Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_27175 LG7 25133635 25136187 PREDICTED: homeobox-leucine zipper protein HAT3-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 25133908 stop_retained_variant p.Ter209Ter
C/G 25133988 downstream_gene_variant
A/T 25134056 downstream_gene_variant
A/C 25134179 downstream_gene_variant
C/T 25134217 downstream_gene_variant
G/A 25134517 downstream_gene_variant
C/T 25134779 downstream_gene_variant
G/T 25134838 downstream_gene_variant
A/T 25134881 downstream_gene_variant
A/G 25134949 downstream_gene_variant
C/T 25135690 synonymous_variant p.Ser61Ser
T/G 25135732 downstream_gene_variant
A/G 25135924 downstream_gene_variant
A/G 25135973 downstream_gene_variant
T/C 25136062 synonymous_variant p.Gln42Gln
G/T 25136104 missense_variant p.His28Gln
C/T 25136155 synonymous_variant p.Gly11Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_27175.1
MAEKDDGLGLGLSLRWGENDDNNMNEQHPFIMHKPPHPVPNQRASSFNSLFHFHGASHVTNRSSEPPPFFFGIDVNLPPPPSVAPCYEENGVSSPNSAVSSISGKRSEREENERGSCSLGGSEDDDGGGCGGDADTSRKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLNPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTEDNRRLQKEVQELRALKFSPQLYTHMNPPTTLTMCPSCERVAVSSASSSSAAMPSVPPPSNHNPLGPTIRRPVPVNPWAAMSIQHRPPP*


CDS Sequence:
>Vu_27175.1
ATGGCTGAAAAAGATGATGGTTTGGGATTGGGGTTGAGTTTGAGATGGGGAGAAAATGATGATAATAACATGAATGAACAACACCCTTTCATCATGCACAAACCTCCTCATCCTGTTCCAAACCAAAGGGCTTCTTCTTTCAATAGTTTGTTCCATTTCCATGGTGCGTCTCATGTGACCAATCGAAGCTCTGAGCCACCACCTTTCTTCTTTGGAATAGACGTGAACTTGCCACCACCACCATCGGTGGCACCATGCTACGAGGAGAACGGTGTGTCTTCGCCAAACAGTGCAGTTTCGAGCATCAGCGGGAAGAGGAGCGAAAGAGAGGAGAATGAGAGGGGGTCATGTTCTCTAGGCGGAAGTGAAGATGATGACGGCGGAGGATGCGGCGGTGATGCCGATACATCGAGGAAGAAGCTCAGGTTGTTGAAAGAACAGGCCTTGGTGCTTGAAGAAACATTCAAGGAACACAACACTCTGAATCCTAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAATCCTAGACAGGTTGAAGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTATGAGAATCTAACGGAGGACAATAGGAGGCTACAGAAGGAAGTACAAGAGCTAAGAGCATTGAAGTTTTCCCCACAGCTCTACACGCACATGAACCCTCCAACCACTCTTACAATGTGCCCTTCCTGTGAGCGTGTTGCTGTCTCATCTGCATCCTCCTCATCGGCCGCCATGCCTTCTGTGCCGCCTCCAAGCAATCACAACCCATTAGGCCCTACCATCCGGCGGCCGGTGCCTGTCAACCCTTGGGCGGCGATGTCAATTCAGCACCGTCCCCCACCATAA


Promoter Sequence:
>Vu_27175::LG7:25136187-25138187(-)
