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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_27485 LG7 29219364 29222867 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 29219714 upstream_gene_variant
G/A 29219786 upstream_gene_variant
A/T 29219824 upstream_gene_variant
T/C 29219850 upstream_gene_variant
A/G 29219870 upstream_gene_variant
A/C 29219894 upstream_gene_variant
G/T 29220014 upstream_gene_variant
C/T 29220032 upstream_gene_variant
C/T 29220033 upstream_gene_variant
A/T 29220036 upstream_gene_variant
C/T 29220063 upstream_gene_variant
T/C 29220126 upstream_gene_variant
G/A 29220132 upstream_gene_variant
A/T 29220166 upstream_gene_variant
C/T 29220176 upstream_gene_variant
T/A 29220194 upstream_gene_variant
T/A 29220286 upstream_gene_variant
C/T 29220342 upstream_gene_variant
G/A 29220405 upstream_gene_variant
A/G 29220499 upstream_gene_variant
G/T 29220533 upstream_gene_variant
A/G 29220534 upstream_gene_variant
C/T 29220547 intron_variant
G/A 29220573 intron_variant
G/C 29220607 intron_variant
C/T 29220632 intron_variant
T/A 29220787 intron_variant
C/T 29220934 intron_variant
C/A 29221074 synonymous_variant p.Arg339Arg
G/T 29221099 missense_variant p.Ala331Asp
G/T 29221400 missense_variant p.Leu294Ile
G/A 29221581 intron_variant
C/G 29221773 intron_variant
T/A 29222070 intron_variant
A/T 29222429 intron_variant
G/T 29222432 intron_variant
G/A 29222440 intron_variant
T/A 29222820 synonymous_variant p.Gly16Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_27485.1
MKYIRSNSLKRLFSFGKRGFGEENNVGLVAPSCEEHPLRPSWKCFSFEELFDATNGFSSGTLKGFNLQLQLSYGYIFITDIMQNFKSLDVGHRNLVGRGGYAEVYKGTLRGGEEVAVKRLTRTSTDERKEKEFLIEIGTIGHARHANVLPLLGCCIDNGLYLVFELSTVGSVASVIHDENLPPLDWRTRYKIALGTARGLHYLHKGCKRRIIHRDIKASNVLLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEILSGRKPVDGSHQSVHSWAKPILNKGEIEKVVDPRLGGAYDVTQFNRVAFAASLCIRASATCRPTMSEVVEVMEKWEIDKEKWEMAEEKEQEVELWGFDDLEYAHDTSFSMSPPDSVAST*


CDS Sequence:
>Vu_27485.1
