Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_26854	LG7	18836253	18837895	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/A	18836432	stop_gained	p.Cys60*
A/G	18836762	synonymous_variant	p.Leu170Leu
T/A,C	18836777	synonymous_variant	p.Leu175Leu
G/A	18836885	synonymous_variant	p.Pro211Pro
G/A	18836901	missense_variant	p.Val217Ile
A/C	18836921	synonymous_variant	p.Leu223Leu
G/T	18836925	missense_variant	p.Val225Leu
G/A	18836935	missense_variant	p.Cys228Tyr
G/A	18836937	missense_variant	p.Gly229Arg
G/A	18836938	missense_variant	p.Gly229Glu
A/G	18836958	missense_variant	p.Lys236Glu
A/T	18836989	missense_variant	p.Tyr246Phe
G/A	18837061	missense_variant	p.Arg270Lys
C/G	18837066	missense_variant	p.Leu272Val
A/T	18837117	missense_variant	p.Thr289Ser
C/T	18837130	missense_variant	p.Ser293Leu
A/T	18837178	missense_variant	p.Gln309Leu
G/A	18837179	synonymous_variant	p.Gln309Gln
G/A	18837186	missense_variant	p.Asp312Asn
G/A	18837210	missense_variant	p.Ala320Thr
G/C	18837253	missense_variant	p.Gly334Ala
A/T	18837380	missense_variant	p.Leu376Phe
C/A	18837385	missense_variant	p.Thr378Asn
T/A	18837399	missense_variant	p.Leu383Met
G/A	18837484	missense_variant	p.Ser411Asn

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_26854.1

MLRSRLYQLCVTTFLCIFLCHGSLHAEMCAEAEKQALLKLKEGFVHRLELLSSWNGDDCCIWKGVSCNNLTGHVTSLRLRFSNSTRVEDLNYLLDTMPEMEFFGAPTELGGKIDSSICELQHLTFLDLSHNYLQGDIPKCIGSLGQLTHLKLAWNGLNYIPYALSNLSNLQYLDLGKNNLVARDLDWLSHLSTLRYLDLSRNNLGAVTDWPSSISKVPFLSELYVNDCGLPQVKPKSISHINSSTYLQTLSLSENHFDSSIMSWVLNVSRVLRVLDLSHNELDNGIIKTFNTSCQLKKLYLGSNKLSEQLGDYLPEFCSAKDLEVLNLDHNPFGKGLLPDFSLFSSLERLSLQNTSTVGPLLFGHLPRLKALDLSLNTLNGSLPVFEVTKFASLHFLDLSHNKLSGRLPYSIGQLSNLWFLSISSNELNGDISHEHVSNLSRLKIFDVSKNSLSFNLNPDLVPPFQLVALYASSCILGHQFPLWLKHQKKLQVLQISNTSIMGSFPEWAYEYMGF*

CDS Sequence:
>Vu_26854.1

ATGCTTCGCAGCAGACTCTATCAGCTTTGTGTGACCACCTTTTTATGCATCTTTTTATGTCATGGAAGTTTGCATGCAGAGATGTGTGCGGAGGCAGAAAAGCAAGCTCTTCTCAAGTTAAAGGAAGGCTTTGTTCATAGATTGGAACTTCTATCTTCCTGGAACGGTGATGATTGTTGCATATGGAAAGGAGTTTCATGCAATAATTTAACAGGTCATGTAACCTCTCTTCGTCTCAGATTTTCAAATTCTACACGTGTTGAAGATTTAAACTACCTTTTAGACACAATGCCAGAGATGGAATTTTTCGGTGCCCCTACAGAATTGGGAGGTAAGATAGATTCTTCAATATGTGAGCTGCAGCATCTCACTTTCTTAGATCTCAGTCATAATTACTTACAGGGAGACATCCCAAAATGTATTGGTTCACTTGGTCAATTGACACATTTAAAACTTGCATGGAATGGTTTGAATTACATTCCTTATGCTCTGTCAAATCTTTCCAATTTACAATATCTTGACCTTGGGAAAAATAATCTTGTTGCAAGAGACCTTGATTGGCTTTCTCACCTTTCTACTTTGAGATACCTTGATCTCTCAAGAAACAATCTTGGTGCTGTTACTGATTGGCCGTCATCAATAAGTAAAGTCCCTTTTCTATCTGAACTATATGTAAATGATTGTGGACTCCCTCAAGTCAAACCTAAATCAATCTCCCACATCAATTCTTCCACTTACCTCCAAACCCTCAGTCTATCAGAAAATCATTTCGATTCTTCAATTATGTCATGGGTGTTGAATGTTAGCAGAGTCCTCAGAGTTCTTGATCTCTCACATAATGAACTTGATAATGGCATCATAAAGACCTTTAACACTTCGTGTCAACTTAAGAAGTTGTACCTCGGTTCCAATAAATTGTCTGAACAGCTCGGTGATTACTTACCAGAATTTTGTTCTGCAAAAGATTTAGAGGTGTTGAATCTTGACCATAACCCATTTGGTAAAGGGTTGCTTCCTGATTTTTCATTATTTTCATCCTTGGAAAGACTTTCACTTCAGAATACCAGTACTGTGGGGCCTTTATTATTTGGTCACTTGCCTCGTCTTAAAGCTTTGGATCTCAGTTTAAACACTTTGAACGGATCATTGCCTGTATTCGAAGTGACGAAATTTGCCTCATTGCATTTTCTGGATCTTTCTCACAACAAATTGAGTGGGAGACTTCCATATAGTATTGGACAACTTTCTAATCTCTGGTTTTTGTCCATTTCTTCAAATGAGTTGAATGGGGACATTAGTCACGAGCATGTATCAAACCTATCTAGATTGAAGATCTTTGATGTGAGTAAAAATTCTCTTTCGTTTAACTTGAATCCAGATTTGGTTCCACCTTTTCAATTGGTGGCATTATATGCATCATCGTGCATTTTGGGGCATCAATTTCCATTGTGGCTTAAACATCAAAAGAAACTTCAGGTGCTGCAAATCTCTAATACATCCATTATGGGTTCGTTTCCTGAATGGGCTTATGAGTACATGGGATTTTAG

