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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_27091 LG7 24368678 24369514 PREDICTED: ethylene-responsive transcription factor ERF003-like
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 24368922 intron_variant
C/T 24368967 intron_variant
G/T 24369360 missense_variant p.Gly161Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_27091.1
MFASHSERNFTSLFRYYNFTFSFSQSWPDPNNAIVESAKGTGALGKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPHSSSSKLLSATLTAKLHKCHMASLSLQMAKQKSPQNKEPQPSEGSNPFASANVIVGSSAETGFRWTENRHEELRWLEGNWVSMAGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELCSVCST*


CDS Sequence:
>Vu_27091.1
ATGTTTGCTTCCCATTCTGAAAGAAACTTCACGAGCTTGTTTAGGTATTACAATTTCACGTTCTCTTTTTCTCAATCATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGAAAACTAGAATTTGGCTTGGAACCTTTGAAACGGCTGAAGATGCAGCGAGAGCATATGATGAAGCAGCTAGACTCATGTGTGGACCAAAAGCACGCACCAATTTCCCATACAACCCCAATGAACCACACTCATCCTCATCCAAGCTTCTCTCTGCCACTTTAACGGCTAAGTTACACAAGTGTCACATGGCCTCACTTTCACTTCAAATGGCCAAGCAAAAATCACCACAAAACAAAGAGCCTCAACCCTCAGAAGGGTCCAATCCATTTGCCTCTGCCAATGTCATTGTTGGATCAAGCGCTGAAACTGGTTTTAGATGGACGGAGAATAGACACGAGGAGTTAAGGTGGCTCGAAGGGAATTGGGTTAGCATGGCAGGCCAAGTTGAAGTTTCCCATCAGCAATTTCAACCTGTTCTTGAAGATGATCACATAGAGCAGATGATTCAAGAGTTGCTTGATTATGGATCAATTGAGCTTTGTTCTGTTTGCTCAACCTAG