ACTACAACTCATTGTAGGTTCACTTATAATTTTAATCTTGTTTTAAAACTATTTACTTATAGTTATTCTTATTTTCATCTATGATTTTAGAAGTAATTCTGAATTTGCTTAAAATTAATATTTTGCATGATAGGAGTTCATTAGACTGCCACTTATGACACATTTCTGTCTTTGAGTGTCTCCCTTAGAAAATATGATGGATCTTAGAGAAGTTTTATAATAATTAATGTCACTTTTATGTTTTATATTTAGCAACAGTGGGACCCATTTAATGATGACACAAAAACATACATCTAGTTATCTATCATCATCTCTATGATGAGATCATGATTCCAAAGTGAAATCACATCTTTTTCTCCCTCTTCTACTCTACAAATTCATCAGTCAACCATGAAAAAAAGCATCTTTTCCTTTTCAACTCAACAGAAAACACAAGCAAAACCACATGACTATCATAAATAAATAAATAAATACATTGGTAAAATAATAATACAATTTAGGATTCTTAATATAAATAACTTATCAAAATAAATTTTGAAATTTTGTAATATTATTGTTGCACTGAACATGTATAATTTTGATGTTAGAATAAATTAAAATTATCACTTTACTGATTTTATAGAAAATATCATTTTTTAAAAAGAGTTAGAAGATTAATAATAAAACTACCTATATTTATCAAATTAAATGTTGCTTTAAATAAAAAATCACATCAATAATAACTAATATTACTTCTACCATTTTCTTATTTTAGTATTAGATTTCAATTCTACTCTTTTAAATAATATATATATATATATATATATATATATATATATATATATATTAATATGAATAAGTATATATTGACCATATACTATTTTTTATACACTATTATTAAATGAAAAGTATGTTTGTATAAAAAATTATATAGTTTTCTTGCAAATACTTTTTAAGTAAGGATACAAATTTTTGAAACTGCTATAATATTATTTTATACTACATTTTGTACTTTTATGTAAAAAAATATAGTTTTTAGAATATTTTATTTTATTTTTGTAGTAAGACTGTTATTTTATTAAACTAAAATAATTCTATTTTGTGATTCTCGATCCAAACAATAATTGATGTATCTCCTATATTCAAACAATAATTAATTAATTTTTCTTTTAAATATACTTATTTTAAAATATGTGCATGCGAGTACAACTTGTTTGTATTGATCATACATGTTTATTAAACTCTTTAAATATAAATATTAAAATTAAAATTAAGATAAATAGGTTAAAAATAATACATTTTATTAATACTAATCGATAAAACTAAATAACACAAGCCAAATGTTTTAAATTCATTATAAATTTTTTATCCTATTTAATTTTTGAATTAAAAAGAAAAGAAAATATCTTTAACTGGTTGCAGGTAGTAATGCATGCTTAAATAAAGGTGCATAAAATATCTTAAGGTGCATTGTAACTAAAACCATAAAATTTAAGGTTGGTCAACTTAAAAATATAAAAATCCTAAATCAGGTAAGTTACTTCTCTCCTCATTATCCTTCAATCCTGTGCAATAAATGAATTTCGGAACTCCAAAAACAAGACTTGAATGCATCATTCTCATCTTTTTCACAGCACAACACAACCATGGTTAAAAAGCAACCACATTTTAATGGTATATGTATTTAAGCTTTGAAATTCATCATAGGACAATGTTGCTTTGTAGTACCCAGTACAAGCCATGTCATATGATGATTGAACCAATTTGGCTCTCTGACACATCTCATCATTAACTCTATTGTGCCTATTTACTCTTTCTCAGCTTTCTCTTTCACACCCTCTTCAGTAGTATTTATCTCTCTCTATATATATCTATATATCTATAGATATATACACACACTTCTGTGTTCTGTTCTTTTCCTGTTCTTCAAAAAGCTTCCCTCACTGTCACTAAAGTCTACCCATTTGCTAATCTCTTCTACACAGTCCAAAATCAAAGAAAAGTCTTCACTTTGACCAACA


Gene Sequence:
>Vu_27175(-)
