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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_27264 LG7 26214446 26219575 PREDICTED: probable receptor-like protein kinase At5g47070
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 26214554 5_prime_UTR_premature_start_codon_gain_variant
C/T 26214561 5_prime_UTR_premature_start_codon_gain_variant
C/A 26214566 5_prime_UTR_variant
C/A 26214593 5_prime_UTR_variant
T/A 26214598 5_prime_UTR_variant
A/C 26214621 5_prime_UTR_variant
G/T 26214622 5_prime_UTR_variant
C/A 26214638 5_prime_UTR_variant
T/G 26214669 5_prime_UTR_variant
G/A 26214678 5_prime_UTR_premature_start_codon_gain_variant
A/G 26214800 intron_variant
C/T 26214884 intron_variant
T/C 26215051 5_prime_UTR_variant
G/A 26215142 splice_region_variant&intron_variant
G/C 26215170 intron_variant
C/A 26215189 intron_variant
G/T 26215284 intron_variant
T/A 26215333 intron_variant
T/C 26215335 intron_variant
A/C 26215336 intron_variant
T/G 26215411 intron_variant
T/G 26215501 intron_variant
A/C 26215621 intron_variant
A/G 26215626 intron_variant
T/C 26215649 intron_variant
C/A 26215772 5_prime_UTR_variant
A/G 26215808 5_prime_UTR_variant
A/G 26215911 synonymous_variant p.Gly32Gly
G/A,* 26215975 missense_variant p.Glu54Lys
G/T 26215977 missense_variant p.Glu54Asp
G/A 26216118 synonymous_variant p.Gly101Gly
C/A 26216186 intron_variant
T/A 26216309 intron_variant
A/G 26216470 intron_variant
A/G 26216557 intron_variant
A/T 26216604 intron_variant
A/T 26216607 intron_variant
A/T 26216639 intron_variant
T/G 26216660 intron_variant
C/A 26216670 intron_variant
T/A 26216799 intron_variant
C/G 26216908 intron_variant
C/T 26217137 intron_variant
G/T 26217141 intron_variant
A/G 26217324 synonymous_variant p.Leu166Leu
C/T 26217331 missense_variant p.His169Tyr
T/A 26217479 intron_variant
G/A 26217536 intron_variant
G/A 26217546 intron_variant
A/C 26217583 intron_variant
G/C 26217596 intron_variant
C/G 26217661 intron_variant
C/G 26217662 intron_variant
T/A 26217680 intron_variant
C/T 26217690 intron_variant
C/T 26217692 intron_variant
T/A 26217696 intron_variant
A/T 26217737 intron_variant
A/T 26217746 intron_variant
C/A 26217858 intron_variant
T/G 26217937 intron_variant
T/C 26218001 intron_variant
A/G 26218030 intron_variant
T/A,* 26218060 missense_variant p.Phe210Ile
C/T 26218125 synonymous_variant p.Ala231Ala
A/G 26218377 intron_variant
G/A 26218432 intron_variant
T/G 26218525 intron_variant
T/A 26218568 intron_variant
C/T 26218573 intron_variant
