Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_27262 LG7 26157170 26159705 PREDICTED: transcription factor bHLH18-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 26157202 missense_variant p.Lys11Asn
A/G 26157394 synonymous_variant p.Ser48Ser
C/T 26157736 splice_region_variant&intron_variant
T/A 26157771 upstream_gene_variant
T/A 26157816 upstream_gene_variant
G/C 26157825 upstream_gene_variant
A/T 26157863 upstream_gene_variant
T/C 26157873 upstream_gene_variant
A/G 26157875 upstream_gene_variant
T/G 26157885 upstream_gene_variant
C/T 26158003 upstream_gene_variant
G/A 26158004 upstream_gene_variant
G/C 26158015 upstream_gene_variant
A/G 26158035 upstream_gene_variant
T/A 26158086 upstream_gene_variant
T/A 26158136 upstream_gene_variant
G/A 26158137 upstream_gene_variant
A/T 26158141 upstream_gene_variant
A/G 26158290 synonymous_variant p.Glu179Glu
T/G 26158399 missense_variant p.Ser216Ala
A/G 26158510 missense_variant p.Ile253Val
G/C 26158518 missense_variant p.Gln255His
T/A 26158578 synonymous_variant p.Pro275Pro
G/C 26158615 missense_variant&splice_region_variant p.Glu288Gln
A/G 26158703 upstream_gene_variant
A/G 26158739 upstream_gene_variant
G/A 26159064 upstream_gene_variant
C/T 26159163 upstream_gene_variant
A/G 26159216 upstream_gene_variant
A/G 26159262 upstream_gene_variant
A/G 26159269 upstream_gene_variant
T/C 26159270 upstream_gene_variant
A/G 26159324 upstream_gene_variant
A/G 26159342 upstream_gene_variant
T/G 26159412 upstream_gene_variant
A/T 26159517 upstream_gene_variant
A/G 26159519 upstream_gene_variant
G/C 26159526 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_27262.1
MDQMDDDSWQKWVSILEENDWHTLRDFDLNSAGEEFKGDSSVVPAEHSLKESSTTLLSNFPSLEENTGFDMTSVTQQHASPRPKSCVLSFENFTSVPIFDKKTCQHLGEHSNQTQEKTRKPLKRERNSSQTLDHIMAERKRRENLTKMFIALSALIPGLKKVDKVSVLNKAIEYVKCLEQRVKDLEKENKKRKIESEGCLKVSKSNMVGYDFSWISHACNDGDKASKKCSKVEARVAGKDVLIRVTCEMQRNIVQNVMAKLEAHNLSVVSSNVLPFGNSAITITSIAEMNPKFTTTVDNFVKTLTEDLSKCCNL*


CDS Sequence:
>Vu_27262.1
ATGGACCAAATGGATGATGACTCATGGCAAAAATGGGTTTCGATTTTGGAGGAAAATGATTGGCATACTTTACGTGATTTTGACCTGAACTCTGCTGGAGAAGAATTTAAGGGGGACAGTTCAGTGGTGCCTGCAGAACACTCATTGAAAGAAAGCAGCACTACCCTTCTAAGCAATTTTCCATCTTTGGAAGAGAACACTGGCTTTGACATGACAAGTGTCACACAACAACATGCTTCTCCACGACCAAAGTCTTGTGTTCTGTCGTTTGAGAATTTCACTTCAGTGCCAATTTTTGATAAGAAAACATGCCAACATCTTGGTGAACACTCAAATCAGACTCAAGAAAAAACCAGAAAACCCCTCAAGAGGGAAAGAAACTCTTCTCAGACACTTGATCACATAATGGCCGAGAGGAAAAGGAGAGAGAATCTCACCAAAATGTTCATTGCCCTTTCTGCTCTTATTCCTGGCTTGAAAAAGGTGGACAAGGTTTCTGTTCTGAACAAGGCCATAGAATACGTGAAGTGTCTTGAACAGCGTGTGAAAGATTTGGAGAAAGAGAATAAGAAAAGGAAGATAGAATCAGAAGGGTGCTTGAAAGTGAGCAAAAGCAACATGGTTGGATACGACTTTTCGTGGATCTCTCATGCTTGTAATGATGGTGACAAAGCTAGCAAGAAATGTTCGAAGGTTGAAGCAAGAGTTGCAGGAAAAGATGTACTTATCAGAGTAACGTGTGAGATGCAAAGGAACATTGTGCAGAACGTAATGGCCAAGCTTGAAGCTCATAATCTCTCTGTTGTTAGCAGCAATGTTTTGCCTTTTGGGAATTCTGCTATCACCATTACCAGCATTGCTGAGATGAACCCTAAATTCACCACGACAGTTGACAACTTTGTGAAAACATTGACTGAGGATTTGTCCAAGTGCTGTAACCTGTAA


Promoter Sequence:
>Vu_27262::LG7:26155170-26157170(+)
ACGAATGAGCGAATGCCAATTTGGAGAATGAAAGAACACTTTGGAGAACGAGGTTTCCATAAGAGAATAGAAAAGACAAATATACGAAAAAAAGAAAAAACTGATTTTCCAAATCCTTAATCAATTTCACTTAGGTATTTATCGGTGATTTATGATAAATATTTACACATACATGCATTACTAATAAATTTATTAGTTGATAGTTGAACAACCATAACTTGTCAATAAATCTATCAATAAATATATATTACCCACATATATAAATTTATATGTAATTATCCGTTGATAATTTAATTAATTATTATAGTGAATATAATATATTCCACCAACAAAAGCTACTTTTCAATGCTTATGTGATTGGAGACAAAGGCTGCTTTTCAATGCTTATGATTGGAAACTTTCAAGAGCTAAATTAGAATATGAGAAGCCACTGAAAGTTTTGGTGGATAACAAATCTACCATTTAGTCTCTCCAAAAATCTCGTTTTCCATGGCAGAAACAAAAACAATGAAAAAAAAATATATTTGGAATGACCAAGTAAGTCAAGGAAGAATAGAACTTATACATAGGAGAAGATCGTACGTATTATTGATGCTTTTACCAAGCCTCTAAATTATTTGAGATTTGAAAATTGGATAGAGCTTATGAAATTAAAATGTTTCTATTCTATGATTAGACAGTTTCTTTTATTGCAGTTATTTTTATTTTTACAGTTCTGTACGTTTTGTATGTTCTGAATGTTCTGTATGAGAAAATTAGTTTTTGTCTCATGTTTTTCCTCCATTCCTTTCTACATACCTGTCCTCTTGTATATGTTGTGTTTGGGAGATTGTGAGAGAAAGCAGTACTTTGTTTGTGTGTGATGTGGTGTCTCTGGTCCAACACAACCTATTTTTTTAATTTATTCTTATTTATCTATAAATAATATCAAAACGTAACATTTCTATTTCTAATTTTAGAAAATGATATAAATATCAAAACTAATATTCAGTTTTACTTAAAATTGATACTTATCACCGTACATAATGCAGGTACTATAATACCAAGGTAATTAAAATCGGGTATAATATTTTTTTTTATAATTTTATAATTCCTTAATTAGTGTCTTGTATTTGGTTAACATTGTCTTAAAAAAATTATGAACTTTTCTTTGATAAATAATTTTACACAATAGCAATTGTTATTTCTTAATATTAAATTTAGAAAAGTATAATAGGTGTGAACAATTATTTATATATATATTTATCTATCACCATTATTACCCCTCTTTATTGACTTTTGTTTATGAGATGTTAAGAAGTTTTCATTTTTACACACTATAAAGGTTAGATTGTTCTTAAATTCAATCAAAGGCTCTTGTCCACTTTTATGTTCCATATGTTTTTTTATGTTCACTTTTTTTTAAAAAAAAATTATGACTTGTATTAAATTTTAAAAATGTATTTTTATAACAATATATTTTTAAAATGACTTAAGAATACACTTATGAACTTTTGTTTATTATAATACATGAATTACCTAGAGTCTAGATTTATGTTATAAAAGTGGCTTAGAATTTTAAAATTCAATGTTATTATTTTTTTACAAGCTTTTTCTTTCATTACACAGTGAGATGTAAAAGTGGATGAACAATTTGTCCTTTTGACAATTTGATTGCCTGAAATAGAGAAAAGCAAATAACAAATATAATTTACCTTTTTTAATACAAATTGCTCTGATCATTTAAACTTTGGAATCTTTTTCTATTACTGCTATTATGTTGATTTACAGCAAAATTACAAAATCAAATTGTAAAACACGTGTTGAAGAAAAGTGAGAGGGTCGTGGCTTTAGCCTTAGCCACATATATAGTCTTTCTCAAATTACCAATACTCTAATCACACACTATCAATCAATAACCAATAATGGCACGGGAAGGAGTCCCACGTCGCTCAGTTTCGGCATCTCCCCTCAAGAGCATAAGCATATATAAACTGCACTACAGCCATTTTGTAGTTCGA


Gene Sequence:
>Vu_27262(+)
