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ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_27396 LG7 27736042 27738931 PREDICTED: serine/threonine-protein kinase OXI1-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
G/A 27736075 5_prime_UTR_variant
C/T 27736131 5_prime_UTR_variant
T/C 27736220 missense_variant p.Ser11Pro
T/C 27736270 synonymous_variant p.Ala27Ala
A/G 27736327 synonymous_variant p.Ala46Ala
G/A 27736371 missense_variant p.Arg61Lys
G/A 27736388 missense_variant p.Glu67Lys
G/A 27736394 missense_variant p.Gly69Arg
C/A 27736522 synonymous_variant p.Leu111Leu
G/A 27736543 synonymous_variant p.Gln118Gln
G/A 27736565 missense_variant p.Asp126Asn
A/C 27736631 intron_variant
G/C 27736689 intron_variant
T/A 27736732 intron_variant
T/C 27736745 intron_variant
T/C 27736749 intron_variant
T/C 27736751 intron_variant
T/C 27736752 intron_variant
C/T 27736802 intron_variant
C/A 27736854 intron_variant
T/G 27736859 intron_variant
G/A 27736868 intron_variant
G/T 27736988 intron_variant
G/C 27737141 intron_variant
A/G 27737149 intron_variant
T/C 27737156 intron_variant
G/T 27737178 intron_variant
T/G 27737212 intron_variant
G/T 27737225 intron_variant
T/C 27737248 intron_variant
T/G 27737263 intron_variant
A/G 27737274 intron_variant
C/T 27737309 intron_variant
T/C 27737324 intron_variant
T/A 27737331 intron_variant
T/C 27737366 intron_variant
C/G 27737407 intron_variant
G/T 27737475 intron_variant
A/G 27737505 intron_variant
A/G 27737518 intron_variant
T/A,* 27737536 intron_variant
T/A,* 27737538 intron_variant
T/A,* 27737539 intron_variant
T/A,* 27737541 intron_variant
G/A,* 27737585 intron_variant
C/G 27737593 intron_variant
C/T 27737636 intron_variant
T/A 27737649 intron_variant
G/A 27737654 intron_variant
A/C,G 27737667 intron_variant
A/C,T 27737672 intron_variant
T/C 27737691 intron_variant
A/G 27737703 intron_variant
G/A 27737752 intron_variant
T/A 27737804 intron_variant
T/G 27737827 intron_variant
G/T 27737863 intron_variant
A/T 27737873 intron_variant
T/C 27737968 splice_region_variant&intron_variant
C/A 27738018 missense_variant p.Ala144Glu
G/A 27738043 synonymous_variant p.Leu152Leu
C/G 27738076 synonymous_variant p.Gly163Gly
C/G 27738129 missense_variant p.Pro181Arg
T/C 27738214 synonymous_variant p.Ser209Ser
C/A 27738226 synonymous_variant p.Ser213Ser
A/C 27738261 missense_variant p.Gln225Pro
G/C 27738288 missense_variant p.Arg234Pro