A/G 26218586 intron_variant
A/T,C 26218587 intron_variant
T/C 26218588 intron_variant
G/A 26218616 intron_variant
T/C 26218617 intron_variant
T/C 26218665 intron_variant
C/T 26218707 intron_variant
A/G 26218708 intron_variant
A/G 26218808 intron_variant
T/A 26218826 intron_variant
T/A 26218829 intron_variant
T/C 26218878 synonymous_variant p.Ile258Ile
A/T 26219088 synonymous_variant p.Ala328Ala
G/C 26219097 synonymous_variant p.Leu331Leu
A/G 26219114 missense_variant p.His337Arg
C/T 26219130 synonymous_variant p.Ser342Ser
A/T 26219250 missense_variant p.Glu382Asp
T/A 26219417 3_prime_UTR_variant
G/A 26219420 3_prime_UTR_variant
C/G 26219461 3_prime_UTR_variant
A/C 26219503 3_prime_UTR_variant
T/A 26219551 3_prime_UTR_variant
C/T 26219570 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_27264.1
MKCFHYFRDKSRNSRQRSAPELKEKEKMDFSGAERVTKSSSSSASPRGIPELYEEKGQNLRVFSLSELKRATSDFNRLFKIGEGGFGSVFKGSIQPADGNGNSVVVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDDERGIQRLLVYEYMPNKSLEFHLFNKAFDPLPWKTRLEIALGAAQGLTYLHEELEIQVIYRDFKSSNILLDGDFKPKLSDFGLAREGPVAGDTHVSTAVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEMLTGRRSMERNRPKSEKKLLEWVKQYPPDSKKFDTIMDQRLQGEYSKNGARKLAKLADHCLRKSAKDRPTMSQVVERLQQIMEDTDEADDRSVEVSENGQAEAEVKGNQLRSSELWKKRMEHLAKLGESVESAGRKRFMILQRANVSS*


CDS Sequence:
>Vu_27264.1
ATGAAGTGCTTTCACTATTTCAGAGATAAATCTAGAAACAGTAGGCAAAGGTCAGCACCTGAACTGAAGGAGAAAGAGAAAATGGACTTTTCAGGAGCTGAGAGGGTCACCAAGTCTTCAAGCTCATCTGCTTCACCCCGCGGTATACCAGAACTGTATGAGGAAAAGGGTCAGAATTTGAGGGTCTTCTCCCTCTCAGAGCTCAAGCGTGCAACAAGTGATTTCAACAGGCTTTTTAAGATAGGAGAAGGTGGATTTGGAAGTGTGTTTAAAGGTTCAATCCAGCCTGCTGATGGGAATGGGAATTCTGTTGTAGTTGCTATCAAAAGGCTTAACAAGGATGCATTACAGGGCCATAAGCAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAACACCCAAATCTTGTCAAGCTTATTGGATACTGTGCTTTGGACGACGAACGAGGCATCCAGAGACTACTCGTGTATGAATACATGCCGAACAAAAGCTTAGAGTTTCATCTTTTCAATAAAGCTTTTGATCCTCTTCCTTGGAAAACTAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTAACTTATCTTCATGAAGAATTAGAAATTCAGGTGATATATCGAGATTTTAAATCTTCAAATATATTACTGGATGGAGATTTTAAGCCAAAGCTTTCTGATTTTGGACTTGCCAGGGAAGGGCCAGTAGCTGGTGATACTCATGTTTCAACAGCTGTGATGGGGACGTATGGTTATGCTGCTCCAGATTACATTGAGACAGGTCATCTCACAGCCAAGAGTGATGTGTGGAGTTTTGGAGTGGTTTTATATGAAATGCTTACTGGCAGGCGTTCAATGGAAAGAAACAGGCCTAAATCAGAGAAGAAACTGCTGGAGTGGGTGAAGCAATACCCTCCTGACAGCAAGAAGTTTGACACAATAATGGATCAGCGACTTCAAGGAGAGTATTCCAAGAATGGAGCAAGAAAACTGGCAAAACTCGCCGATCATTGCCTGCGTAAGAGCGCGAAAGATCGGCCAACGATGAGTCAGGTGGTGGAGAGACTGCAGCAGATAATGGAAGACACTGATGAGGCAGATGACAGAAGTGTTGAGGTATCAGAAAATGGTCAAGCTGAGGCTGAAGTGAAGGGAAATCAATTAAGGTCTTCAGAGTTGTGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAAAGTGTGGAGAGTGCTGGCAGAAAAAGATTTATGATCCTTCAGAGAGCCAATGTGTCCTCATAG


