Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_27612	LG7	33015879	33017093	PREDICTED: transcription factor MYC2-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of gene expression, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus, cytoplasm
Molecular Function	enables	DNA-binding transcription factor activity, protein dimerization activity, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
G/T	33016591	missense_variant	p.Arg238Met
C/T	33016789	missense_variant	p.Ala304Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_27612.1

MKGKIREFIDSASSSVFSNTNALQQRLQFILQNRHERWVYAIFWQATKDSDSRLTLEYGDGLFMGGKGREGTEVRMSEEQTRNNVNDIEWFYRVSQTRSYAAGDGVVGCAFGSGVDVWLSGVKQFEVNECDERVGEARRHGIQTLVCVSVARGILELGSDEVLKLDYGVLQMVKSVLEERESGSENPVSKQWVVPGKEEETERRRELEGSSTDSSGPSDHDAEGNNNNVPMMGRRVGRVREALPVNHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVDYINELKVKIGSLQAAFQAKQEAPAEQVQPQSIPAPSSATTDMRVEVQILGSEAMIRVQSLNVNHPSARLMDALRDVNLQVLHATISNIKEMMLQDVVVRVPHDLTTQEALQTAIMHRL*

CDS Sequence:
>Vu_27612.1

ATGAAAGGGAAGATCAGAGAATTTATAGATTCGGCATCCTCATCGGTGTTCTCAAACACAAACGCGCTTCAGCAGCGCCTCCAGTTCATTCTGCAGAACCGTCATGAGAGGTGGGTGTATGCCATATTCTGGCAAGCCACCAAAGACAGCGACTCCCGTCTCACACTGGAATATGGGGATGGCTTATTCATGGGCGGAAAGGGAAGAGAGGGAACGGAAGTCAGAATGTCGGAGGAGCAAACGAGGAACAACGTGAACGACATCGAATGGTTCTACAGGGTGTCGCAAACTCGATCGTATGCCGCCGGGGACGGTGTGGTGGGGTGTGCCTTCGGCTCGGGGGTGGATGTTTGGTTGAGCGGAGTAAAGCAGTTTGAAGTGAACGAGTGTGACGAGAGAGTGGGGGAAGCAAGGAGGCATGGGATCCAGACATTAGTGTGCGTGTCGGTGGCACGAGGGATCCTTGAACTGGGTTCGGATGAGGTTCTAAAGCTGGATTATGGGGTTCTGCAAATGGTGAAATCGGTGTTGGAGGAGCGGGAGAGTGGGAGTGAGAATCCGGTGAGCAAGCAGTGGGTGGTTCCCGGCAAGGAGGAAGAAACAGAGAGGAGAAGAGAGTTGGAGGGATCGTCGACGGACTCTTCAGGGCCTTCTGATCATGATGCAGAAGGCAACAACAACAATGTTCCCATGATGGGAAGAAGGGTGGGGAGGGTACGTGAGGCGCTTCCCGTAAATCACGTAGAGGCCGAGAGGCAGCGGCGAGAGAAGCTGAATCAGAGATTCTATGCTCTTCGCTCCGCTGTCCCAAACGTGTCCAAGATGGACAAGGCCTCCCTGCTTTCGGACGCCGTTGATTATATCAATGAACTGAAGGTCAAAATCGGCAGCCTCCAGGCTGCTTTCCAGGCCAAGCAGGAAGCTCCGGCAGAGCAGGTCCAACCCCAATCCATTCCCGCACCCTCCTCTGCAACTACTGACATGAGAGTGGAAGTTCAGATCTTGGGGTCCGAGGCCATGATAAGGGTCCAGAGCCTGAACGTTAACCACCCCTCTGCTCGGCTCATGGATGCTCTCAGGGACGTCAATTTGCAAGTTCTTCATGCCACAATCTCCAACATCAAAGAGATGATGCTGCAAGACGTCGTCGTCAGAGTTCCCCATGACCTCACCACCCAAGAGGCCCTCCAAACTGCTATTATGCACAGACTTTGA

Promoter Sequence:
>Vu_27612::LG7:33013879-33015879(+)

