Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_27844 LG7 40353953 40355710 trihelix transcription factor GT-3b
Map

Annotations  
category   relationship type   keyword
Pathway   B 09158 Development and regeneration   C 04361 Axon regeneration [PATH:ko04361]
SNP Position Effect Amino acid change
T/G 40354500 intron_variant
T/A 40354617 downstream_gene_variant
T/A 40354676 downstream_gene_variant
G/A 40354740 downstream_gene_variant
C/T 40354949 downstream_gene_variant
C/A 40354962 downstream_gene_variant
A/G 40354963 downstream_gene_variant
A/G 40354970 downstream_gene_variant
G/A 40354975 downstream_gene_variant
C/A 40355001 downstream_gene_variant
C/T 40355051 synonymous_variant p.Ser158Ser
A/T 40355056 stop_lost p.Ter157Argext*?
C/G 40355067 missense_variant p.Cys153Ser
T/G 40355078 missense_variant p.Leu149Phe
C/A 40355082 missense_variant p.Cys148Phe
A/T 40355184 downstream_gene_variant
A/C 40355185 downstream_gene_variant
G/T 40355195 downstream_gene_variant
A/T 40355296 missense_variant p.Val114Asp
C/T 40355297 missense_variant p.Val114Ile
T/A 40355377 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_27844.1
MFGGGGEDALAARLGMVTPSLMNPATSLVISWEVSAAVREERGPAQPQWSQQETREFIAIRAEMERDFTASKRNKTLWEVVSSKMRERGFRRSPEQQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVYARPVSDADRVKSAAAEEEQRATEEWTISDEMRRLEENIGEEWREDEGLVAEADAEGAGANAEGAEANAEDVAEEEEKRQRQR*


CDS Sequence:
>Vu_27844.1
ATGTTTGGTGGCGGAGGGGAGGACGCGTTGGCGGCGCGGCTTGGCATGGTGACGCCGTCGCTGATGAACCCCGCAACGTCGTTGGTGATATCCTGGGAGGTGTCAGCGGCGGTGAGGGAGGAGAGGGGACCCGCGCAGCCGCAGTGGAGTCAGCAGGAGACGCGGGAGTTCATAGCGATACGGGCGGAGATGGAGAGGGACTTCACTGCGTCCAAGCGGAACAAGACGCTCTGGGAAGTGGTGAGTTCGAAGATGAGGGAGAGAGGGTTCAGGAGGAGCCCCGAACAACAACCTTTAGGTGAGGGATTGGAGAGCTGGCGTGGTTTCTACCAGAGTATTCGTCCAACTCAGATGGGGTTGTCACTGAATATTGATATGTCCTCCACTGCTTTTATTGAGCCACTGCCAGTTATAGATTTTGTTACCCAATTGCTGAATAGAGATGTTTATGCTCGACCTGTGTCTGATGCTGATCGAGTGAAGTCGGCGGCGGCGGAGGAAGAGCAGCGCGCGACAGAGGAGTGGACAATCTCCGATGAGATGCGGCGGCTGGAGGAGAATATCGGAGAAGAATGGCGCGAGGATGAGGGCCTTGTGGCGGAGGCAGATGCGGAGGGCGCGGGGGCGAATGCGGAGGGCGCGGAGGCGAATGCAGAGGATGTGGCGGAGGAGGAGGAGAAGCGACAGAGGCAGCGGTGA