Promoter Sequence:
>Vu_27264::LG7:26212446-26214446(+)
ATCTATCCCATCAAATATCCCACTCACATTTACCTAAGTTTCAGCATCTCACTGTTTAGTTCTTTTTTCACTATACATATTTTCAAACTTAGCCATTAATATATACTGTTTAACGTCATCCTTTTTAATATTTTTTTATTCATTTTTGTTAGAAAAAATATCAAGCTCGTATATTTTGTTTAATTAATATTAATACAGTTTAAATATTGACTGGCAATATAATAATAATACGTGACATTACAATATAAATTACATGTAACAATCACTTTAAAATATTTACAATATTATCATTATATTATCATTATTTAAATGATATTATCAACAATTTAATAAAAAATACATAATTTTTTAATAAAATAAAATTTAAATAAAAAATTAAAAACTATTTTAAATTAGATATATAAATAAGTTAAATATGTTTTTCATATTTTAATTTTTTGTCAATTTTTTTTAAATTTGTTCAATTTAGTCTTTTAATTATAAAAATATTTGAATTTAGTTTTCTTAATTAAATTTTATTAATATTATTTAACGTTTTAAATATATTTGTCATTGTTTATAATTGATATATTTTTATTTTAATATTAAGTATAAAATAAATGTTAAATAAATTTTACAAAATTTAATTAGAATAACTAAATTTATATAATAAATAAAAAATTAAATTAATTCAAAATTTTAACCAAGAATTAATTTTATTTTTTACTGAATAAAAATATATTTAATTATATATATTAATCCTAATAATTTCAAAGACAGGGACGTGCAAGAAAAAAGAACTAGGCCTTGAAGAAGGGATGCAGAATAAAGAAAATGAATTAAAGAGTTGGTAATAAAGTTATTGAAAGATAATTAAGAGGTGTGTTAGTAAGAAAGTTAATGATGAAACAGAGAAAAAAAAAGGGAGAAATAGTTAAAGATGAGAGAGAAAAAAGTTTTATTAACAATTAAATATTTCAATTAGTGCAGTATCTCTATTAAATACAGTAATTAATAAAGTTGGCATAAGCATTTATAGTTTCTAGATAACCACGAGAAAATATTAACATTGTTATTATTATATAGATTTAAACATTAATTTGATTTTTATTTTTTGAGTTCATTTAATTTAGTTTTAATATTTATTTTAATTTTTATCATGTTTAATTTAAATTTTTAAATAGTTAGCAAACAGTGAATAATGTTTGTTATATGTAAGTGATTTTTAATTTTTTCTTTTAATTTAGAAATGTTCATGAATAAAAAAATTAAATTCAGCAACAATAATAAATATAAAAAATGAATTAAATATAAAACATGATATATATAACTGATCCATATGGCAGTCATATGATACTGATTTGATTTATTAATATTATCTAAGTTAAGAAATTAAAATGTTAAAACATATAAAAAAACAATTAATACATAATAAATACTGTCTGTTATTTATTAAATAACGTTAGTAAAAAAATGACTAAATTTATAAAAATTAAAATCAAATTAAATAAAATATATTAAAACTAAATTGAATAAAAAATAAAATCAATATTTAATATTGGAACTGAATATTCTTTAAAATGTTAGGAAATGAAATAAACTTTAATAAAATTCTCACAAGATTTTTTTTGTATTTTTCCAACATAATAAAAATATGTACATAAACTAATTAAAAATTAAGAGATGATAAGATATAAATAAGTAAAATAGTAAGTAATACTTTCTGAAATTTTAATCCTTTCCCTTCTTTTATGTTTCTCTTTTAATTGAAATTTTGCTATATTTTTAACATATATGAAAAGATTTAAGAATGTGTTATTTACACTGAAACTGTTACACATATATATTAAACTCGATTTTTCAAAAGAAACCCGTTAACCTCTTTTCTTACATCTATGGAAAGTTTCTTAAATTTAAAAAGTATAAATTACATACAAATAATTTTCTTAAATATGACATTTGAAAAAAATAATAATTTAAAGCTATATAAGTCGGTGTATGTGAGATATTATCCTTTTGAA


Gene Sequence:
>Vu_27264(+)