C/G 27738289 synonymous_variant p.Arg234Arg
T/C 27738328 synonymous_variant p.Val247Val
T/C 27738398 missense_variant p.Ser271Pro
T/C 27738545 synonymous_variant p.Leu320Leu
A/C 27738588 missense_variant p.Lys334Thr
T/A 27738598 missense_variant p.Asp337Glu
C/T 27738676 synonymous_variant p.Asn363Asn
A/G 27738818 3_prime_UTR_variant
A/T,G 27738824 3_prime_UTR_variant
C/T 27738827 3_prime_UTR_variant
G/T 27738842 3_prime_UTR_variant
A/T 27738897 3_prime_UTR_variant
C/T 27738904 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_27396.1
MGDGESTSDRSLNFEDMTVVSAVGRGAKGVVFLARAGGRRSGECVALKVMSKALIAQKRTRKKDEEEYGRVSFEEEVLRRFDHPLLPRLRGVLETEKVIAFAIDYCHGGTLHSLRKKQTEKMFSDDTIRFYAVELVLALEYLHAMGIVYRDLKPENVMIQENGHIMLVDFDLSKKLNPKSPHSLSQNSTPSPNSEKRSRKQQRLTRIYSFCNSGISPWDSDSEPQLSTVDSVRRTESDSVEKSNSFVGTEEYVAPEILSGKGHGFSVDWWSYGILLYEMLYGTTPFKGLNRKETFYRILTKEPELTGEKTALRDLISRLLEKDPDRRIPVEEIKGHDFFKGVKWDKVLHIARPPYIPTNEVENKVGFSKNDVEVFVNEVFFPTNDDDGVENPEHNKKNDDFLIF*


CDS Sequence:
>Vu_27396.1
ATGGGCGACGGCGAAAGCACCTCCGATCGGTCGCTTAATTTCGAGGACATGACAGTGGTCTCCGCCGTGGGGCGCGGCGCTAAAGGCGTGGTGTTCCTGGCTCGCGCCGGTGGCCGGCGGTCGGGAGAGTGCGTGGCACTGAAAGTGATGTCGAAGGCGCTGATTGCGCAGAAAAGAACGAGAAAGAAGGACGAGGAGGAGTACGGGAGAGTGTCGTTTGAAGAGGAAGTGCTCCGTCGTTTCGATCATCCGCTCTTGCCGAGGCTTAGAGGCGTTCTTGAAACGGAGAAAGTGATTGCGTTCGCCATCGATTACTGCCATGGTGGCACGCTCCACTCTCTCAGGAAGAAACAGACTGAGAAAATGTTCTCCGATGACACCATCAGGTTTTACGCTGTAGAATTGGTGCTTGCATTGGAATATTTACACGCAATGGGAATAGTGTACAGAGATTTGAAGCCAGAAAATGTGATGATTCAAGAAAACGGCCACATAATGCTTGTCGATTTTGATCTCTCCAAAAAGCTAAACCCTAAATCCCCTCACTCACTGAGTCAAAACTCGACCCCGAGTCCTAACTCGGAGAAACGTTCAAGGAAACAACAACGATTAACTCGTATATACAGTTTTTGTAACTCCGGCATCTCGCCGTGGGACTCGGACTCGGAGCCCCAGCTAAGTACAGTCGACTCAGTGCGTCGCACGGAGTCTGACTCGGTTGAGAAATCAAACTCGTTCGTTGGAACAGAAGAATACGTGGCACCCGAAATCTTATCAGGGAAAGGTCACGGTTTTAGCGTTGATTGGTGGTCATACGGCATCTTGTTGTACGAGATGCTGTACGGAACGACGCCGTTTAAAGGCTTAAATAGGAAGGAAACGTTTTACCGGATCTTAACTAAAGAGCCAGAGTTAACGGGAGAGAAGACGGCGTTACGGGATTTAATTTCAAGATTGTTGGAAAAAGATCCTGACCGTCGGATCCCAGTGGAGGAGATCAAAGGCCACGATTTCTTCAAAGGGGTTAAGTGGGACAAAGTGTTGCACATTGCAAGACCACCTTATATTCCCACAAATGAGGTTGAGAACAAAGTGGGGTTTAGCAAAAACGACGTGGAAGTGTTTGTGAACGAAGTGTTTTTTCCCACGAATGATGATGATGGCGTAGAGAATCCTGAGCATAACAAGAAGAATGACGATTTTTTAATTTTTTGA


Promoter Sequence:
>Vu_27396::LG7:27734042-27736042(+)