ATGGCTGAAAAAGATGATGGTTTGGGATTGGGGTTGAGTTTGAGATGGGGAGAAAATGATGATAATAACATGAATGAACAACACCCTTTCATCATGCACAAACCTCCTCATCCTGTTCCAAACCAAAGGGCTTCTTCTTTCAATAGTTTGTTCCATTTCCATGGTAAAGTTTCTAATCACAATCTCTTCATTTTTTTTCAATTCATTCCTTCATTCTGGCTTCTAGTTTCTTCCAAATGTTTATTTTTGAAAACAAAAAAACTTTCCTTTTTCTTCTTTCATACACATTTTTTTTGGCTGAAATAAGAAACCCATTTCTCATAATTTTCATGCTGTGAAGAACACTCATCTTTGATTTTTTTGTTGTTGATATTTTAGTAGAAAATCATGCAAACAGGAACAAGGTATTTTCTTTTTTCCATTTTTTATAACGTCTGAAAATTCTTTGTTAAACTACTCCTTTTATCGTTGCTAAGGTGCGTCTCATGTGACCAATCGAAGCTCTGAGCCACCACCTTTCTTCTTTGGAATAGACGTGAACTTGCCACCACCACCATCGGTGGCACCATGCTACGAGGAGAACGGTGTGTCTTCGCCAAACAGTGCAGTTTCGAGCATCAGCGGGAAGAGGAGCGAAAGAGAGGAGAATGAGAGGGGGTCATGTTCTCTAGGCGGAAGTGAAGATGATGACGGCGGAGGATGCGGCGGTGATGCCGATACATCGAGGAAGAAGCTCAGGTTGTTGAAAGAACAGGCCTTGGTGCTTGAAGAAACATTCAAGGAACACAACACTCTGAATCCTGTGAGTCAAACATAATAAAAGTGTTGTAATTTCTATTGCAATGATAATGCCTATTTTGGAATAATCAAACTCGTAACCACAAAACTTAGATACTGTTTCCAAGTGATTTCGGTGTTAGTTTGATTTAGAATTGAAGTTTATGCAATGTGCTACAAAAGAGGTTTTTGTCCAAATAGATTTCTGATTGAATATTTTCTGTTAGTCATTTTGGCTGAAAGTGTGGTAGAACTGAACACCTCGAAGCTGAAAATATGGTGGCGGTGACATAACACCAAAAGCATTACATTCCAGCCAAAATTGTGGTCTTAATCAGTCAAGATGAAACCATACATCTTTCATCCGAAATTGTGGTCATGGTGACACAAAACTGAGAATCTTTTGGCAGAAATTGTGCATAACCGAGAACCTTTTGGCAGAAATTGTGGTTATAGTGCGATCATTGTGGCTGAAATTGTGGTTGAATAACTTACTTAATCTCGTTTAAATTGACTCCAATGTCTAACTTTTGTGATAAATCATTCTGACTTTCTTCTTTTCACAAAGTAACCGTAAAATTATTGAGGAAAGTGATTGAAATTGTAAAAATCAGTTGCTAAATCAAACTTTGTTTATAATTTCAGGATAGGATGAGGTTTATTCTGAATTATTCATTTGTGTTGGAAGTATGATTCAATGCTGGCATTTAGTCTCAAAATTATTTTTGTTATTTATAGAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAATCCTAGACAGGTTGAAGTGTGGTTTCAAAACAGAAGAGCAAGGTGAGGATATTCATCCAAGGGACATTCTTGACACTTTTGTATATGATTACTTGAATGATGAATATTGTGTTGTGACATTGTTCATTGTCTTTCTTCAGACAAGTTTTTGTAATATGTATGCCCCACTGTGTTGTTATGTATTTAGAAGGATTTGTTGTTCCCCATCAATGCCATTCTTCTTTAACAGTAACTTCAAGACAACTCCAACTTTCATGATGAGATTTGACCAATTTGAATGTGATCAATAACACAACTTTTGTGAGACATCAAAGTATATAAAGTTCTGGATGGTTTAGATTTTAATTTTTTGAAATAAAACACGGCATGTGTAAATAACTTACATGTGTATGCTGGGGCCACAGCACTGACAAACATGTAATAATTTGGTGATGATGGATTTTGAAGTTAAATTTTGGAACCTTTGGTGTTTACTTGAGTTCATTCATTTTTTCATTAGTTAATGGAAATACACAAATTTCCAACTTTACAATGATAAACTAATAAAGTGATATAAACTAACGAAAATTGATGTGGCTTTGTTGTTGTGTGTCGTGTCACGTGTTACTTTGTCTTGCATTGTGTAATGAAAAAAAGAAAGTGATGTGAATGCTTTTGGTTCAATAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTATGAGAATCTAACGGAGGACAATAGGAGGCTACAGAAGGAAGTACAAGAGCTAAGAGCATTGAAGTTTTCCCCACAGCTCTACACGCACATGAACCCTCCAACCACTCTTACAATGTGCCCTTCCTGTGAGCGTGTTGCTGTCTCATCTGCATCCTCCTCATCGGCCGCCATGCCTTCTGTGCCGCCTCCAAGCAATCACAACCCATTAGGCCCTACCATCCGGCGGCCGGTGCCTGTCAACCCTTGGGCGGCGATGTCAATTCAGCACCGTCCCCCACCATAA