Promoter Sequence:
>Vu_27844::LG7:40355710-40357710(-)
ATTACATTTATTTATTTTCAATTGTCATTTTTTCATATTATGTATTCTACTATTTATCTTAAAAGTATCTTATATCATTTAAATAAAAAAAGCATACTTTTTAAGTAGACATTATTTCAGCTTGTTAATCGATGACTATTAAAAGATAATGTAATGTATAAAAAACTAATATGTCATTATTAAATTTTATGTAGTAAAAGAAGTCAAAACAAAAGAGGAGTAACATATGTCTAAATTATGATAACAAAGTCTTATCTTACTTTATGTAGAATGGAAGAAAAGGAAATTTAATATATAAGTACAATGGGAACACGAAAACATTAAGGGTGATCACGAGGGTGGCGTGGCGAATTTAGTACCTTTTTATTCTCGAATGTAGTTCTAAAAATTAAAATTTACTACAAATACAAGAATTAAAATAATAAGAAATCATGTTATAAAAAATATAAAAGGAAATTCGAAGTTATAAATATATAATATTAATGCAAATATGTAGTTATATTTATTCATACAATCTTATGTAATCATAAAAAGTTATAGTAAAGGAGTTAATGAGTTATGGGACAGAGCCACTCACTTTCACGTTATTTAATAAAAATGTATTCACTAAACTTCATTAATCTGATAATGCAACCTTTTTCCGCAAGTCAGAAAAAAAAATGTAAAAATAGATTTAAATGACTCAATCCAAAAATACCTTTTTATAACGTCCGTTATAATAGATTGTTGATAGATAATGAAAATAAAACATATTATAACGTAATTTTGTAAATTAATTATAATATAAAACGTGATAACAAATTTGTAAATAAATTTAAAACATATTATAAAAATATTTTAAAAATAAGTTATAATATCTCCTCGTTTTTCATTTTTCACATTTCCCGGTTTCATTTCAACGTTCCCTCTCGTCTCGTTCCTGTGTCTCTAAATCTAAACCTGTGAACGCTCCTATTATCACGTTCCCCTCTCGTTCTCTCTCGTTCCCTCTCATCTCTAATTTCTCGGCACTCCTCCCTCCAAACACTCCGGGAACACTCGCCCGTGCTTTCACCAGCTCCAGTGCACCACTTCTGTTTTTTTGAGTTTTCGCATTTCCAAAACCCTAATCACGAATTCGGCTTTTGCACCAAAGTAGGCAAATATGCCTCTAATATTACCAAAATGGGCAAATTCAAACCATATTACGAAAATGGGGAAGTCGTGAGGGGCCCAAACGACTTCAAATGAAGAAGTCGTGCCCCTCCTGCACGACTTCACACTGTTCATAGCAACAGTGTTGAAGTCGTGCACCCCAAAAACGACTTCTGGGTCCTGTAATCGATTACCATTTTTTGGTAATCGATTATACAATGTTGAAATCCTGACCCCTGCAAGACTGAAAATGGACGAGCGTTCAATGCAAATGGACGAGCGTCCACTTCTCCTGCCGAGCGTCCACTTTTGGTGCAAGGCGGAAGAGACGCTCGTCCAGGCAGAAGCGGACGCTCGTCCAGGCAGAATAGGACGCTCGTCCAGCCAGGCAGAAGAGGACGCTCGTCCAGCCAGGCAGAGAGAACGCTCGTCCAGAAAGCTAAGAGGACGTTCGTCCATCTAGCTAAGAGGACGCTCGTCGAGATGCGCTCACTGGACGCTCGGCAGGAGAAGTGGACGCTCGTCCATTTTCAGTGAACGCTCGTCCACATACAGATCGTCCGCGCCCGGGCGCGCGATTCTTTCAGAAAGTTTCAACACTCTGTAATCGATTACCAAATCAATGTAATCGATTACAGGATCCAGAAGTCGTTTTTGGGATGCACGACTTCAACACTGTACCTATGAACAGTGTGAAGTCGTGCAGGGGGGGCACGACTTCTTCTTTTGAAGTCGTTTTGGCCCCCCACGACTTCACTTTCGGTCAAATTTTGCCTATTTTGGTAATAAAGAAGGCATATTTGCCTACTTTGGTGCAAAAGCCCACGAATTCACATTGAAACCACATTGGGGTGGTGAAGAGGTCA


