Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_27260 LG7 26144254 26146529 PREDICTED: transcription factor bHLH18-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 26144432 intron_variant
T/C 26144433 intron_variant
C/T 26144549 intron_variant
T/C 26144631 intron_variant
A/G 26144685 intron_variant
T/C 26144686 intron_variant
T/A 26144689 intron_variant
T/C 26144693 intron_variant
T/C 26144739 intron_variant
T/G 26144750 intron_variant
G/A 26144792 intron_variant
C/G 26144818 intron_variant
G/A 26144920 intron_variant
T/C 26144966 intron_variant
T/C 26145002 intron_variant
A/C 26145017 intron_variant
A/G 26145062 intron_variant
C/G 26145189 missense_variant p.Gln255His
A/G 26145324 synonymous_variant p.Tyr210Tyr
T/C 26145365 missense_variant p.Lys197Glu
T/C 26145381 synonymous_variant p.Lys191Lys
T/C 26145395 missense_variant p.Lys187Glu
C/A 26145396 missense_variant p.Glu186Asp
T/C 26145515 intron_variant
A/C 26145555 intron_variant
C/T 26145667 intron_variant
C/T 26145673 intron_variant
T/G 26145694 intron_variant
A/G 26145719 intron_variant
A/T 26145798 intron_variant
C/G 26145886 intron_variant
A/G 26145963 splice_region_variant&intron_variant
A/G 26146038 synonymous_variant p.Ala137Ala
G/A 26146106 stop_gained p.Gln115*
G/A 26146107 synonymous_variant p.Thr114Thr
G/T 26146264 missense_variant p.Ser62Tyr
T/C 26146337 missense_variant p.Arg38Gly
G/T 26146361 missense_variant p.His30Asn
T/G 26146376 missense_variant p.Ser25Arg
T/A 26146379 missense_variant p.Ile24Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_27260.1
MDQMDDDSWQKWVSILEENDWHTISDFDLHSAGEEFKRDSSVVPAEESLKESSTTLLSNFPSLEKNTGFDMTSLTQQHDSPRPKSCVLSFENFTSVPIFDKKTCQHLGEHSNQTQEKTRKPLKRERNSSQTLDHIMAERKRRENLTKMFIALSALIPGLKKVDKVSVLNKAIEYVKCLEQRVKDLEKENKKRKIESKGCLKVSKSNMVGYDFSWTSHACNDGDKASKKCSKVEARVAGKDVLIRVTCEMQRNIVQNVMAKLEAHNLSVVSSNVLPFGNSAITITSIAQMNPKFTTTVDNFVKTLTEDLSKCCDLHY*


CDS Sequence:
>Vu_27260.1
ATGGACCAAATGGATGATGACTCATGGCAAAAATGGGTTTCGATTTTGGAGGAAAATGATTGGCATACTATAAGTGATTTTGACCTGCACTCTGCTGGAGAAGAATTTAAGAGGGACAGTTCAGTGGTGCCTGCAGAAGAGTCATTGAAAGAAAGCAGCACTACCCTTCTAAGCAATTTTCCATCTTTGGAAAAGAACACTGGCTTTGACATGACCAGTCTCACACAACAACATGATTCTCCACGACCAAAGTCTTGTGTTCTGTCGTTTGAGAATTTCACTTCAGTGCCAATTTTTGATAAGAAAACGTGCCAACATCTTGGTGAACACTCAAATCAGACCCAAGAAAAAACCAGAAAACCCCTCAAGAGGGAAAGAAACTCTTCTCAGACACTTGATCACATAATGGCTGAGAGAAAAAGGAGAGAGAATCTCACCAAAATGTTCATTGCCCTTTCTGCTCTTATTCCTGGCTTGAAAAAGGTGGACAAGGTTTCTGTTCTGAACAAGGCCATAGAATACGTGAAGTGTCTTGAGCAGCGTGTGAAAGATTTGGAGAAAGAGAATAAGAAAAGGAAGATAGAATCAAAAGGGTGCTTGAAAGTGAGCAAAAGCAACATGGTTGGATATGACTTTTCGTGGACCTCTCATGCTTGTAATGATGGTGACAAAGCTAGCAAGAAATGTTCGAAGGTTGAAGCAAGAGTTGCAGGAAAAGATGTACTTATCAGAGTAACGTGTGAGATGCAAAGGAACATTGTGCAGAACGTAATGGCCAAGCTTGAAGCTCATAATCTCTCTGTTGTTAGCAGCAATGTTTTGCCTTTTGGGAATTCTGCTATCACCATTACCAGCATTGCTCAGATGAACCCTAAATTCACCACGACAGTTGACAACTTTGTGAAAACGTTGACTGAGGATTTGTCCAAGTGCTGTGACCTGCATTATTAA


Promoter Sequence:
>Vu_27260::LG7:26146529-26148529(-)
TGCAGTATTGTCAGGAGAACAACCATGTTGTGCTGATAAAGGAAAGGCGAAGGCAAAGCCAAGGAGGCAACCTTACTACATTTTAGGGTTCCTTAATCACTATTAGCCCCAGATGCCCCAACTCTACCTAGCGTTGGGTCATCACATATGTAGCACGCTCTACTTTAGGGCCCACATCAGACCTTCCTATGGATCTCACACCATCTCCTTATCACACTCCTTTTATACCCACCTCATCGTCAATTCTATCTCTAGATATACACAACCCATTTGATGATCCTACTTTAGTTGCTGATGGAGTAGGCCCTTCTTCCCATGACCAATCATTGAACCTTATGGTTGAGGGTAATACCAAATCCTCTTTCTAACTAATTTCTATTACATGAATTGTTTACTTTTCCTTAATTATGATAACTTTTTTGTATTCATATTCAAATTTCTTCCTTTTAGAGTTGCTTCTCAAGTCATCATAAGGTCTATTAAGCAACAATTTTTCTTCCTTGACCATCATGGAGAGTAATACCTCCAGAAGAGAACTCTTCTAGCATCGATTTAAGGCAAAACATCATGTTACATAATCTCATTTTCTATTGAGTCTATCAAAAACATTTTAACATGATCCATTGTTACAGCTAAAAGTCTTTTGTGAAAACTTGAACATGAAGCTCAAATTAAGAAAAACTAATATTTTATGATGAAGAAAATTAATTAATTTCACTTAAAAAGAGACTTTCAATTGAACATACATCTTATCATAGCAACAAGCTTACGAAACAAGTAAAAAGGTTTCATATATTTTTTTATGTTCACTTTTTTTTAATTTATGACTTGTTCTATTAAATTTCAAAAATGTATTTTTATAACAATATATTTTTAAAATGAATTAAGAATACATATCTGAAATCTTGGTTATTATAATACATGAATTACCTAGAGTCTAGATTTATGCTATAAAAGTGGCTTAGAATTTTAAAATTCAATGTTATTATTTTTTTACAAGCTTTTTCTTTCATTACACAGTGAGATGTAAAAGTGGATGAATAATTTGTCCTTTGACAATTTGATTGCCTGAAATAGAGAAAAGCAAATAACAAATATAATTTACCTTTTGTTAAGGCTCATAACCAACTGAACGGTAAAGGTGTAGAGGAGTCTCTAAGTTATTGAGCTCGTAGCCGACCGATGATACCGCCTAGGCAAATGAACCGAGCGGACAAACAGTTAACCGTTCGGTAAAATGGGCTCGTAGCCGATCGAGCGGTAAAGGTGTAGAAGAGTCGGCCGACCGATGATACCTCTCATGCCAATGAACCGATCGGTAAAAACAGCCGTTAAGGTAATCAATAGTAATAACGATCGGGGAGTTAATGAAAATAATTGTCATTTATTGACAATTAATATTGTCATTCATTGGTGATTATAATGAGTCAGACCTAACGGTAAGCTCATTATAATTTATAAATATTCGTGAGGATAGGTAACTTGGACTGAACTTGAACTGAACTTTGAATTCTAACAACTAAATTTTGATTACAAGATTATTACGCAAAGTCACTGATTTGAGCGTCGGAGTGTCTTTTGTAGGCACCCTCTCCCGCAGCTTGGACAAGGAGAAGAGAGTAGACAGTACAACTGGACATCGGAACTGACAACTTTGAATGTTTTGGATTAAGGTTCTAAATCCTCCTGAAACAACTTTTTTAATACAAATTGCTCTGATCATTTAAACTTTGAAATCTTTTTCTGTTACTGCTATTATGTTGATTTACAGCATAATTACAAAATCAAATTGTAAAACACGTGTTGGAGAAAAGTGAGAGGGTCGTGGCTTTAGCCTCAGCCACATGTATAGTCTTTCTCAAATTACCAATACTCTAATCACACACTATCAATCAATAACCAATAATGGCACGGGAAGGAGTCCCACGTCGCTCAGTTTCGGCATCTCCCCTCAAGAGCATAAGCATATATAAACTGCACTACAGCCATTTTGTAGTTCG