AAGAGGAAGAGACCGCGAGAAATGGAGGAAGAGGAAGGCTGGCCTCGAGAAATGATGCATTGTAGAGAAGAGAGAAAACAGAGGTTCAGCGGGAAGAAGCACAGTGAAAGGAACTTCTTTTGCGAGAGGGGGAAAATAAATCAAGCTACTGCCTCAAGTATTCACTTAACTGAGGTAATACACAACTTACTGCCTCGATTAGTTACTTAAACGATCCTTAAATGTTTAACCGAATGGCAATTTTGAAAATAAGTAGAACCTATAAGCTTCGGTTCTCTAGTAAAACGAAGCAAATAGCTTATGGCATCGGTTCCCCTAGAACCAAAGCAGTCTCTGCTTATATTAAATGATTTTTAAACGTTTGACAAAGGGAATTTAAAATCTTCACAGTCAGAGTTTGCAGGTTTGGCAGTACATACTGCCTCAGTTTGGTTATTAACCAAAGCAGTAGGCCCGTTCTGAAAAAGGTGGCAGAGTAAAAGTCTGACTTGAAAAAGAGACAGGGCCTTGGGCAGGGTATAGGCATCGGTTACTCCTAGAACCAAGGTAATAGCCTCTTTCTGAAAAAGGTGGCAGATGAAAAGTCTGTCTTGCAGAAGAGAGAGGTGCCTTGGGCAAGGGTATAGGCATCAATTACTCTTAAAACCGAGGCAATATTACCTTTCCGCTTCGGTTCCCTTTGAACCGATATATATAACTTCGCTATTATTACATAAATGTCATCGCGTTTTTATATGCTTCGATTTTTATACAACTGAAGCGCATAGGACGTGTTGGAAAACAATTCTTTTACTAGTGTTACAAGACCACACATGTTAATATCCAAAAACTTTTAATGAATTCTAATTGAAAGATGGTGAAATATCAATTTTATGCAAGATAATCTAACCAGATAAGTGTTAAAACATATGTAAATTATAGGTAAAATAAGCACTTTTCAATATTAAATTTGTTAACTCAAGTGATTATTTAGCACTTATTTTCACTATGTTTATGAGACCTAAAATGGATTATATTTATAAGTATACATGATTTATAGGCACTAACTTAAATATAATTGTTAGATATAGTTAACGTACTATTAGATATAATTAATTATTATATTATTTGCTAATTTTAAATGTAAAGGATTACACTAATAACTTTATATTTTCTATATAAATGCATAATTCTATATATGTTCTCAATACACATCATATATTCATCCCATTTTTTTTTTCTTTTATTTTAACAATTCCAAATTTCTAGACGTTTTCCTAAATCGTGACGCTAAGTAGCCTCCAACCTTAAGCCATTTTGGATGTAAAGATTGCATTTAATAACTTTGTCTAGAAATATTCACCATAGCTAAGCTGCATGAGCAAGAAGGAAGTTCCCCTTCAGCTCATCTCGTACGTGTATCATTGACCGTTGGATCTCGGTCTCTATCATCTCTCTCATATCAACAGCATTTACGCAATTTTAACACAATTTTTGTAAATAACCATTTGTCCAAAATCAACTGTGCTTGAGGACACAGACGGCATGCCCGAGTTTCGTTTCCTCCGCTGTTAAAGAATCAAAATATTACCAACACACCACCGGTGATGGTGATGGTGATGGTTTAACAAAATGTCACAGGAAAGGAAAGAACGAAGATTTATATTTAGGTGAAAAAAATCAGTGGAATGTATGATACAATACATCGAACTCAGTCACATACTTTAGCAGTCAAATTTTGTGTGCACACGTGAAACTGGCGCAGCATAGTTACTGAAGACAACTTCCAGCGTGGATAAAGTATTCAAAGAACCCTCCCTTTAATTCCCATTGCTCATCTTCTCTAGGAAAGGTTCATTCACACAGCTACAAGGAAATTTATTCTAGTTGTTTTTCTTTGTCCGAGACTTTGTTGTTTACATCGGAAACTTTAGACATTATTGTATCTGAGTCAGTTGGGAAGGACTCGATTTAATAAGGTAGTATCAGCAAAGTGTACAAAGAAACTGAGTAAGAGAAAA

Gene Sequence:

>Vu_27612(+)