Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_27818	LG7	39532425	39534035	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/T	39532442	missense_variant	p.Arg6Ser
C/T	39532446	synonymous_variant	p.Leu8Leu
T/C	39532450	missense_variant	p.Leu9Ser
T/G	39532560	missense_variant	p.Leu46Val
T/C	39532561	missense_variant	p.Leu46Ser
G/A	39532771	missense_variant	p.Ser116Asn
T/A	39532838	synonymous_variant	p.Thr138Thr
G/A	39532920	missense_variant	p.Gly166Ser
T/C	39533085	synonymous_variant	p.Leu221Leu
G/T	39533316	missense_variant	p.Ala298Ser
C/T	39533324	synonymous_variant	p.Pro300Pro
T/C	39533447	synonymous_variant	p.His341His
G/T	39533487	stop_gained	p.Glu355*
T/G	39534029	missense_variant	p.Ser535Arg

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_27818.1

MEDINRWLLSSYLNESVDHEFAIRRYCPARMEQEQGGECQDQEGVLFDDTELCYSDASTPCLASSEVDDFVDSFINMDQYEKADKGHQEKHQSFGHFVVMNNDEDEVDADEYSSMSGVFGYLPATMEDSELEMYENLTMLEEEVAMSDSFGTLPEFVHCGKEANLGVEQGLELVHMLLACAEAVGCRDNHQAELLINRIWALASPSGDALQRVSYCFATGLKCRLSKSTFMDMPLINRENKLEAFQLLYQITPYIAFGFMAANEAIFQASQGKSSIHIVDLGMQHTLQWSSLIRAFVARPEGPPMVRITGLTDNEDNSKLQTSMNVLVQEASSLGMHLEFHTISEPASPSVFTVEKLNLRKGEVLFVNSILQLHKYVKESRGNLKEILVSVKKLGPTAFTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEACMPRNSQQRMKIERLHFAEEILNIVAYEGPERIERHERVEQWRRQLGRAGFQVMPLKCTSQVRMMLSVYDCDGYTLSSEKGNLLLGWKGRPVIMSSAWQVASV*

CDS Sequence:
>Vu_27818.1

ATGGAAGACATAAACAGGTGGCTATTATCCTCTTATCTGAATGAAAGTGTTGACCATGAATTTGCCATCAGAAGGTATTGTCCTGCAAGAATGGAGCAAGAGCAAGGAGGAGAGTGCCAAGATCAAGAGGGAGTATTGTTTGATGATACTGAATTATGTTATTCTGATGCCAGCACTCCTTGTTTAGCTTCATCAGAAGTTGATGACTTTGTTGACAGCTTCATCAACATGGATCAGTATGAGAAAGCAGATAAAGGGCACCAAGAGAAGCATCAAAGTTTTGGCCACTTTGTGGTGATGAATAATGATGAGGATGAGGTTGATGCTGATGAATACTCCTCCATGAGTGGTGTCTTTGGATATCTTCCAGCCACCATGGAGGATTCAGAGTTGGAGATGTATGAAAATCTGACTATGTTGGAGGAAGAGGTTGCAATGAGTGACTCTTTTGGTACTTTACCTGAGTTTGTGCATTGTGGAAAAGAGGCCAACCTTGGTGTGGAGCAAGGGTTAGAGTTGGTTCATATGCTGCTGGCCTGTGCTGAAGCTGTGGGGTGCAGGGACAACCACCAGGCAGAGTTGCTGATTAACAGAATCTGGGCTTTGGCAAGCCCTTCAGGAGATGCACTGCAGAGAGTTTCTTACTGTTTTGCCACAGGATTGAAGTGCAGGTTGTCAAAAAGTACTTTTATGGATATGCCTTTGATCAATAGGGAGAATAAGCTGGAAGCATTTCAACTTCTTTACCAAATCACACCTTACATTGCCTTTGGTTTCATGGCTGCAAATGAAGCCATATTCCAAGCATCACAAGGAAAGAGCTCAATACACATTGTTGATTTAGGAATGCAGCATACCCTTCAATGGTCTTCTCTGATCAGGGCCTTTGTTGCAAGGCCCGAAGGACCTCCAATGGTTAGGATCACTGGCTTAACAGACAATGAAGATAACTCTAAACTTCAAACCAGCATGAATGTGCTTGTGCAGGAAGCAAGCTCTTTGGGAATGCACCTTGAATTCCATACAATTTCTGAGCCTGCATCTCCTTCAGTTTTTACTGTGGAGAAGCTGAACTTGAGAAAAGGTGAAGTTTTATTTGTTAATAGTATCTTGCAGTTGCACAAGTATGTGAAAGAGAGTAGAGGCAATCTGAAGGAAATTCTGGTGTCAGTGAAGAAGTTAGGTCCAACTGCTTTTACAGTGGTGGAGCAAGACACAAACCATAATGGCCCTTTCTTCCTTGGGAGATTTTTGGAGTCCCTTCACTATTACTCAGCCATATTTGACTCTCTTGAGGCATGCATGCCAAGAAACAGCCAACAAAGGATGAAGATAGAGAGATTACACTTTGCAGAGGAAATTCTGAATATTGTAGCTTATGAGGGTCCAGAGAGAATAGAAAGACATGAAAGGGTAGAGCAGTGGAGAAGGCAATTAGGCAGAGCAGGATTTCAGGTGATGCCATTGAAGTGCACAAGCCAAGTTAGAATGATGCTTTCTGTTTATGACTGTGATGGCTACACATTATCAAGTGAAAAGGGAAACCTTCTACTTGGATGGAAAGGAAGGCCAGTAATTATGTCTTCTGCATGGCAAGTGGCAAGTGTTTGA