ATGGACCAAATGGATGATGACTCATGGCAAAAATGGGTTTCGATTTTGGTAAGTAACATATGAAATATGGTATCTAACTTTATACACAACCTTGTTCCTAAAAATTGTTCTCTTTTGTTGTGTTTACAGGAGGAAAATGATTGGCATACTTTACGTGATTTTGACCTGAACTCTGCTGGAGAAGAATTTAAGGGGGACAGTTCAGTGGTGCCTGCAGAACACTCATTGAAAGAAAGCAGCACTACCCTTCTAAGCAATTTTCCATCTTTGGAAGAGAACACTGGCTTTGACATGACAAGTGTCACACAACAACATGCTTCTCCACGACCAAAGTCTTGTGTTCTGTCGTTTGAGAATTTCACTTCAGTGCCAATTTTTGATAAGAAAACATGCCAACATCTTGGTGAACACTCAAATCAGACTCAAGAAAAAACCAGAAAACCCCTCAAGAGGGAAAGAAACTCTTCTCAGACACTTGATCACATAATGGCCGAGAGGAAAAGGAGAGAGAATCTCACCAAAATGTTCATTGCCCTTTCTGCTCTTATTCCTGGCTTGAAAAAGGTCAGATCACATATGGTTTTTCCTTACACACTATTTCTTGTACTATTTTATTAGCATCTGAAGATCGAATTTGGCATTAGAATTTTATCAGGATAGATTTTCTAGAATTATACTAAATTTGATTATAACAACTATGTATTTATAATTGACTTTGTTATGTTTTATTTTTTTAACTCTTTTTTTTCTAGGGTTATTTATATACCTAATCCTACTTGTAATACATTTAATTAACTTTTTCTAATACTGTATATAAGATGTATTTTATTACTCGTATTTGATTAGGAAGACTATTTTCTTGATCAGCTTCACTCAAAGCCAACTCTAATAATTTGATGTTTAAGCCATCAAATACTACAAATCAGCTTTTTTTTCATCGGTTTTGTGTATTTTTACATCTATTACTGAACAGATGTAGATTGTTCAATGGGTGCAAAGATGATTTTGCTTTGCATGAAGTCGAAAAATGGATGTAAGAAAGTTCTAATCTGTAAAGATGTGTGTAGGTGGACAAGGTTTCTGTTCTGAACAAGGCCATAGAATACGTGAAGTGTCTTGAACAGCGTGTGAAAGATTTGGAGAAAGAGAATAAGAAAAGGAAGATAGAATCAGAAGGGTGCTTGAAAGTGAGCAAAAGCAACATGGTTGGATACGACTTTTCGTGGATCTCTCATGCTTGTAATGATGGTGACAAAGCTAGCAAGAAATGTTCGAAGGTTGAAGCAAGAGTTGCAGGAAAAGATGTACTTATCAGAGTAACGTGTGAGATGCAAAGGAACATTGTGCAGAACGTAATGGCCAAGCTTGAAGCTCATAATCTCTCTGTTGTTAGCAGCAATGTTTTGCCTTTTGGGAATTCTGCTATCACCATTACCAGCATTGCTGAGGTATATATCTACACTCTTCTTATAATGACACATCTTATGAACATACCACTTTCCTTGTTTAAACATTAAAGAAAGTATATATGTCAAAATCTAATAATTTAATCAAGTATTACTTTTAATTATTCTCTCACTTAGAAAAAACATCACTCGTTCCAGAGATAATAAGACAAACAATTTCAGTTGTCTGGTGTGAAAATCGATGATCAGTAGTTCTTTTGTTTTATCTTCTTTACATGCATGTGATTCTTTTTGGGATTGCTATTTTTTGAGATTGTTATGTTGGGAATCCAAGTGTGAGTTTAAGTCCCACATTGGAGAGAAATGAGAAAGTAGAGTGGTTTATAAGTGGGAAGACACATTAACTCATTGCCTTAAGGTTTTGGGTGAAGAGTGGTGTCAACTACTTATAAGGTTGGACTCACATCTCATTACTCATTGACTTCCCGGTCAAAAACCTCCCCAGTGGTATCTCATTACTCATTGACTTCCCTGTCAAAAACCTCCCCCTTGATACTCCTAACATGTTATATCATTCTCATTCTCATCAGTTTTCAAAATTCATCAAGCATGTATCAAAGTTCTCGTTTCTTATCTTTTGAATGTCTTTCATCACTAATTTCATAATCATAATCCTCCAAATATTTACACAAAATACAATTTTGATGTTGCAAAACTGGAAGATCATTAATACAAAATACGACTAGAAAATGTAAGACATAATTACAATTTATATTTGTTTATAATATAAATGAAAAGTGCAATTAGATCATTATATTAATTATTTTATAAGATATTAATTTTCTAAGAATAATTACAATGTGTCTTCTTTCCAATACTTACATTTACGATACAGAATAAAATAGTATCTTGATTGTAAGAACAAGAATATTTACAGAGTTAGAATCCTTGTGAGCCTTACATGCTTATCACATGGAACATTAAAATAATAATATATTGTTGTGCATGGACCATGATACGTATATATGTATGATTGCCTTATCTTGCAGATGAACCCTAAATTCACCACGACAGTTGACAACTTTGTGAAAACATTGACTGAGGATTTGTCCAAGTGCTGTAACCTGTAA