Gene Sequence:
>Vu_27260(-)
ATGGACCAAATGGATGATGACTCATGGCAAAAATGGGTTTCGATTTTGGTAAGTAACATATGAAATATGGTATCTAACTTTATACACAACCTTGTTCCTAAAAATTGTTCTCTTTTGTTGTGTTTACAGGAGGAAAATGATTGGCATACTATAAGTGATTTTGACCTGCACTCTGCTGGAGAAGAATTTAAGAGGGACAGTTCAGTGGTGCCTGCAGAAGAGTCATTGAAAGAAAGCAGCACTACCCTTCTAAGCAATTTTCCATCTTTGGAAAAGAACACTGGCTTTGACATGACCAGTCTCACACAACAACATGATTCTCCACGACCAAAGTCTTGTGTTCTGTCGTTTGAGAATTTCACTTCAGTGCCAATTTTTGATAAGAAAACGTGCCAACATCTTGGTGAACACTCAAATCAGACCCAAGAAAAAACCAGAAAACCCCTCAAGAGGGAAAGAAACTCTTCTCAGACACTTGATCACATAATGGCTGAGAGAAAAAGGAGAGAGAATCTCACCAAAATGTTCATTGCCCTTTCTGCTCTTATTCCTGGCTTGAAAAAGGTTAGATCACATATGGTTTTTCCTTACACACTATTTCTTGTACTATTTTATTAACATCTGAAGATGGAATTTGGCATTAGAATTTTATCAGGATAGATTTTCTAGAATTATACTAAATTTTATTATAACAACTATGTATTTGTAATTGACTTTGTTATGTTTTATTTTTTTTTTTCTAGGGTTATTTATATACCTAATCCTACTTGTAATACATTTAATTAACTTTTTCTAATACTGTATATAAGATGTATTTTATTACTTATATTTGATTAGGAAGACTATTTTCTTGATCGGCTTCGCTCAAAGCCAACTCTAATAATTTGATGTTTAAGCCATCAAATACTACAAATCAGCTTTTTTTTTCATCGGTTTTGTGTATTTTTACATCTATTACTGAACAGATGTAGATTTTTCAATGGGTGCAAAGATGATTTTGCTTTGCATGAAGTCAAAAAATGGATGTAAGAAAGTTCTAATCTGTAAAGATGTGTGTAGGTGGACAAGGTTTCTGTTCTGAACAAGGCCATAGAATACGTGAAGTGTCTTGAGCAGCGTGTGAAAGATTTGGAGAAAGAGAATAAGAAAAGGAAGATAGAATCAAAAGGGTGCTTGAAAGTGAGCAAAAGCAACATGGTTGGATATGACTTTTCGTGGACCTCTCATGCTTGTAATGATGGTGACAAAGCTAGCAAGAAATGTTCGAAGGTTGAAGCAAGAGTTGCAGGAAAAGATGTACTTATCAGAGTAACGTGTGAGATGCAAAGGAACATTGTGCAGAACGTAATGGCCAAGCTTGAAGCTCATAATCTCTCTGTTGTTAGCAGCAATGTTTTGCCTTTTGGGAATTCTGCTATCACCATTACCAGCATTGCTCAGGTATATATATCTACACTCTTCTTATAATGACACATCTTATGAACATACCACTTTCCTTGTTTAAACATTAAATAAAGTATATATGTCAAAATCTAATAATTTAATCAAGTATTACTTTTAATTATTCTCTCACTTAGAAAAAACATCACTCGTTCCAGAGATAATAAGACAAACAATTTCAGTTGTCTGGTGTGAAAATCGATGATCAGTAGTTCTTTTGTTTTATCTTCTTTACATGCATGTGATTCTTTTTGGGATTGCTATTTTTTGAGATTGTTATATCATTCTCATTCTCATCAGTTTTCAAAATTCATCAAGCATGTATCAAAGTTCTCGTTTATTATCTTTTGAATGTCTTTCATCACTAATTTCATAATCATAATCCTCCAAATATTTACACAAAATACAATTTTGATGTTGCAAAACTGGAAGATCATTAATACAAAATACGACTAGAAAATGTAAGACATAATTACAATTTATATTTGTTTATAATATAAATGAAAAGTGCAATTAGATCATTATATTAATTATTTTATAGGATATTAATTTTCTAAGAATAATTGCAATTTCCAAGACTTACATGTACGATATAGAATAAAATAGTATGTCGTTTGTAAGAATAAGATCATAGTTACCCAGTTAGTATCTTTGTGAGCTTGCACGCTTATCACATGGAGCATTAAAATAATAATATATTGTTGTGCATGGACCATGATACGTATATGTATGATTGCCCTATCTTGCAGATGAACCCTAAATTCACCACGACAGTTGACAACTTTGTGAAAACGTTGACTGAGGATTTGTCCAAGTGCTGTGACCTGCATTATTAA