAAAATAAATTCATTTTTAAAAAAAAATGCCAAGTAGACGTCGGTTAGTGCACAAACGGACGTCTATAGACGTTTGGCAGTGCACAAACCGATGTCCAAACCCGTAAATCCTAAACAACTCGTTCAGCCATATAGACGTCTGTTTGTGTCAGAACAGACGTCTATATAGACGTCCGGCCTGACACAACAGACGTCTGAATAACGTCACCCACAAAGACGTCGGGTGCAGGTCGGACGTCAAAAAGCCAAAAGAACAGACGTCTAAAGCCGTTTCTGCACTAGTGATAACCTCCCACAGTTGTAACCTTGTAAAACATACTATTATAATAGTTTGTGTATGGGTTGTTGTTAGCTTCACTTTTCTAGAATTTAGGAGGAAAAAGGGCGAGAGAATTTAGGTCCTCTTGAAATACATGTTTGAAACATATGGGTGTTCCATCAATCTTCAAAAGAAGCACCTAATTTGATCTTATTTTTCATTTTTGAAAAACTAAGATTTCTGTACAGTATATATTTATGTTATTTTCGCATAAGTGTTGCTTTCTGACTGATACGGTCTATGATAAATTATTATACTAGAAATTGGGATAATCAAACCATTAAAATAATGAAGTGTGCAATGGTGGAACAAAGAAGGCTCTCAAATTTAAGTAAGATTTTCACTTGAAATTTCAAATCATGACACAGATTATTCCTTGAAGTGATAGAAAAAATAACAATAACAAAAGCATCACCTCGATTTCTCAACATGTAAATCATAAAGGAAGAGTTTAGTGAGAAAATGGAATTTGACAAACTTCCAAACACCAAACCCTCAACATTATAATGTTAAAACTTACCATGTGCTTGGCTATCTGTCATGATTCAAACATAGAAGTTTGATTTTTAACTATTACATCACAACACCACAGTTGCAACTTCGAAATAGAGAACTCCTATATTTGGTTAAAAATCATACAGAGGAATCTGTCACGAAGGTTTGGTTTAATCCATATAGTTTACGCCTACGAGAATTATGGCACTAATCCAGAAAATCAAATGGGTCTGTCTATAGAATCTATCACTCTGAGTACTATTAAGGAAATCATGATTCAGAGAAATGTGCTTTCCAGCTTTGCAATTTAAAAGGGAAAAGTGGCCTAAAGGAAAGAAAAAAGATAGATCTGGAAAGTAATGCTACTTGTTTGAATCTGCATCCCGTGAAGACTGGACTATTTACAAATTTTGAAGGGCTTTTTCAGTTGCAAGAAAATATTGCTTAAGATAAGATAAGTAAGAGCCACTTCCATTGGGTTGAGCAACA

Gene Sequence:

>Vu_27957(+)