ATGAAGTATATACGGAGCAACAGCTTGAAGAGGCTTTTCTCGTTTGGAAAACGCGGGTTTGGGGAAGAAAACAATGTTGGGTTGGTGGCTCCTTCGTGTGAAGAGCACCCTCTAAGACCCTCTTGGAAATGCTTCTCCTTTGAAGAGTTGTTCGATGCCACCAATGGTTTTAGCTCAGGTACTTTGAAAGGTTTCAACTTGCAGTTGCAGTTAAGCTACGGTTACATTTTCATCACTGATATCATGCAAAACTTCAAAAGCCTTGATGTCGGGCACAGGAATTTGGTTGGGAGAGGAGGGTATGCAGAGGTTTATAAGGGAACGTTGCGTGGTGGTGAGGAAGTTGCGGTGAAGAGGCTCACCAGAACTTCAACTGATGAGAGAAAGGAGAAGGAGTTTCTGATAGAGATTGGCACAATTGGTCACGCGCGCCATGCCAACGTGTTGCCTCTTCTGGGGTGTTGCATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACCGTCGGTTCTGTTGCTTCTGTTATTCATGATGAGAACTTGCCTCCTTTAGATTGGAGGACAAGGTACAAGATAGCTCTTGGGACCGCACGTGGTCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATAATTCATAGGGACATCAAGGCCTCAAACGTTTTGTTAACAGCAGATTTTGAACCAAAGATATCTGATTTTGGACTAGCAAGGTGGCTTCCATCTCAGTGGACTCACCACTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCAGAGTACTACATGCACGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTTGAAATCCTCTCTGGAAGGAAACCAGTGGATGGATCTCACCAAAGCGTGCACAGCTGGGCTAAACCAATACTAAACAAAGGGGAGATAGAAAAAGTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGAGTAGCCTTTGCTGCCTCCCTGTGCATTCGGGCATCTGCAACTTGCAGACCTACCATGAGTGAGGTGGTGGAGGTAATGGAGAAGTGGGAAATAGATAAAGAGAAGTGGGAAATGGCAGAGGAGAAGGAGCAAGAGGTGGAGCTATGGGGTTTTGATGATCTGGAATATGCACATGACACTTCCTTTTCAATGTCTCCACCTGACTCAGTTGCAAGTACTTAG


Promoter Sequence:
>Vu_27485::LG7:29222867-29224867(-)
ACAAATTTTTAATACAAGTAATACGTGTCATTTTTAAAGATATAAATAAATGCATTGACTTTTTTTAATTATAAATATTACAATGGCTTTTTTTCGAAAGTTTACAAGTGTAGAATAATTTGGGTTTTCTGTAGATTCAGCATGAAACTGTTCCATGTGCTTCAGTCCAGATTCAGTTGAAACTTTAAGCACATATGACAAAACCTAACCAAATAATTCTCAATGAAAGCGACCTATTTATTGTGGAGAAAACAAACTACTTTATCTTCATCAAGAAGAACATTAAAAATAAGAAAACAATAAAATTAATTTAAATTCTGATTTTAAACTAAAATTTTTAAAAATATTTGAGAAAGCTTTAACAAATTAATTTATGCATTTTCTTTCTCTTTTATATCTACTTCTTACATTTTTTTTATGAAAAATTTGTGAAATATATCTTAATTAAAAGAAAAATCTACTGAAAAAGAAACGTGAAATAGTACATCTAGAAGAAAATAATTGATTGTCTCTTTGAATGTTGGATGAACTATAAGACCTAACCATTCATAAAAGAAAGTACTTAAATAAAACACATTGCCTTCACTGTTTTATAAAAATTGAAGTTAATTTCATGATAAGAATATATGTAATTGTAGACGTCTGTATAAAAAAAATTATCAATGCTTACATCTTCTTTTGAATTAAAATTTTAAGTTCTCATTGACATACTTAAAGTTACCATTTTAAAGATCGAGTAAAAGAATTTCACTTACACATTAATTTTGATACATAATGAAGTTTCCCTCCAAATTATAGTTCCATTTTCATTCCAAAAACCCATGAATATGAATTCACATTTTGAAATTTGAAGTTAATACGCAAAAAAAAAAAAGAGAGAAAAAGAAAAAGAAAAAGCAAATAAACTTGGTATTAAAGGTGAACAAATTACGTCACTAATTGATGAACTAATTAATGGAATAAGAATCTCTCACTTTTTAGTGGGGACTGATCAGATTAGCATACAGATCACAACTTTGTTACTATATTTGTCGCAACATGGTTCTACAATCAGAAATTTTACCTAATTCAAATAGTCTTAAGTTGGAGAAATTTATTTATATTCTTAAATCATCATGCTTAGCCATATATAAGTGCGTAATCATAAATTAGAAAACAACAATTTGAGTTCTCAATGTCAGATAAACTTTTAATAATTAAGCAATAAATGAAACTTTCTCCTTAAATAGAAGCAAACCTGAAAGTAGGCTCATCATTATTCCCTAATGGAATCTTATAAGAATGAAAAAAGGGCCATGATCCAGTTAAACGGATATAACATGAATATTTTGTTTAGAAATATCCAAAATTTTAACACGGCTAGGTTACATGAAAATATGTTTTTGTTATAATAAAGCTAATTAACATGATAGGTATTTCATATAGTAAAAAGTAAGATATTTAAAACTTTATGCTTAAATAAATAATGAGTTATAAATGTTTTTTTTAATATTACTTTTGGGTATTTTTATTTAATAAAAATCAGATAGAAATTTCATAACACAATTTTAAGATCTCAAAATCAAATTTATTGATACGATTAAATAGGAATCTTGACAAAGATTGTCTAAAATATTAAAATAAGAACATATTTTTATGATTTTTGTTTTTCTTAAAGAATACTTAGCAGCAGTTGCTTTTTGTTGGGTGTAGCAACATTTTTTGTCATGTTCTAACGTGTCAGATCTGTTGGCTTCTGTTGCTGTATACGTCATGAAAAAGAAAAAGGAGGCTCTATCATTCCCTGTTTATACGAGACAGCGCATTTAGTAGTAGCTAACGAACTCCAAAATACACATGCACTGCACTTATTCTCTCTTCCAAGCCCTTTTTCATTCATTCTCTCTTCACTCTCACGAAACTGCGTTGTTCTCTTTCATTCACGTCACAAGAACAACAACTTGTGTTCTCTGTTTCTGCTCTTCGTGAAAAACAGAGTCCCCTGTTTGGTGCCTATCGCA


Gene Sequence:
>Vu_27485(-)
ATGAAGTATATACGGAGCAACAGCTTGAAGAGGCTTTTCTCGTTTGGAAAACGCGGGTTTGGGGAAGAAAACAATGTTGGGTTGGTGGCTCCTTCGTGTGAAGAGCACCCTCTAAGACCCTCTTGGAAATGCTTCTCCTTTGAAGAGTTGTTCGATGCCACCAATGGTTTTAGCTCAGGTACTTTGAAAGGTTTCAACTTGCAGTTGCAGTTAAGCTACGGTTACATTTTCATCACTGATATCATGCAAAACTTCAAAAGCCTTGATGTCGGGCACAGTTAGTCCTTGGTTATGGCCTTGCGATATTGTGAGGACTATGTTCATTGTAAGAAAAATAATATGAAAAAAGTAGACATGTTGCAATCTTAGAAACTCTAAAAGCCTTGAAGTTGGCTCAAATGAAGACCTTTGTTCAAAGCCATGATATCAGTCTACCGTTTGTGCTTGATATACTAAGCTTCTTTGTTTTGACTTTTTTTTTTCTCTTGTTTTGCAGGGAATTTGGTTGGGAGAGGAGGGTATGCAGAGGTTTATAAGGGAACGTTGCGTGGTGGTGAGGAAGTTGCGGTGAAGAGGCTCACCAGAACTTCAACTGATGAGAGAAAGGAGAAGGAGTTTCTGATAGAGATTGGCACAATTGGTCACGCGCGCCATGCCAACGTGTTGCCTCTTCTGGGGTGTTGCATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACCGTCGGTTCTGTTGCTTCTGTTATTCATGGTACATTAATAAAATCCAACAAAAACGAAAGAAACAGAAAATGAAAAAAGCATTTCTTTTTTCTGTATCTGTTTTGGGCTGCAAAATTCGTCATATGATGCTGTTTTGCAGAAAAGAAAAAAGAAAAGATGTTAATAATTAGTGTGTGGATGTTCCATGTAGATGAGAACTTGCCTCCTTTAGATTGGAGGACAAGGTACAAGATAGCTCTTGGGACCGCACGTGGTCTTCACTACTTGCACAAAGGCTGCAAGAGGAGGATAATTCATAGGGACATCAAGGCCTCAAACGTTTTGTTAACAGCAGATTTTGAACCAAAGGTTCTTCAATTTGTACTCTACTTGTGTTCATCAGTTCAATCTGTGTCTCAACAACAGATAATTTGGTAGCTTTACTCTCTTTTTTTAATTGAATTTTGGCAGATATCTGATTTTGGACTAGCAAGGTGGCTTCCATCTCAGTGGACTCACCACTCAATAGCCCCAATAGAAGGGACATTTGGGTACCCTTTGTTTTCTACTTCCTTAAATGATTGCCAATTTTCCATCATATAAATGTAGTATTATATCCATGTAAATGGGAATTTGTTACTATATTTTGTAGGCATTTGGCACCAGAGTACTACATGCACGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTTGAAATCCTCTCTGGAAGGAAACCAGTGGATGGATCTCACCAAAGCGTGCACAGCTGGGTATTATCCCTATTGATCTCTGACGTTGAAACTCTTGTTATTTAAGCACTTAATTCTAATTGTCGTGTTTCATGCAAAACCCCACATTTGGTTTGGTTGGTCTAGATTTAGGCTAGACTAATGGTGAGCATGTTTAGTGTTACATTACATTGTTTAAACATTTTTGCTACTTTGACTTGATACGTAGGCTAAACCAATACTAAACAAAGGGGAGATAGAAAAAGTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGAGTAGCCTTTGCTGCCTCCCTGTGCATTCGGGCATCTGCAACTTGCAGACCTACCATGAGTGAGGTACCTCAAACACATTTGTTGCTCAACTTTCCTATCACTTTCACTTTCCTCAAATCTTATGTAAAGCTTCATTTTAATCCTAAAACTATATTCTCTTTTGTTTCTCGTCAATGGAAATTTATCAGAGGATGTTTGCATTCAGGTTTTACAACTTTCTATAAAGTTCAATGTAACTAGAAAAAATACTGGAGGATTCCAGTTGAATGCTTGTTTCAACTAAAAAATAAACACATTATTTCCATTATCAGTCTTGATTTATAAATGCTACATGAAAAAGAGACTAAAACTGAATATTGTCTTATTTATAAAAGACTAGAAACATATTTAATTAGTTTTTAAGAATAAAATAATCTCATTTACAATATCGGTGTGTTCTTTTTAAACTTTTTTATTTATTTGGTTAGAGTTGGATTACCTTTGTCCTTTTGGCTCACAGTGTTCAAGTCAAAGGAAAGATTTAGCCCTGACTCTCAAATTCAACGTTACTAATGTGGCAATTACTGGTGTCTGTGGCTGATAACATTTTAATATTGATTTCTTTTATTAGTCACTCTTATTTTGTTGTCTAACAGGTAATCACCATTATTTTTATTTCTTTTTTTCTCTGTTGAAACTAATCAATAACTTGTTTTGTTCATCAGACTAGGATAATAACTGCCACTGGTGTAACCACCACAGCATTGTATACACTATTTAATGTTTATAAATAAACTATATAACTATTATGTGTTATGTAATGCTTTATAGGTAGAACAGTCTGTGTCTGTGACTGGTCCCCCCCTCCTCCCATGCCTTTCTTTAATCAGTACAACGAAATTTATCTAAGTCTCATGCTGCAATTAAAACATTGAATAAATAACTCCTGTATAGAAGCTTATTCTTGGATTAATTTTCAGAAAATAATCTTGCAGTAAAATACATGTAGAAGAGAGAATTTTAAGTCTAATTCAACCTTATAAAATTATATCTTATTATTCGTGGATATGGGATTAATACTTCTTCTTTAGGGAAAGCATTCTGAGTACCCTCTTCATCAATGAGATTTGAGTCCAATTACATAAGAAATTAACACTGTTATTCTTTATCCAAAAAGATTAACACTATTATATAATACTCTACTTTCTTATTTTTATTCAATGAGACTTATACTCGTCAATTCTAACTAAATAATCTCCTTCTACAATTCCTCTACAAAGGTCAAACTCAGATACATATATCAGTATTTATCCTAAAAGATATCGTGATCGATTTCATCATGAGTCCAGTCTTTCAAGTGTGTTGTGATGATTGATCTTAAATCATGACAGTGTGGTAAAAAGTGCATGTTTATTAAAATCATTCATAATTTTTAGTTAAGAATTGTACATGTTTACTAAGATTGTTGATGGATGAAAAGATGGTTCATTGCAAAATTTTAAGGGAGATTATCTTCTGGGCAGCAAGGAATGTTTCTGAAAAATATTGTCCTTTAGACGAAACATGTGATGATTTTGTGTGTGTGTGTGTGTGTGGTGATAGGTGGTGGAGGTAATGGAGAAGTGGGAAATAGATAAAGAGAAGTGGGAAATGGCAGAGGAGAAGGAGCAAGAGGTGGAGCTATGGGGTTTTGATGATCTGGAATATGCACATGACACTTCCTTTTCAATGTCTCCACCTGACTCAGTTGCAAGTACTTAG

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