Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_27455 LG7 28830508 28831599 PREDICTED: protein LYK5-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/G 28830589 missense_variant p.Lys147Gln
T/C 28830592 missense_variant p.Arg146Gly
T/C 28830597 missense_variant p.Lys144Arg
T/C 28830616 missense_variant p.Arg138Gly
C/T 28830617 synonymous_variant p.Ala137Ala
C/T 28830628 missense_variant p.Gly134Ser
T/G 28830649 missense_variant p.Thr127Pro
T/C 28830711 stop_retained_variant p.Ter106Ter
T/C 28830715 missense_variant p.Thr105Ala
T/C 28830718 missense_variant p.Thr104Ala
C/T 28830730 missense_variant p.Asp100Asn
A/C 28830751 intron_variant
G/T 28830753 intron_variant
C/T 28830756 intron_variant
T/C 28830758 intron_variant
C/A 28830761 intron_variant
G/A 28830792 intron_variant
C/T 28830797 intron_variant
G/T 28830804 intron_variant
T/A 28830807 intron_variant
C/A 28830816 intron_variant
C/A 28830817 intron_variant
C/T 28830823 intron_variant
A/G 28830825 intron_variant
G/T 28830831 intron_variant
G/A 28830835 intron_variant
G/A 28830848 intron_variant
C/T 28830859 intron_variant
C/T 28830876 intron_variant
G/T 28830887 intron_variant
G/A 28830902 intron_variant
A/G 28830909 intron_variant
A/G 28830938 synonymous_variant p.Leu91Leu
G/T 28830948 missense_variant p.Pro88Gln
C/T 28830957 missense_variant p.Arg85Gln
T/C 28830975 missense_variant p.Gln79Arg
G/A 28831015 stop_gained p.Arg66*
T/C 28831030 missense_variant p.Lys61Glu
G/A 28831032 missense_variant p.Pro60Leu
T/C 28831053 missense_variant p.His53Arg
G/A 28831078 stop_gained p.Arg45*
A/G 28831079 synonymous_variant p.Phe44Phe
G/A 28831084 missense_variant p.Arg43Cys
A/G 28831094 synonymous_variant p.Arg39Arg
C/A 28831095 missense_variant p.Arg39Leu
C/T 28831107 missense_variant p.Cys35Tyr
T/C 28831150 splice_region_variant&intron_variant
G/A 28831152 splice_region_variant&intron_variant
A/G 28831172 intron_variant
C/T 28831174 intron_variant
G/A 28831191 intron_variant
G/A 28831202 intron_variant
A/G 28831209 intron_variant
G/A 28831211 intron_variant
A/G 28831212 intron_variant
G/A 28831233 intron_variant
C/T 28831242 intron_variant
C/T 28831257 intron_variant
A/C 28831276 intron_variant
A/T 28831301 intron_variant
A/G 28831323 intron_variant
C/T 28831326 intron_variant