ATCTTTACTCTCATTTCCAATATAAGTTTCAGTTTTCTTCTTTTCACTTCAAAATGTATGTTCTGACTAGGTTTTAACATTTTCAAATACAAGAATTTAACTCTTAACATAAATATAGATATTAGATTAGTTACATAATAAAAAATAATAATAAAATTTCTATTAATATAAAGATTAGGGATTTGCAAAAATAATTTTTTTAATGTAACCACTCTATATAAACAATTAAGTTATAACAAATTTGTTTTCGTGAAGTTATTTAGTTTATTTCTTTTAAAAAAAATCATTTTATTAATTTGGTCTATGTTTCGATCATGTATATATATGACTTGGTTCAGTTAAAAAAACGTATTTATGTTTTTAAGTAAGTTTGGTTTAATTAAGTTATACCTATTTATTCATAAAAAATAGATATTTTCTTTAAAAATATGAATATAAAGATGAACATTATATTCTCATCACATCCCTGCGCTAATTATTTCATCTGAGATTCTGAGTTGTGAGATGATTTAAAAAATTAATTATGTCATCATCATCCATGGAATGCTGCATTTTTTTTATTATAGTTATAAACAAGAGGCTCTGCTTCATGTCTAGTGCATTTTCCATGCTCCCAGTTTGACTAAAATTATTTTCTTATAACATAACAATGTTTATATATATAATTTAAGATGTGGATTAAAAAAATAATAAAAAATAATTGTGACGGATTTAATGGTTTAGTGTGAACAGATTGAATATGTCATAGAATAATATTTTAAAAGAAAAGAAGGAAGAAAAGTGTGGTGTGGTCTAACTTAACAACAAAGTTAAAGACCATTTCCTTGGTAAAAAGGAAGAAAATGCTTGCAAAACTACCTTATTTCCTTTCTTTAAGGTGGAATAGAATGAGTAAGTTTGTAATAAACTTTTTTTAAGTACTTCTAGAAGAAAAAAGTAAAAATAAAAAATAAAAAAATCGGTAGTAGTAGTAGTAGTAAAACTGATCTATTTGTTACGTTTTTTTATGAAATACACAAGCAAAAGAAACTGTTCTTTTTTTCAAAAAATTCATACATGTATTTTAACTTTTCAAATAATTAAAATTTAAAAATTCTTAAAATTTGAAACTATTCTAACCAGCATATAATAACGTCGGTATTTTCTTTGTTACTAATTATAAAAATGTCTTCTATTTTATAAAATATAAAGAAAATAATATTACACATTATTCTCCTCTAAAATATGTCATTGAATTTGTAAGAAATTGATAAACTACTTTATTTAATTAACTTCTGTGATATAAAATAAATTGTTTTAAAATTTCTCTGCGTTTTTTACGAGATTATTTTTCTATTTATGTCTCATCATAATTAATATGCTTAAATCATGAACTGTATCTTTTTCTTTTTTTTTTTTATAAATATAAGAGATTTAAACAATTTAGCTCTTAAAATAAATAATCATTTAACAAAGGCCAGACATTAAGTAAAACTTAGTTATTCAAAAGAAAATATCACTAAACAAAAGAAAGGTAGTTATAAAAGATGTTTAAATTGATCAAAATTATATAAGTTTAATGGTTTATTAAAAGGATAGGGAAGATAATACTATTTGAGTCAATACATGATACAAAAGTTGTAGAATTCATATACTAATTTATATTTTTGTTTTATACATTTAAGGACATAATAATTATTTTAGAAATAAATCATTATCAACTTAAAATAATTACTGTTTTTTTATAAATTTTTAATGTGTTAAACTTAATATCATATAGTTGAGACACTACTAAACCATGTTTTACTTAATAGTGTGAGTGTTTATAAGATCTATCGACATGTGAATTGAAACAAAAAACACCGAACAGTGTCACAGTCTAGAATCCAAACGCGTTTTAGTCACGTTCCCGCAGTTTCGCTCTCCCTTCACAATAACACGTCAACAGTGACGTCGTTTTGTACACGTGTCCGACGATCACGCAACCTTACAAAAGTCCATTCAATCGCAAAAATCTTGGA


Gene Sequence:
>Vu_27396(+)
ACCGCAAGCAAAAAATAAAGGAAGTAAAAGTATGCACCCACCGTTCACGCACGCCCTATAAAACCTCTACAACACCGTCAACCTAAATCCCAACTGAAAAAAGAAGAAAACTTCACCAGCTCATTTCCGGTTTCCTGTAACCCATACCATGGGCGACGGCGAAAGCACCTCCGATCGGTCGCTTAATTTCGAGGACATGACAGTGGTCTCCGCCGTGGGGCGCGGCGCTAAAGGCGTGGTGTTCCTGGCTCGCGCCGGTGGCCGGCGGTCGGGAGAGTGCGTGGCACTGAAAGTGATGTCGAAGGCGCTGATTGCGCAGAAAAGAACGAGAAAGAAGGACGAGGAGGAGTACGGGAGAGTGTCGTTTGAAGAGGAAGTGCTCCGTCGTTTCGATCATCCGCTCTTGCCGAGGCTTAGAGGCGTTCTTGAAACGGAGAAAGTGATTGCGTTCGCCATCGATTACTGCCATGGTGGCACGCTCCACTCTCTCAGGAAGAAACAGACTGAGAAAATGTTCTCCGATGACACCATCAGGTACGTTAGAATAATACCTTTTCTTCGTTTCATTTTCTTCTGTTTGGTTAAAGTAAAAACGAAACCTTGCGAAGAAGAGAATCTCCGAGTTCTGAACTTTCATTTCCCAGTTAGGTTGACCAGAAATTCAGCTTAGAAGAATGAAAATGTTCGTAGTTCATTTTTGTTTTACTTTTTTTTTTTTTTCACTTCTGAAATAACGTGTGATCAAATTAGTTGTTTTTGACACTCCTCTTTTTAAAGGTTATTTTAGAGAAGTTAATACATATAATAAATATCTTTTTATCCTGATGCAATATTCATAAATTTCTATTTTTTATTAATTAATATACGTAATTTAATAAAAAGTTAGCTGAAAAAAATAGAAGTATAAATGATAAATAATGCTATATTAAATTTTGTAAATAACAGTGAAATAATGAGTGTAAGATATAAATTGAGTTTGATAAAAGAAAGGTAAACGTTTTTGTTAATATTTAAATCTTACAAATAAGAAAAAAAAATGTAAAATAATAAATTTTGTAATCAGAATCTGTTTTCAGTAAAACTTTTAGGCGCATATATAGTATGAATATCAATATGAACATGAATGTTATGTTATTGTTTTTGTACATTAATTATTGTGCAAAATAGTTATATTGATTATGTCGGATCTTTCTAAGAAAACATTGGTTTTTCTTTAAATTATTATGTTTTTTACAAATTCACCTAAAAAATTATGAAACCATTTCAACAATTTCTCAAATACTGGATTATCTATTTCTTTGATTCGTAAATTCATGAATCTCAGTACATAGTTTTTATAGAATTTGAGTAATGTTAACAAATTTTCTTTTAATAATTTTAGTCTATTCATACTTAAACTATTTTAGTTATGTTAAAATTGATATAAGCTAGAAGATATTGTTTCAATGAAATATTAAACTATAATAAGGGAAAGTGATGGATTAAGACGTTCGATTTTTTTTTACGCAGTTTAAACAATATCTTCTAGCTTTGAAAAATAGATGAAAAAAGCTGTCTTCATTTATTTCTGTTGCCAACCAAACAAGACCGAATCCGGTTGCTTGTCCTATTCGGTCGCACTGTTCACTTAATCTTTTCTTCCTAATTTTTGTGAGAAAGTTAGGTCAGAAAGAAAAAAACACTAAGAAATTTTATTCTTTTTATGGTACCGGTTTATAAAAAAGAAAGTAAAGAAAGAAAAAAGTATTTACTCCTTCTTTGGTATTTATAATATTTATAAATAATTTTTTAAAAATGAATTAATTATATAATTAAAAAATAGTCTTATAATAAATAACAAGGAAAGAAAATGGACGTAGTTTTTCTTTTATTTTCATAAAAACCGAAGCATAAAAAGAGAATTATCTGATGTTTTTTTTTATCAATTTGTAGGTTTTACGCTGTAGAATTGGTGCTTGCATTGGAATATTTACACGCAATGGGAATAGTGTACAGAGATTTGAAGCCAGAAAATGTGATGATTCAAGAAAACGGCCACATAATGCTTGTCGATTTTGATCTCTCCAAAAAGCTAAACCCTAAATCCCCTCACTCACTGAGTCAAAACTCGACCCCGAGTCCTAACTCGGAGAAACGTTCAAGGAAACAACAACGATTAACTCGTATATACAGTTTTTGTAACTCCGGCATCTCGCCGTGGGACTCGGACTCGGAGCCCCAGCTAAGTACAGTCGACTCAGTGCGTCGCACGGAGTCTGACTCGGTTGAGAAATCAAACTCGTTCGTTGGAACAGAAGAATACGTGGCACCCGAAATCTTATCAGGGAAAGGTCACGGTTTTAGCGTTGATTGGTGGTCATACGGCATCTTGTTGTACGAGATGCTGTACGGAACGACGCCGTTTAAAGGCTTAAATAGGAAGGAAACGTTTTACCGGATCTTAACTAAAGAGCCAGAGTTAACGGGAGAGAAGACGGCGTTACGGGATTTAATTTCAAGATTGTTGGAAAAAGATCCTGACCGTCGGATCCCAGTGGAGGAGATCAAAGGCCACGATTTCTTCAAAGGGGTTAAGTGGGACAAAGTGTTGCACATTGCAAGACCACCTTATATTCCCACAAATGAGGTTGAGAACAAAGTGGGGTTTAGCAAAAACGACGTGGAAGTGTTTGTGAACGAAGTGTTTTTTCCCACGAATGATGATGATGGCGTAGAGAATCCTGAGCATAACAAGAAGAATGACGATTTTTTAATTTTTTGACTTCCATATTCTTTCATACATAGACTAAATGTAGATCACGCATGCAAATTTTTTTGCATTTAATTGTCGTATAATTAAAATGGCAAATGTCTAGACTCATTCATGAATTACTTAATTTATTTTCCTTTC

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