Promoter Sequence:
>Vu_27091::LG7:24366678-24368678(+)
AAACCCTACTCCCTAAACCCTTAACCGTCAACCTTGAACCTTTCACCTTAAAACCTAAACCCTGAACCTTAAACCTTAAACCCTACACCCTAAACCCTACACCCCTGAACGTTGAACCCTAAATGCTGAAGCCTAAATCCTATACCCTAAACCTTTGCCATAAAGCCTACACCCTAAACCTTACATTCCCGATTTAGATCAAATTTATGTGTATATATATACCTATCTCCAATATATAATGAGATACACAATAAAATCATCTTTCTTTCTTACAAAAATATTTAACACAATTGGTTAAACAAACTATATTCATTCATTTTTAAAGTTTCACGACCAAATTATATCAAAATTTAAACAAATTCAAATTTTACATTCTAATTTAGATAACATTTTTATGTATACATAATGGATATAAAATAAAATCATCTTTTCTTCTTAAAAAAAATTAACATAATTAATTAAATAAATTATATTCATTCATTTTTTAAGTTTATTATATCAAATTATATCAAAACTTTGAACAAATTCAAATTTTACATTTAGGAAAGTTAATATATGTTTATATATAAGCGATTACTTATTTTCATGTCTTTGTCGGTATTTTTTTTTCCTTTATTAACCTAATTTATTTTTTCAAAGTTTTCTTTAGTAACTAGAGTAAATGATAGTAGAAAAAAAATGAAAGTTATACTCATAAAGAAAATAATAAATTTTATTTTTATCCATCACAACCGCGATGGCTGACTTGTTTAGTTCTTAGTGTAATTAGTGTGTTTCATTCTCTCACTTTTAACTGACTACATGTGCGTTTCCTTGTTATACATCTTAGAGCTTTTTATTGGGTCTTTTAGTTAGAAGAATTTTGTGTTTTATGTAAAAGAGTTAGAACATTTAATAATTTTATTTTTTTGTTGATAAAAAAAGAGAAAATAAAATAATGTAATAAAGTTTTGCATTAAGGAATCTGTTATATATGCAATGGTTTCAACTAAGCTAGATAAAAGCATTTATTTACCATGTCAACGAACAGTAAGAGATGACTTTATCATACATTTGGCTCCTAAATTTTATCAATGCTTACAGTGTCTTTTCATTTTCTGTAGAGACCCATCAATATCTGAGAGGCGTATACATGCAGAATAATATCTTAGAAATTTTATTGTCTTGTAAGGCCAATTCTTTTATTATTTGTTTTTGGAAAATTCCGTTGACTATGCCTACAACATAAAATAAATAAATATTTTTCCATGAATTAACAAAATTATTGGTATTTATAGTTATATTAAAACAGACAGTGTAAATCCATCTAAAACTTTATATATATATATATATATATATATATATATATATATATATATATGTATATATATATATGTATATATATATATATATATATATATATATGTATGTATATATATATATATGTATGTATATATATATATGTATGTATATATATATGTATGTATATATATATATGTATATATATATATATATATATATGTATATATATGTATACGTGTATATATATATATACGTATATGTGTGTGTGTTTTCGTCACGTGAAATCATTATAAAGTTGGCTGGGCTGTCATGCACCGGAAAACATACTCTATACGGAAGCTCATTGTTAGAAAATAAAAAATATATATATTATTTCTTCTAAAACTGAAATATGATTAAGAAGAAACTTCACTGAAAGTTATTAACTATTAACAAATGGATATTGTTAAATTTACATTACAAAACCAAAATAAATAAAAATGATTTTTTTTTTCAAAAAGAATAGATATTATGATATTTTGTTTATAAAAAAATAATAGCAGTCCTTCTCCAAGAACTTTACCTGCATCAAAGGGGTGAAACATTATGTGTGGGTCATTTATACTGATAGAGGACAAAAAGACTAAAGAATTTTGTATAAATCTTGAAAAGCAGTGTATAAATATATCTAATAGAGCTCCTTCACCTTCACTTTACTTCACTGCAGTCACCTTCCTGTA


Gene Sequence:
>Vu_27091(+)
ATGTTTGCTTCCCATTCTGAAAGAAACTTCACGAGCTTGTTTAGGTATTACAATTTCACGTTCTCTTTTTCTCAATCATGGCCAGACCCCAACAACGCTATCGTGGAGTCCGCCAAAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTTATTGTAATTCACTCGTGATAACATCACACCATATCATAACTTCACTTTTATTCTTTATTAAAGATCTTTTCAACTCCTTTACGTGTGTTATAGCAATTTACTACTGCATTAAGTACTTAGTAATTGATATAACTCTTGCACACGGTTTATGTTAATTTTATTTTTTTTTGGACAACAGGAAAACTAGAATTTGGCTTGGAACCTTTGAAACGGCTGAAGATGCAGCGAGAGCATATGATGAAGCAGCTAGACTCATGTGTGGACCAAAAGCACGCACCAATTTCCCATACAACCCCAATGAACCACACTCATCCTCATCCAAGCTTCTCTCTGCCACTTTAACGGCTAAGTTACACAAGTGTCACATGGCCTCACTTTCACTTCAAATGGCCAAGCAAAAATCACCACAAAACAAAGAGCCTCAACCCTCAGAAGGGTCCAATCCATTTGCCTCTGCCAATGTCATTGTTGGATCAAGCGCTGAAACTGGTTTTAGATGGACGGAGAATAGACACGAGGAGTTAAGGTGGCTCGAAGGGAATTGGGTTAGCATGGCAGGCCAAGTTGAAGTTTCCCATCAGCAATTTCAACCTGTTCTTGAAGATGATCACATAGAGCAGATGATTCAAGAGTTGCTTGATTATGGATCAATTGAGCTTTGTTCTGTTTGCTCAACCTAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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