G/A 28831339 intron_variant
G/T 28831343 intron_variant
C/A 28831344 intron_variant
A/C 28831356 intron_variant
C/T 28831361 intron_variant
A/T 28831368 intron_variant
A/G 28831370 intron_variant
T/C 28831379 intron_variant
G/A 28831380 intron_variant
C/T 28831395 intron_variant
A/G 28831402 intron_variant
G/A 28831425 intron_variant
C/T 28831435 intron_variant
C/T 28831437 intron_variant
G/A 28831446 intron_variant
C/T 28831483 intron_variant
C/A 28831487 intron_variant
G/A 28831518 intron_variant
T/G 28831546 synonymous_variant p.Ile18Ile
C/T 28831558 synonymous_variant p.Arg14Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_27455.1
MRSALQLRSSIRPRHVRIKCVESPQQPRQAPLGASVSSNVVFLVFEFFPDASLTHCLLNRRNSSYTDLVTWTSRMQIASNVAHGLDYIHNFFDSNSEVHPTVMQQPKSASNDWSGRTWLYWRRNRHLHGGPPLAAGRREEHHLLSLERRVMGDLEKLEEKRMKGRERLLMSGM*


CDS Sequence:
>Vu_27455.1
ATGAGAAGTGCATTGCAATTGAGATCAAGTATTCGTCCAAGGCATGTCAGAATAAAATGCGTTGAGTCACCACAGCAGCCTCGTCAAGCTCCTCTCGGTGCCTCTGTCTCCAGCAACGTCGTCTTTCTCGTTTTCGAATTTTTCCCCGACGCCAGCCTCACCCACTGTCTCCTTAACCGCCGAAACTCTAGCTACACCGATCTCGTCACGTGGACCTCTAGGATGCAGATCGCCTCCAACGTCGCTCATGGCCTCGATTACATCCACAATTTCTTCGATTCAAACTCCGAGGTCCATCCGACAGTGATGCAACAACCTAAGAGTGCATCCAACGATTGGAGTGGAAGGACTTGGTTGTACTGGAGACGGAATCGCCATTTACATGGTGGACCTCCACTTGCGGCAGGGAGGCGAGAGGAGCACCACCTGTTAAGCTTAGAAAGAAGAGTGATGGGTGACCTTGAGAAATTGGAGGAGAAAAGAATGAAAGGAAGAGAGAGGTTACTAATGAGTGGTATGTAA


Promoter Sequence:
>Vu_27455::LG7:28831599-28833599(-)
CAAAGCTTTGGCCCTTGCAGCAGCACATTCTTTCCTGTTGGTATCTTCAATAATTATGTGAGTGATCAGCTCTGAAAGTGACATTTGTTTGTGCATGTGTTTTAGTTGTTGCTTGTAATCAGTCCAGGAAGGCGATAGTTTCTCGATCAGAAGCTCTGAAACAAACTCATCTGGTAGAAGAACGTTCTCTGCTTTGATATCTTCGAGTAGCTTGTGGTACTCATTAATTTGCGACTTTATGTCCTTGTCTTCAATCATTTCCCAGCGATAGTAATTCCCAGTAATGAATCTTTGTCTGACTATATCTTCAGCCGTGTATTTGAGAATCAACAAATCCCAAATGTCTTTCGCTTCCTTATAGGAACAATACACATCGAACAAATCGTTAGAAAGTGCACTAAGTAAAGTATGACGACATACCTTGTTTGCATGAACCCAATCTTCAACTTGTTTTGAATTTGGAGGGAGACTGGAGTCGGGTTTTGAAGATGAAAGAGCAAAAGCGACTCTCTACATGTCTAAGAGGGTTGACACGCGTTCTTGCCAGCGTCGGAAATTCTGACCAGAGAAGGCTTCAATTTTTTATACATTCGGGAAAGGTTTCGCGAAGACCGTCTGAGTTTCGAAAACAATATTCTGATTTTCTGGGATTGAATTGTTGTTGATGTCAGCCATAAGTCCTTAAGATTGTTGTAGAAGCTGACAATAATTGAATAAAGATCACAAACAAAAGACTTCCTGAGGCGTGTAGATCACTGTCCTTAAGGACTTATCCGCGTGTATTGCGTAAGCCCCCCAGGATACAACAGGAACTTCTCAGAATTTCTAAGGATCTTAGAACTAGCAAGGATCTCTTAAAAAGAGAATAAATTAAACCCATAATATTTTTAGGGAAAGAAGAAAGAATGAAATTAATAAAAGAGAGAAATAGAGAAGAAGTTCTGATGATGATTTTCAGAATGGATGAAAGGCTCTATTTATAGAGCAAGAAAGAAGCCACTTTGCCCACAATACCAGTAAAATCCTGTGGCTTAAGGAAGAGTTCAAACTCAATCCCTAGCCTTGCGGGAAAAGAATTGACATTCAAAGCTAACGTTCAAAGTGGAGGAAATTGCCCGAGAAACTTGCGGAAAGCACCAAGATTCTGAATCATTATATTTTGCAATATAATATTCAAATTTGTAACAACGTTTATAAACATAATATTTTCATAATATAATATTCAAATTTATAACAATCATGGACTCTCACTTGAACAAGTCTCAATTATGGGTTTATTGGCCCATATGACCAATGTCCAACTTGCTTATGACAACCTGACATAGTACTCGGTATTCAGTAGATAGCTTATCCATCATTACAAAGTATTTAGTAATGGTCGAGTGAGTTCTACCAACCACAAGACACTTAGTATCAGGTACTCGATAGGTGTCTAGTTAACTAATAATTTTAAGATTGTAGTTGGTAGAACTGAAAGTCATCGACCACATACAACATACCAGTCCCCAATCTTTTTTATGTCTTGAAGGTATGCAAAGAATGTCAATAGCCAGTCTGCATTTGAGCTATAGGAATAAGGCGCTCGAATTCGGTAGTCAGCGTGTGTGATTTTGCAAACGAATTTTGTAAGGAAACTTTGTTATCTTTAATCATGACTTTATGTGTATAATAGCCCAGTCTCGAGAAGTGTAACGATGAAGAGGTTTGAATGATGAGATGTCAAATCATAGGAGATGTGAATGATGGGAGTAAGTGTGGTACAGAAACAGAGGCAATAGGTTACGAACTGTTATGAGAGTTCGAGAATGCCTTAGAGGAGAAGGATCGGTGTAGAATTTGAAGTGTTGCCTTTAATGAGCCGTTTCGTGGGTCGTTTTGGGATGAGTTTAGTCCATTAGATCAGAAGGTGAACCGTCACCAACACCTTATAAACAGGAGGAGAGGTTGCTCATAGTTTGCCACCAAGTTTCTTCGAGAGCTTTGATATTGTTCATGATTGC


Gene Sequence:
>Vu_27455(-)
ATGAGAAGTGCATTGCAATTGAGATCAAGTATTCGTCCAAGGCATGTCAGAATAAAATGCGTTGGTAATTGGGTGTCAGTACCATTAGATGTCACATCCTCCTTAAGCCTCTGTTCGTTTGAAGGTGAAACACTATTTATAAAGAAAAGAAAGCGATGATTTGCGAAGCAGGAGCTGTTCGTTTGCGTTGATTTGTGTTGATTTGTGAGCGAAGAAAAGCAATGATTTGTGTGACGAGGCTCTTTTTTTCATCTCGCTATCAAGAGGAGATTTGCGTTGATTTGCTCACAAATGACATTTGTGCCCTCTGTACATTATTATCTTCCCACGCCTCTCTTCCTCGTCCTGGTGCTGCCAGATCTGTCGCCGCGATGTTGGTGTTTCTCGTCGTAACTTTCGCCAACAAATCGACCTCCCGGAGCTTAGCTGCCATCTCGCCATCATCTACCAGAGTCACCACAGCAGCCTCGTCAAGCTCCTCTCGGTGCCTCTGTCTCCAGCAACGTCGTCTTTCTCGTTTTCGAATTTTTCCCCGACGCCAGCCTCACCCACTGTCTCCTTAACCGCCGAAACTCTAGCTACACCGATCTCGTCACGTGGACCTCTAGGATGCAGATCGCCTCCAACGTCGCTCATGGCCTCGATTACATCCACAATTTCTTCGATTCAAACTCCGGTTCGAGATCCGTTTTGGTTTCGTTCATAATCACATCAAGAGTTCCGGAATTGTTATGACGGTGGATAATTTGTGCGCAAAAATATGCCAGTCGCAGCTTGTATTTGGTTCCAACAAGGCTTCACCGCTTCCTCCATGTGTTGATGTCTTTCCATGGTTGATGATATGTGCTTTGAGATGCAGAGGTCCATCCGACAGTGATGCAACAACCTAAGAGTGCATCCAACGATTGGAGTGGAAGGACTTGGTTGTACTGGAGACGGAATCGCCATTTACATGGTGGACCTCCACTTGCGGCAGGGAGGCGAGAGGAGCACCACCTGTTAAGCTTAGAAAGAAGAGTGATGGGTGACCTTGAGAAATTGGAGGAGAAAAGAATGAAAGGAAGAGAGAGGTTACTAATGAGTGGTATGTAA