Gene Sequence:
>Vu_27844(-)
ATGTTTGGTGGCGGAGGGGAGGACGCGTTGGCGGCGCGGCTTGGCATGGTGACGCCGTCGCTGATGAACCCCGCAACGTCGTTGGTGATATCCTGGGAGGTGTCAGCGGCGGTGAGGGAGGAGAGGGGACCCGCGCAGCCGCAGTGGAGTCAGCAGGAGACGCGGGAGTTCATAGCGATACGGGCGGAGATGGAGAGGGACTTCACTGCGTCCAAGCGGAACAAGACGCTCTGGGAAGTGGTGAGTTCGAAGATGAGGGAGAGAGGGTTCAGGAGGAGCCCCGAACAGTACAAATGCAAGTGGAAGAAGCTCGTTAATCGCTATAGGAAGATCATTTTATTCACCCGATCTTGGAAGAAGACAACCTTTAGGTGAGGGATTGGAGAGCTGGCGTGGTTTCTACCAGAGTATTCGTCCAACTCAGATGGGGTTGTCACTGAATATTGGTAAGTAACACCAAAATTTGGATCCATCTTTCTTTAATCCTTTATTCATTTTTATTAAACCCGTTATATCAAATAAATTTTATAATCTAAATAGTTCCTTTGGATATGCAGATATGTCCTCCACTGCTTTTATTGAGCCACTGCCAGTTATAGATTTTGTTACCCAATTGCTGAATAGAGATGTTTATGCTCGACCTGTGTCTGATGCTGATCGAGTGAAGGTTAGATCTTGTAGTGTCCTTTTTGATATTGCCATCTATGATGAAGATTATCTTTTGGTTTGATTAAACTACCTACTATTTGTTTAACACGATAGTAATGCACCACAGCCATACAGAAATAAAGAGAACATGAGCAGCAGAGTGTTGGAAGTTTCAAAGCAAAGTGACAAAGGGAAGAGAAAATCTGGACTTCCAGAGGCCCCAACTAATCTGTTTGATGATAGCAAATGAGGCTTATCAACATGCACTAGTACAAAATATACTTTTAAACTCGCACAATAGACCTCTTTTTATACAAAACCGCTGTCTATTCAGACACGGTGGCAGTTTGCTAATTAATGAGACATTATAGGCCTCGGTTCAGACGAGACCGGTGTCAAAAAGAGATATTACTTCGGTTGTAAAGACAACCGGTGCCTAAATATTAGTGTCTGACGCAGTTTCTGACGCGGTTAAGAGGAACCCGAGGTGAAAGAACTATACGACACCGGTTTGTGGGAAGGACCGAGGCATAAGCCTCTACTGCTCAGACCCGAGGCATATAAGCCTCTCTTTTTTTCCCCAAAATTTTCCCCAACTTAACCTAATCTCCCTCCGCACTCTCGCCTCCCCTGGCTCTCCCTCCCTCCCTCCCTCCCCTGGCTCTCGCCTCGCCTCCCCTCCCCTCGCTCTCGCCTCCCCTCGCTCTCGCCTCCCTCCCCAGGCTCTCGCCTCCTCTCGCTCTTGGATTCTTCTCTCCCTCCATTCCATTGCCGCTTCTTCCTTACCCCCACGAACCTCCCACAACTAAACCACACCACGCCACTGCCAGCCCCAGATCTGCCACCGTTTCCGTAAAGAGCACCCGATGAAGAGGAAGGAGAGGCATCGCGCAGTCGGCGGCGGCGGAGGAAGAGCAGCGCGCGACAGAGGAGTGGACAATCTCCGATGAGATGCGGCGGCTGGAGGAGAATATCGGAGAAGAATGGCGCGAGGATGAGGGCCTTGTGGCGGAGGCAGATGCGGAGGGCGCGGGGGCGAATGCGGAGGGCGCGGAGGCGAATGCAGAGGATGTGGCGGAGGAGGAGGAGAAGCGACAGAGGCAGCGGTGA