Promoter Sequence:
>Vu_26854::LG7:18834253-18836253(+)

ATGTACATTTGAAAAAAAAAAGAAGAAATTCATATCACATTAATAAATCTCTTACATTATAGTGAATACACCAATATTTGTAAACTTTTGATTCAAAACTTTGTTGTGAACTTTTGTAATGTAAGATAGATCCCAGTTTGAACCCTTTTTCTTTTTTCTAGTAAAGCTAGTAAAATTTATAATGAAAATATAGCTCAAAATAAATTTAAAATGAGGAATAAAATTTTTACAACTATATATAATATAAAAGAAAAACATCAAAAACAGTTAGCAAAGGGCCTTAGCCTTGACTTCATAGTACTGATGCCAACTTTGTAACTGTAGTCATATCACTAAGCATGTGTCGATATCGCCAGTGAGAATGATGACGGAGCTATATTTTTGTAATCTCACATTGATTATATAGTAATCAAATTATAATGTTACAAAAGTGAATGCAAATCATATTTTACAAATTGGATGGTGATTAAATTAGATTTAAGATATACTCTTTAAGATAACAGTGAAGTCTATATGCTCATTTATTAAAAAAAAAATTATGAGTTTATGATTGAGGAAAACAATAATAATACACACACAAAAAATATTATAGTGAGTCATGCTAAATTTGTGAAATTGGGGCGAAGACTGCACATCTTCCTGCCACTAGTACCAAGGCTAGCTATAGCAGAAGTCATGTGAAATTGCTTACAATACTTTAGCCATTTTTCAAAGGAAAAATAACTGTTCACACACTTTTGTAGAGAAGTGATCATGACATGTTTTAAAGAGTGCTTAAAACATAATAAAGATAAAGATACTAATGATGGTTGGAAACTTTGTCTACTATAACTTGAAGTACTAAATAAATTTGTGCATTTATTTAAAAAAAAAAAACAATTGAATTGTTGAAAACATACCATTGGGTTCCTTTCTTAAATCTTCGCAATACTGAAGCCAATCATTGCAATAATGAACTCTCAGTTTATAAAACCAACACTATAGACTATAACAAAAATTCAGAATATTCTGATTATTTCTAAAATATGGACTATAACATAATAATATTCAAGGACTGTAAAAAAATTAAAATGAAAAATCATTACAGAACAAGAAGATAAAGCAAAAAAGCCATGCCAAAATTTACATATCAGAAATTATCATATTGTAAGATTCAAAATGTTTCATACAGGATCAGAAAAGGAAATATAAAATAGAAATTAGAGTATTTCACAAATTAAAATTTAAGAAAATGTAATAAGTTCAAAGAAACTTAGTATTTGAGCCACAAACGTATAGAATCCACAAATCAAATATGAAAAAGAAGGACAAAATAAAGCGACAAATTTAATTTCTTTAAAATATTTTTGTGCGGACGTTTCTTTTATTTGCTCTATCTATGTAAATGGTCCAAACTACCTTGATTAATTTTTTTTTAAAAAGAGATCCTGCATTTAAAAAAAAATTTCTGACTGGGTAGTGAATAAAAAAATGATTTGATATAGTTACAAAATTATCAAAATTAAAAAAAAAAATGGTAACCAAAAGAACTAACTTCAATTGAAGATGTGATCTTATATAACTGTTTTCATTGAAGTATTTTCTAATAGGTCATATTATTTCATGACATATGATTCCTCTGTTCATTTCAATGTTATTATAGAAAAAAATCAAAGTAAATGCAGTCTTTTTCTTATTACTTTTTAAAACGAGGACTAAACTTTTTACGACAATATACAATATAAAAAGAAAAGTGGTATGAAACATCCTCATGAATAATATCTGCAATGTGGAATATTTTTTTCACCTATCATTGTGTTGCAGAAAAGTCTTGACCCTCAGCTCAAGTTTGGATTTGTATTATAATTAAGTAGACTTGGAAAATACTAGGAATGAGCTTTTGCCATGGACTTGAAGTCTTCTAATTGTTATCTATAAATGTTTTAACTTCATATCTCCTTCTTACATTCTTCACATTTAATATCCCAAAACATTTTCAAAAAAGGTAGAGTTCATCACCA

Gene Sequence:

>Vu_26854(+)