Promoter Sequence:
>Vu_27818::LG7:39530425-39532425(+)

TTAATAAGTTTCAATGTTTGAATTAGATTGCAATGTTTGAAATTTTGGATCAATTATTGATTCAAGGTACTGAATTAACTAAGAACTCCCCAACTATGGAATGGAACGGCTGAGTTGGAGATTTGTTTATGAATGTACTATGAAATTCATATTTTTAACTTCAATGGCAAATGTAAGTAAAAATAAAATAAAATACTAAAGTAGTTTTTGATGAAATATTATAGATAACCAATGTTGATATGATTTATTATTGTTTTTTATTTTCTTTTTAAGATCACGTAACCTTTTATCTAAACATCTTACCATTATTTTCTTAACTTGATTAAACTAATACTTAAGGGTGTTGTCTTGGTATCCTTTTAGAATAGAGAGTTTTAGTATCCTTTGAGGTGGATCTAATGAAGAGATGCCATATGTGAGAGGAATCTGTCAAATAATAATAATTAATAATAATAATTAATAATAATAATATCATTATTATTATTATTATTATTATTATTATTAATTATTATTATTATTTTACACCCGTAGGGACTTTGCCTCTTCATTCGAATATGAAGATGTTGTTAAAGCCTTCTTTTTTCACACCCACGTAGAATTTCATCTCTTATGTATCATAATATAGTAAGGTTCACTTAGTTGACATTGAATTAAAAGTGTTACATATATGTCGGGTTTTCACTATCCATATCAAAGGATGCTAAAATCCTTATTTTTTAGGGGCACAAAATTAACACTCAATATTTAAAGGTCTAATTAAAGTAAGTAATTATCATCCATGAGTTTAACTAAATATGCACTTGTTAACACATTAAAAAAAAATAGTACATAAAAGTTTTTAATTCAAAGGGATTTATGGAGTAAACGAAGATAAAAACCTAAATTTTTAAATTTCAGTCTCCACTCTTTTTTAGATATTTCCTTCATCAAACTTAGTTGTCAATTTTTTTCGTTAACAAAATATGTATAAGTTTCTATAATACAAAATTAACAATAAAAAATCACACAGAATTATTATTATAATAAGACTAAAATTATATGAAAATTGAATATAAAAGAACCTAAAGTTGTAATTATCAAGAAAATGAGTCTAAATCTTATTTTAAATGGAAATGAGAAAGTTAAATAATAACGTATAAAAAAAACTCAAACTTATTGTTTTAAAGTTAAATAATAACGTATTTGTATTTTTTCATTGAATCTCCTCAAAGGATACATCACTGGTATCAAAACTGAATATACTTAAAAATATTAATATGAAGAGACTTACATTTCAAATAAAAGAAATTTTTATGAATCCAAATATGAATATAAATCATAAATAATCTATTATCTTAAAATTTTAGGTTTTGAAGCAGTATCAGCTCCTAAGGACCCTACTCAAGTCTTCTTCACTTAATCTAATTGACTATTTTACATATGCAACAATATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAGAAAAGTATAATGAAAATGTTTCGTGGAAAAAAACAATAGGTAAAAATTGAGAAATGGTCAAGAGAATATTTTATTCTGAAAGAATTGTACATAGTGTGTGGCACTGTTGCAAAGCCTCCTCGATAGAATCTTCAGTAGATGACAACTAACCAAAAAGCCATAGCAGAACGAACTTTTAGCAAACGCAAAAACAATAAAGAAAGGGGAAAAATGTTGCATGAACATGTTGAACTGGAAATTCTCAATTTATTTCAAAAATAATAAACTATGTACAAGCAAGTTTTACTCACAGGCTAAGAGAATCAAAGTATCATTCTTCAATAATACCCCTTTTGAATAGTGTTTATTATGTATCTTGCTAGCTACTTTTGAAGCATTTTAAAACACAAAGTGTGTGGGAAGTCTCTTTGAAAAAGACAACTAAGGTCACAAATCACTCTAATCTGATCCTTCTTCCCATTCTTTTTTTCCAGATTTCAAGCACCTCAAGTAACAA

Gene Sequence:

>Vu_27818(+)