AAAAGAAAGAGAAAATAAAGATAGGTTGGTCAATGTGTTCATGTTTCTGTCTTCAAACTTCAAAACAGAAACTTGAGCAAGCTGGCTAACCTTTGGTCAACCAATGAAAGAAAAACGACACCTTTCAGCAAACTTTCTTTATTACTTCTTTCTTCTTCATTGATATCCGTGTGAGAGAAGCCAAAGAAAACTCCTAACTCATGTGGATGTCAACCTTTTCTTCTGTTTTTTCGTGAAAACTTCAACCTTCTCGAACGTGTACGGAACCAAGCCATACCCTTCTGTGTTCTTTCCCTGTGAGGATTCCAAAATTTAATTACTCAACTTCAATTGCAACCATTTTGCTCTTTCTTCACTTGGTTTTTCCTTCTGAATCCTGTTTGTTTGTCTTAGCCGATTCTGGTTCATTTTGCATGTGCTGTGTACCTGACAAGTTGTCTTTTTGTGTCAATGTTTTTTTTTTCTTCTCTGTTGGTTAATGTTTTTTCTCTCTCGGGTTGCTTAAAGTTTGAAAATTTTTGCAATTCTAGTATGCAGATGCATCTGGGGTATCCTTATTCACTGCATAGTTGTGCTTTGCTGCTTTATAGGTTGTAATGGTATCATGGGGATTTGTTCTTGACAGTCATTGATTTTGGTGATTTGTTGAATGATAGCAAGTTGATCAGAGACCGTGCTTAAGAATCATAGGTAAGTGTTTATGCTATTAACTGCTTTTACTTTTGACTACATAGTTGTGTTTTCCTTCTTTCTAGGTGGTAATGGTATCATGGGGACTTAATCTTTAAAATCAATTTTTTTTTTTGTGGTTTGTTGCATTGATAACAGGTTAAGCAGAGACTGTTCATGAGAATCATAGCTCATTGTTTATGCTAAGAAGTGCTTTTTCTATTTCACTACTTTGTTGTGTTTTTCTTCTTTCTAGATGGTAATGGTGTGAAGGGGATTTATCCCAGACAATAAATTTTGTGATTTGTTGAATTGATAGCAGATTAATCAGAGACTGTGAATAACAATCCTAGCTAATTGTTGATGCTGTGAATTGCTTTTTCTATTCACTACTTTCTTGTGTTTTTCTTCTTTGTAGATGGTAATGGTGTCAAGGAGGTTGATTCTTGACAATAATTTTGTTGTGAATTGTTGAATTTTGATATCACGTTAATCAGAGACTGGCAAAAGAAGCATAGATAATTGTTTATGCTGTGAAGTGCTTTTGATATTCACTACTTTGTTGTTGTGTTTTTCTACTTTGTAGATGGTAATGGTATCAAGGGGGTTTATTCCTGACAAAAATTTTGTGAACTGTTGAATTGATAACAGGTTGAACAGAGATTGTGCATGATAAATAAGCATAGCTGATTGATTATGCAATGAAGTGCTTTCACTATTTCAGAGATAAATCTAGAAACAGTAGGCAAAGGTCAGCACCTGAACTGAAGGAGAAAGAGAAAATGGACTTTTCAGGAGCTGAGAGGGTCACCAAGTCTTCAAGCTCATCTGCTTCACCCCGCGGTATACCAGAACTGTATGAGGAAAAGGGTCAGAATTTGAGGGTCTTCTCCCTCTCAGAGCTCAAGCGTGCAACAAGTGATTTCAACAGGCTTTTTAAGATAGGAGAAGGTGGATTTGGAAGTGTGTTTAAAGGTTCAATCCAGCCTGCTGATGGGAATGGGAATTCTGTTGTAGTTGCTATCAAAAGGCTTAACAAGGATGCATTACAGGTATGAGACTCAACAATTTCCTTGGGATGTAATTGATCAGAGACTTCTGCATACAAACTCTTATGTTTATGGTTCAAAGCATTTAGAGTCCAATTGTCACCATTTCCAATGTTTGTGTCTGTGTTAGTGTCAATGTCCCATGTTGTCTCATACATGTGTCTATGTCTGATATGTGTTGGACATATGCGTGTCCGAGCTTCATATCATTTATAATCCTCAGCCTCAATGGATCAGAATTTTTGTCTCACCCAATAGATTAAGTTATATCATCCGCTACACTGTCTATCTACTATTTTAACATTTATAAAAGTAGGGAGATTGGCTGGTGGGAAGATACTAATTTCCTCTGTTAAGTTATCTGAAAACTAACTGGTAGTACCTCATTACATTAGTCTATGTTAATGTACTTATAAATGAGTTAAGTTCAAAAAGACATCAATAGATGTCTATGCATTTATAGTTGCTTCTTTCAACCTTGGACCTTAGTTCAAGATGAGATAGTGCGTGTTGGAAATAATCTTCTTTTTAGTGGCAAAGATCTCTCACTTATGAGTTGTATATTTACTGCTAATTAATGGGATTTCTTACAAAAAATTAATAAGATGCTTTTCCTGATATATTTGAAGCCATATTTTTTTACTCAAATTTATTGGAATTGAACTTAATGTTCAGTATGTTAAGGTATAATTTACATATAGAGACATTGTACTGTAATGTAACTCCATAAATGGATTTCTGCTTCTATGGTATAAATTATTTATGATACTTCTTAATCAAAAAACCCTATATCATCCTTACTTTAAAGTACAGAGGAATTATTTTGATGGATCTTTTACTCTGACGTGCTAATTATATATAATAGACAAGATTTCTTTCTTGCTAAGGTCCTGAAATATCAATTATGTTCTAAAAATTTGTCATTTATGCATGCTGAAATTTGTTAGTAATTGAATAATTGGATATGGTGATACGAGGATATCCCTTTTGACTATTTTTCCTTCTTTCATGTAGGGCCATAAGCAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAACACCCAAATCTTGTCAAGCTTATTGGATACTGTGCTTTGGACGACGAACGAGGCATCCAGAGACTACTCGTGTATGAATACATGCCGAACAAAAGCTTAGAGTTTCATCTTTTCAATAAAGCTTTTGATCCTCTTCCTTGGAAAACTAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTAACTTATCTTCATGAAGAATTAGAAATTCAGGTTAGAGTTTAAGAAATATGTTTATACATTATTCCTGCTCTCCCTTAGAGATATATATATGATCATTCATTGCACAGCTTAAGCTTTTAAGGGAGTTGCTCCTTAATGAGAGGAATAAGATAAACATAAAAAGAAACAAATAAAATTTGATGATTTTGTAGAAAAATTCTTTTGAGGAAGTGACATCTTTAGCATACTCTTTTGAACTCAATCTCTACTATTCCCTATAAATTAAAAAAAATTGTCTGTCCCACTTCTTACATATTTAATCGCTCTTATGATTTGGTCCTTTTCTTGAAGTGTATGTAAACTATCCATATTAATTGGAACTACCCTTTTAGGAAAGGGATCAGCAGCTATTGCATAATTTGTCCACATGATTATATCAGTATAGCTATAGTAAAATATGTAATACATAACTTTATACCACAAATTAACAGTGGCAACTCAGTGGAGTAATACCATAATCTTGGATTTCACATTATTAATTACCATTTTTCCTATCATTGAATTGCTTTTCTCTGTTTGATATAGCTTTTAATTTGAATTTATATCTCCTGAATTTTTCTTCCTCTGCTTTTAACAATTTGTATGCAAATTCTTTAGGTGATATATCGAGATTTTAAATCTTCAAATATATTACTGGATGGAGATTTTAAGCCAAAGCTTTCTGATTTTGGACTTGCCAGGGAAGGGCCAGTAGCTGGTGATACTCATGTTTCAACAGCTGTAAGTGCCATGCTATATTCAGCAGAGTTATCACATTGCATGCATTTTTCTGCATAGATTCTGAACTTAATTGTACTATTCGTAAACGTGACTTACCAAATATTTAACAACAAAAGTCTTGTCCTACCTCATGAAATCAGCTACATGGATTGCATGACTTCATTGAACTTGATTATTCACCCCGAGATGCCTCTCAATTTTTTCTTGTGACCTTTCTAACTGATGCTGCCAATGGCCATCTTTGCATGTCTAAACTACTTCAGTGACTTTTCTCTCATTCTTCCTTTATCAATGTTAGTCATGTTAAGAATTCAAGTATGAGTTAAAAGTCTTGAATAGAAATGAAAAAGTTGAGTATTATATAAGAAAAACAAGGCCTACAAACATTAAACATTAAACCTTCAACAGTGATTTCAGAAATGATGGTTTGTCTTGGTGTTCAGTCTAAGTCGAGATAAGTATGTCCAATTGTGGTAAAGACCCATCTGTAGTTAGGGTTAGTGAGTGTGTTGAGATAATTGCATGGACAACCCATAGTTCAGATTTGGTCAATCTCCTCAATCTATTCCAGTATGGAAACAAATCCAACAAAAACCATTATCTTCTTTATATAATCAATGTCAAAGTTATGTATGATTATAATGAGGCTATGCAAACATTTTTTCATGTCAGGTGATGGGGACGTATGGTTATGCTGCTCCAGATTACATTGAGACAGGTCATCTCACAGCCAAGAGTGATGTGTGGAGTTTTGGAGTGGTTTTATATGAAATGCTTACTGGCAGGCGTTCAATGGAAAGAAACAGGCCTAAATCAGAGAAGAAACTGCTGGAGTGGGTGAAGCAATACCCTCCTGACAGCAAGAAGTTTGACACAATAATGGATCAGCGACTTCAAGGAGAGTATTCCAAGAATGGAGCAAGAAAACTGGCAAAACTCGCCGATCATTGCCTGCGTAAGAGCGCGAAAGATCGGCCAACGATGAGTCAGGTGGTGGAGAGACTGCAGCAGATAATGGAAGACACTGATGAGGCAGATGACAGAAGTGTTGAGGTATCAGAAAATGGTCAAGCTGAGGCTGAAGTGAAGGGAAATCAATTAAGGTCTTCAGAGTTGTGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAAAGTGTGGAGAGTGCTGGCAGAAAAAGATTTATGATCCTTCAGAGAGCCAATGTGTCCTCATAGTTTCATCTCTAGAAAACATTTTATTTTGCCTTAAGTGTAGGTGAGAACAAGGCTCATTTTATGTGTTTAATGCTCCCAAGCCAATCTTTATGTGATATGTTATCAACCCTTTTTCTCAAAGTGAAGCATGTGATTATTTATGTTGCATATTAAAATGGCTTAGGGTTTGAGATTAGAACTTAGCCCCTAA

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